BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00014032
         (5561 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  2214   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  2207   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  2132   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1987   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1962   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1841   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...  1786   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1775   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...  1774   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...  1756   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1749   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1746   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1739   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1736   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1662   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1648   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1639   0.0  
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...  1617   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1616   0.0  
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub...  1583   0.0  

>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 2214 bits (5738), Expect = 0.0
 Identities = 1136/1722 (65%), Positives = 1361/1722 (79%), Gaps = 17/1722 (0%)
 Frame = -1

Query: 5345 NMGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPC 5166
            N G +E VEAV F F+TDEEVRRHS+VK+T+PNLLD L+ P+P GLYDPAMGPLD  S C
Sbjct: 2    NQGASEAVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQC 61

Query: 5165 KSCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQL 4986
            K C Q   +C+GHCGHI+LVSP YNPLLFNML+N+L +TCF C  FR+SR EV+ CVS+L
Sbjct: 62   KFCCQS--NCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSEL 119

Query: 4985 ELIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYE-DK 4809
            ELI KG+ V AK       ++D    +      D E++ GSH S +    + ++H E +K
Sbjct: 120  ELIAKGDVVGAK-------MIDALSPD---NSTDREESEGSHMSCAMDDLNMQDHREYNK 169

Query: 4808 QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSI 4629
            +  WD+ Q  EAM+V++  LK K  KC NC+  NPKI KP+FG FH++ ++N +IR N I
Sbjct: 170  RPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMD-ISNKQIRENYI 228

Query: 4628 RSSRLDVTH-SGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRI 4452
             S R    H +GG E+ PS EVVNA++       G AE +  +T++D  +  SK   ++ 
Sbjct: 229  NSGRRFNLHDTGGSEENPSPEVVNATE-----PLGEAETSLCVTSTDGVEN-SKARKRQG 282

Query: 4451 KILNQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGYSM 4275
               +  +E Q + FS   LPSQVR I+  LWENE PLC++  DIQ Q    SGK  G SM
Sbjct: 283  GDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVAGPSM 342

Query: 4274 FFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLM 4095
            FFL++ILVPPIKFRPPAKGGDS+MEHPHT+LLGK++Q+NIALGNAH+N A RSKIISRLM
Sbjct: 343  FFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKIISRLM 402

Query: 4094 DLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPY 3915
            DLQQS+NVLFDSKTA+   QKD  SGICQ LEKKEGIFRQKMMGKRVNFACRSVISPDPY
Sbjct: 403  DLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPY 462

Query: 3914 LSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASK 3735
            LSVNEIGIPPYFALRLTYPER+TPWN  K+R AVINGPE HPGA ++ D ++TVKLP++K
Sbjct: 463  LSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNK 522

Query: 3734 KMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 3555
            KMRVAISRKLPSSRGA+TQSG N+E EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHV
Sbjct: 523  KMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHV 582

Query: 3554 VRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGD 3375
            VRVLKGEKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GD
Sbjct: 583  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGD 642

Query: 3374 TVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEG 3195
            TVRGLIQDHIV AV+LTMKNTFLT  EF+QLLYGSGVFA GP    GN S KVS+VD EG
Sbjct: 643  TVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEG 702

Query: 3194 LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDS----YKN 3027
            +V+++LP +WKP+PLWTGKQVITALLNH+T+G APCTV+N+GKIP  YF  +S    Y++
Sbjct: 703  VVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVEYQS 762

Query: 3026 GEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 2847
             EE ED+ AE+  L+WKNELVRGVIDKAQFGKFGLVHT+QELYGSN AGILLSALSRLFT
Sbjct: 763  REEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFT 822

Query: 2846 IFLQIHGFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQ 2667
            IFLQ+HGFTCGVDDL+ILPHYD +RK++LEG+DVGEE HC+FVKFK G+IGP ELQLEI+
Sbjct: 823  IFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIE 882

Query: 2666 KVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAK 2487
            K + S++E+ATA+LDMKMKNKL NK    GSQ  K LL  GLLKPFP+NCI++MT TGAK
Sbjct: 883  KAMSSNKEAATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAK 938

Query: 2486 GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQE 2307
            GSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLPCFPPWD  SRAGG+++DRFL+GLRPQE
Sbjct: 939  GSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQE 998

Query: 2306 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 2127
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG
Sbjct: 999  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 1058

Query: 2126 VDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKE 1947
            VDVH+TSFLKNFKAL++N+ETICQK ++ R+ NSYIEKLP+GLEE+ + F  E + K  E
Sbjct: 1059 VDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHF-WEKRTKKLE 1117

Query: 1946 KQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAA 1767
            K++G  +++                 K  ++E+  F+ELV+QKY SSLA SGEPVGV+A 
Sbjct: 1118 KKLGKLVKK-------------EEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAG 1164

Query: 1766 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHE 1587
            QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTPILTCPF  W+SK++
Sbjct: 1165 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKND 1224

Query: 1586 VVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLK 1416
              SL+++VKK+TVAD++ESM+V+   LSI+  QV++ YKL +K+K  +FV   D   TLK
Sbjct: 1225 AQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLK 1284

Query: 1415 SVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQEAXXXXXXXXX 1236
             VFLRELEDAIE+H+  LS+++GI+NF +SS S  S+E +E+ S  R +E          
Sbjct: 1285 FVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHEE--EMLDDEDE 1342

Query: 1235 XXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENGKD 1056
                 DL SD QKRKQQ TDEM                 ED +  ++D     + +NG +
Sbjct: 1343 DERTEDLSSDAQKRKQQTTDEMDYDDDENEDEAETTAEIEDEKSEQTD-----EIDNGDE 1397

Query: 1055 EEAEHSEDNDGAS---NADEVMSEAKSSGRKGRATSERIEMPKEDSKKIR----RGISME 897
            EE  +  + +  S   + ++ +S  KSS  K + T   ++  K+  ++ +    R + ++
Sbjct: 1398 EEIGNRGNEEQMSKLQSTEDDISNTKSSKSKTK-TKTTVKQNKKKERRSKKDSDRCVFVD 1456

Query: 896  VKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKK 717
            V+GL FEV FRF  EPH+LLAQ+AQKTAKKVYIK SGKI QC+MV+Y+  E TV+WD+ +
Sbjct: 1457 VEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQ 1516

Query: 716  KPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARAT 537
               +    +  D++YWA+KA+GVDF +FWEM DDLD++R+Y+NNI AMLNTYGVEAARA+
Sbjct: 1517 TKQQ---SQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARAS 1573

Query: 536  IIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASK 357
            I+REVK VF IYGV+IDFRHLSLIAD+MTHTGGY+PMSRHGSISESLSPFLKMSFETASK
Sbjct: 1574 ILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASK 1633

Query: 356  FIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            FIVEAA HGLTDNLETPSSRICLGLPVKMGTGCF++MQKLD+
Sbjct: 1634 FIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1675


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 2207 bits (5718), Expect = 0.0
 Identities = 1126/1717 (65%), Positives = 1352/1717 (78%), Gaps = 12/1717 (0%)
 Frame = -1

Query: 5345 NMGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPC 5166
            N G +E VEAV F F+TDEEVRRHS+VK+T+PNLLD L+ P+P GLYDPAMGPLD  S C
Sbjct: 2    NQGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQC 61

Query: 5165 KSCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQL 4986
            K C Q   +C+GHCGHI+LVSP YNPLLFNML+N+L +TCF C  FR+SR EV+ CVS+L
Sbjct: 62   KFCSQS--NCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSEL 119

Query: 4985 ELIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYE-DK 4809
            ELI KG+ V AK       ++D    +      D E++ GSH S +    +  +H E +K
Sbjct: 120  ELIAKGDVVGAK-------MIDALSPD---NSTDREESEGSHMSCTMDDLNVRDHCEYNK 169

Query: 4808 QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSI 4629
            +  WD+ Q  EAM+V++  LK K  KC NC+  NPKI KP+FG FH++ ++N +IR N I
Sbjct: 170  RPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMD-ISNKQIRENYI 228

Query: 4628 RSSRLDVTH-SGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRI 4452
             S R    H +GG E+ PS EVVNA++       G AE +  +T++D  +  SK   ++ 
Sbjct: 229  NSGRRFNLHDTGGSEENPSPEVVNATE-----PLGEAETSLCVTSTDGVEN-SKGRKRQG 282

Query: 4451 KILNQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGYSM 4275
               +  +E Q + FS   LPSQVR I+  LWENE PLC++  DIQ Q    SGK  G SM
Sbjct: 283  GDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAGPSM 342

Query: 4274 FFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLM 4095
            FFL++ILVPP+KFRPPAKGGDS+MEHPHT+LLGK++Q+NIALGNAH+N A RSKIISRLM
Sbjct: 343  FFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKIISRLM 402

Query: 4094 DLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPY 3915
            DLQQS+NVLFDSKTA+   QKD  SGICQ LEKKEGIFRQKMMGKRVNFACRSVISPDPY
Sbjct: 403  DLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPY 462

Query: 3914 LSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASK 3735
            LSVNEIGIPPYFA RLTYPER+TPWN  K+R AVINGPE HPGA ++ D ++TVKLP++K
Sbjct: 463  LSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNK 522

Query: 3734 KMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 3555
            KMRVAISRKLPSSRGA+TQSG N+E EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHV
Sbjct: 523  KMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHV 582

Query: 3554 VRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGD 3375
            VRVLKGEKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GD
Sbjct: 583  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGD 642

Query: 3374 TVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEG 3195
            TVRGLIQDHIV AV+LTMKNTFL+  EF+QLLYGSGVFA GP    GN S KVS+VD EG
Sbjct: 643  TVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEG 702

Query: 3194 LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDS----YKN 3027
            +V+++LP +WKP+PLWTGKQVITALLNH+T G  PCTV+N+GKIP  YF  +S    Y++
Sbjct: 703  VVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQS 762

Query: 3026 GEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 2847
             EE ED+ AE+  L+WKNELVRGVIDKAQFGKFGLVHT+QELYGSN AGILLSALSRLFT
Sbjct: 763  REEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFT 822

Query: 2846 IFLQIHGFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQ 2667
            IFLQ+HGFTCG+DDL+ILPHYD +RK++LEG+DVGEE HC+FVKFK G+IGP ELQLEI+
Sbjct: 823  IFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIE 882

Query: 2666 KVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAK 2487
            K I S++E ATA+LDMKMKNKL NK    GSQ  K LL  GLLKPFP+NCI++MT TGAK
Sbjct: 883  KAISSNKEVATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAK 938

Query: 2486 GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQE 2307
            GSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLPCFP WD  SRAGG+++DRFL+GLRPQE
Sbjct: 939  GSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQE 998

Query: 2306 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 2127
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG
Sbjct: 999  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 1058

Query: 2126 VDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKE 1947
            VDVH+TSFLKNFKAL++N+ETICQK ++  + NSYIEKLP+GL E+ + F  E + K  E
Sbjct: 1059 VDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHF-WESKTKKLE 1117

Query: 1946 KQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAA 1767
            K++G  +++                 K  ++E+  F+ELV QKY SSLA SGEPVGV+A 
Sbjct: 1118 KKLGMLVKK-------------EEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAG 1164

Query: 1766 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHE 1587
            QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTPI+TCPF  W+SK++
Sbjct: 1165 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKND 1224

Query: 1586 VVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLK 1416
              SL+++VKK+TVAD++ESM+V+   LSI+  QV++ YKL +K+K  +FV   D   TLK
Sbjct: 1225 AQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLK 1284

Query: 1415 SVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQEAXXXXXXXXX 1236
             VFLRELEDAIE+H+  LS+++GI+NF +SS S  S+E +E+ S  R +E          
Sbjct: 1285 FVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREEEMLDDDDDDE 1344

Query: 1235 XXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENGKD 1056
                 DL SD QKRKQQ TDEM                +E  ++     D +++ +  ++
Sbjct: 1345 DERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGDEEEN 1404

Query: 1055 EEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKK-IRRGISMEVKGLSF 879
             +  + E      + +E +S  K+S  K + T ++ +  +  SKK   R + ++V+GL F
Sbjct: 1405 GDRGNEEHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLHF 1464

Query: 878  EVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGD 699
            EV FRF  EPH+LLAQ+AQKTAKKVY+K SGKI QC+MV+Y+  E TV+WD+    N+  
Sbjct: 1465 EVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDE----NQTK 1520

Query: 698  AEKQD-DTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREV 522
             ++QD D++YWA+KA+GVDF +FWEM DDLD++R+Y+NNI AMLNTYGVEAARA+I+REV
Sbjct: 1521 QQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREV 1580

Query: 521  KQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEA 342
            K VF IYGV+IDFRHLSLIAD+MTHTGGY+PMSRHGSISESLSPFLKMSFETASKFIVEA
Sbjct: 1581 KTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEA 1640

Query: 341  ATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            A HGLTDNLETPSSRICLGLPVKMGTGCF++MQ+LD+
Sbjct: 1641 AAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELDI 1677


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 2132 bits (5525), Expect = 0.0
 Identities = 1124/1707 (65%), Positives = 1308/1707 (76%), Gaps = 14/1707 (0%)
 Frame = -1

Query: 5324 VEAVRFGFLTDEEVRRHSLVKITNPNLLDI-LEKPIPGGLYDPAMGPLDESSPCKSCGQR 5148
            VEAVRFGF++DEEVR+HS+V ITN  L+D   +KP PGGLYDPA+GPL +SS C SCGQR
Sbjct: 4    VEAVRFGFMSDEEVRKHSVVGITNLKLVDDDTDKPFPGGLYDPALGPLGDSSKCLSCGQR 63

Query: 5147 AYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLELIVKG 4968
            +YHC GH GHIDLV P YNPL F  L NILN  CF C  F+  R EV+ CVSQL LI KG
Sbjct: 64   SYHCPGHFGHIDLVFPVYNPLSFKFLRNILNTACFSCRHFKVGRLEVETCVSQLHLIRKG 123

Query: 4967 ETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQA-FWDS 4791
            +   A++L                 +  L DN+GSH++ S V S+ E+  +      WDS
Sbjct: 124  DIAGARRLR---------------SLGGLSDNQGSHSTGSVVLSESESGQDLNWCRSWDS 168

Query: 4790 SQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRSSRLD 4611
             QL EAM VLNEF ++K +KC+NCE  +PKI  P FGWF+            +I  S   
Sbjct: 169  IQLTEAMGVLNEFFRKKEKKCKNCESRSPKITNPIFGWFYA---------VYAIHRSSSK 219

Query: 4610 VTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKILNQGL 4431
             TH   G+DKPS E               +EA+S + ++DS     KK +   K LN GL
Sbjct: 220  GTHIREGKDKPSPE--------------NSEASSSIISADSPGNSGKKGSSSNK-LNLGL 264

Query: 4430 EDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSMFFLETIL 4254
              Q +     LLPS+VR+++ +LWENE  LCS+I DIQQQQ KLSG    YS+FF ETIL
Sbjct: 265  VGQRH-----LLPSEVREMVMQLWENEESLCSFICDIQQQQGKLSGNRMDYSIFFFETIL 319

Query: 4253 VPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDLQQSIN 4074
            V PIKFR P +GG+SVMEHPHT+LLGK+L+SNIAL      NA+ SK IS  M+LQQSIN
Sbjct: 320  VNPIKFRAPTRGGNSVMEHPHTVLLGKVLESNIAL-----RNAQPSKFISHWMELQQSIN 374

Query: 4073 VLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIG 3894
            VLFD K++TS+  K G SGICQ LEKKEG+FRQKMMGKRVNFACRSVISPDPYL+VNEIG
Sbjct: 375  VLFDGKSSTSK--KAGVSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIG 432

Query: 3893 IPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAIS 3714
            IPPYFALRLTYPERVTPWN  KLR AV+NGP+IHPGATTY+DSV+T+KLP +KK RVA+S
Sbjct: 433  IPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDSVATMKLPLNKKARVALS 492

Query: 3713 RKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 3534
            RKLPSSRGA  + G + +L+FEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 493  RKLPSSRGATAEVGES-QLDFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 551

Query: 3533 KTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQ 3354
            +TLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQ
Sbjct: 552  RTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQ 611

Query: 3353 DHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLLP 3174
            DHIV+AVLLT+K TFLT SEF+QLLYGSGVFA G  S   N S+KVS    +GL+  +LP
Sbjct: 612  DHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLINPILP 671

Query: 3173 TIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQNAEH 2994
             IWKPEPLWTGKQVI+ALLNHITRG APC V+NQ K+P  YFT D+    +EDEDQNAE+
Sbjct: 672  AIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFT-DNPAMEDEDEDQNAEN 730

Query: 2993 NLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTCG 2814
            N LVWKNELVRGVIDKAQFGKFGLVHTVQELYGS SAG LL+A SRLFT+FLQIHGFTCG
Sbjct: 731  NFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLTAFSRLFTMFLQIHGFTCG 790

Query: 2813 VDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQKVICSDRESAT 2634
            VDDL+ILP YD +RK+KLE EDVGEEVHC+F+ FKPGQIG EELQLEI+K IC DRESAT
Sbjct: 791  VDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGREELQLEIEKAICRDRESAT 850

Query: 2633 ASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISA 2454
            A LDMKMKNKLT KLT EGSQ+LKHLLT GLLKPFP+NCISVMTTTGAKGSTVNFQQISA
Sbjct: 851  ALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISVMTTTGAKGSTVNFQQISA 910

Query: 2453 YLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREG 2274
            YLGQQELEGKRVPRMVSGKTLP FPPWDF SRAGGFITDRFL+GLRPQEYYFHCMAGREG
Sbjct: 911  YLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFLSGLRPQEYYFHCMAGREG 970

Query: 2273 LVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKN 2094
            LVDTAVKTSRSGYLQRCL+KNLESLKV YDYTVRDADGSIIQF YGEDGVD H+TSFLKN
Sbjct: 971  LVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQFCYGEDGVDAHKTSFLKN 1030

Query: 2093 FKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLH 1914
            FKAL +N+ETI QKFQN+ QFN YI+KLPEGLEEEA  FIQ+ Q  S  KQ+        
Sbjct: 1031 FKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQKAQTLSSVKQV-------- 1082

Query: 1913 KKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMT 1734
                                + +KF+ +V+QK+LSSL  +GEPVGVIAAQS+GEPSTQMT
Sbjct: 1083 -------------------VDHHKFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQMT 1123

Query: 1733 LNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKV 1554
            LNTFHLAGRGEMNVTLGIPRLQEILMTAS+VI+TP+LTCPF Q +SK   +S++S +KK+
Sbjct: 1124 LNTFHLAGRGEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKKI 1183

Query: 1553 TVADLVESMDVQLSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLKSVFLRELEDAIENH 1374
            T+ADL+ESMDV +S HP+ V R YKL +++KDTEFV L D + TLK+ FL+ELEDA+ENH
Sbjct: 1184 TIADLIESMDVSISFHPK-VGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALENH 1242

Query: 1373 VIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQEA-XXXXXXXXXXXXXXDLGSDVQK 1197
            V+FL +V+ I +F S S  E  +E +ED +    QEA               DL SDVQK
Sbjct: 1243 VVFLKKVAVINDFASHSRFEALSEGEEDKASDGAQEAEEEGDDDGGDSDAGEDLDSDVQK 1302

Query: 1196 RKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENGKDEEAEHSEDNDGAS 1017
            R+QQA D+M                 ED +K  ++ D  +D     ++  +  +D D  S
Sbjct: 1303 RRQQARDDMDYEDASDSEQREE---EEDLDKANAEEDDDDDENEWNEKCDDDHDDYDQRS 1359

Query: 1016 NADEVMSEAKSSGRK---GRATSERIEMPKEDS--KKIRRGISMEVKGLSFEVDFRFTTE 852
            +   ++ +    GRK      TSE+I++    S  K+  R I ME++GLS EV F+FT+E
Sbjct: 1360 SEKNMVEKPILKGRKKSVAAITSEKIDLSTMPSTGKRENRAIYMEIEGLSLEVHFKFTSE 1419

Query: 851  PHLLLAQIAQKTAKKVYIKRS-GKISQCKMVQYDPDEKTVIWDD---KKKPNRGDAEKQD 684
            PH+LLAQ+ QKTAKKVY+K++ GK++QCK+VQYDPDEKTVIWDD   K+K  +   +  D
Sbjct: 1420 PHVLLAQVVQKTAKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDDKKKEKATKNGRKADD 1479

Query: 683  DTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDI 504
            D +YWAVKASG D +SFWEM D LDL+RLY NNI++ML TYGVEAA ATIIRE+K VFDI
Sbjct: 1480 DAAYWAVKASGSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAASATIIREMKNVFDI 1539

Query: 503  YGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLT 324
            YGVKID+RHLSLI D+M H GGYRPMSRHGSI +S+SPFLKMSFETASKFIVEAA +GL 
Sbjct: 1540 YGVKIDYRHLSLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFETASKFIVEAAIYGLR 1599

Query: 323  DNLETPSSRICLGLPVKMGT-GCFELM 246
            D+LE+PSSRICLGLPV++GT G F+LM
Sbjct: 1600 DDLESPSSRICLGLPVRVGTGGPFDLM 1626


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1987 bits (5148), Expect = 0.0
 Identities = 1049/1756 (59%), Positives = 1288/1756 (73%), Gaps = 50/1756 (2%)
 Frame = -1

Query: 5348 ANMGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSP 5169
            A  GTTE VEAV+F F TDEEVR++S  KIT+P +LD +++P+PGGLYDPA+G +DE++P
Sbjct: 53   ATSGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTP 112

Query: 5168 CKSCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQ 4989
            C+SCGQR+++C GHCGHIDLVS  YNPLLFN+L+N+L KTCF C  F++S   V   VSQ
Sbjct: 113  CQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQ 172

Query: 4988 LELIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTS-DSTVFSDGENHYED 4812
            LELI KG+ V AK L      +   +  +       ED+ GSH S  STV S   ++   
Sbjct: 173  LELISKGDVVGAKNL----DSISPSESSYP------EDSDGSHVSCSSTVNSSARDNCSV 222

Query: 4811 --KQAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRS 4638
              KQ  W S Q  EAMSV++ FLK K R C+NC+  +P++ KPTFGWFH+  L++ + R+
Sbjct: 223  HLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRA 282

Query: 4637 NSIRSSRLDVTHSGGGEDKPSSEVVNASD-YSWKDDSGTAEANSFLTASDS-----TKKP 4476
            N IR S+L+   S   E+K SSEV N +D + W D   T E +S +  +D      TK+ 
Sbjct: 283  NVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRL 342

Query: 4475 SKKDAKR-IKILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKL 4302
             +K A+  I+ + Q      ++FSGPLLPS+VRDI+ RLWENE  LCS+I DI Q++   
Sbjct: 343  ERKGAQAPIEFIKQ-----KSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGA 397

Query: 4301 SGKATGYSMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAE 4122
            SG   GYSMFFLETILVPPIKFRPP+KG  SVMEHP T+LLGK+LQ+NIALGNAH NN+E
Sbjct: 398  SGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSE 457

Query: 4121 RSKIISRLMDLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFAC 3942
            RSKIISR MDLQQSINVLFD KTA  Q Q+D  SGICQ LEKKEG+FRQKMMGKRVNFAC
Sbjct: 458  RSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFAC 517

Query: 3941 RSVISPDPYLSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSV 3762
            RSVISPDPYL+VNEIGIPPYFALRLTYPE+VTPWNV KLR A+INGPEIHPGAT YVD +
Sbjct: 518  RSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKL 577

Query: 3761 STVKLPASKKMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTL 3582
            STVKL  +KKMR++ISRKLPSSRG + Q G + + EFEGKIVYRHLQDGDIVLVNRQPTL
Sbjct: 578  STVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTL 637

Query: 3581 HKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANE 3402
            HKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN 
Sbjct: 638  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANN 697

Query: 3401 QYIVPTRGDTVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSR 3222
            QYIVP+RGD +RGLIQDHIVSAVLLT K+TFLTR +++QLLY SG+ + G GS  G   +
Sbjct: 698  QYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGK 756

Query: 3221 KVSLVDSEGLVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF-- 3048
            KVS++DSE  ++ LLP IWKPEPLW+GKQVITA+LNHITRGR P T E  GKIP+ YF  
Sbjct: 757  KVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGS 816

Query: 3047 ------------TGDSYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQE 2904
                         G   +  +  E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQE
Sbjct: 817  EIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQE 876

Query: 2903 LYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHC 2727
            LYGSN+AGILLS LSRLFT+FLQ+HGFTCGVDDL+I P+YD  RK +L+  E++GE VHC
Sbjct: 877  LYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHC 936

Query: 2726 EFVKFKPGQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTA 2547
            +F+    G+I P +LQ+E++K+I S+ E+A   LD  MKN+L N+LT   S++ K LL  
Sbjct: 937  KFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLK 992

Query: 2546 GLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDF 2367
            GL+KPFPKNC+S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD 
Sbjct: 993  GLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDC 1052

Query: 2366 TSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCY 2187
             +RAGGFI+DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCY
Sbjct: 1053 AARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCY 1112

Query: 2186 DYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLP 2007
            DYTVRD+DGSI+QF YG+DGVDVHQTSF+  F+AL  N E +C+KF    +FN YI+KLP
Sbjct: 1113 DYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLP 1172

Query: 2006 EGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELV 1827
            + L ++ ++FI+   ++ ++                              K+Q  F+ LV
Sbjct: 1173 KELRKKTKKFIEGFMEERQDFD--------------------------NMKKQKDFVNLV 1206

Query: 1826 KQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1647
            KQKY+SSLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+
Sbjct: 1207 KQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAA 1266

Query: 1646 DVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKL 1476
            + IKTPI+TCP    RSK +   L +++KKVTVAD+ ESM+V +   ++   Q    YKL
Sbjct: 1267 NDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKL 1326

Query: 1475 IIKVKDTEFVP------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISE 1314
             +K+ +    P      L D  +TL++VF+RELEDAI+NH++ LS++SGIKNF+  S S 
Sbjct: 1327 KMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSM 1386

Query: 1313 VSNEADEDDSGVRTQEA-XXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXX 1137
             S E DED SG                     DLG D QKRKQQA+DEM           
Sbjct: 1387 ASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEM----------- 1435

Query: 1136 XXXELSEDGEKGKSDGDHLE-DTENGKDEEAEHSEDNDGASNADE------------VMS 996
                     + G S+G+  E +   G  EE +  ED    SN +E            V S
Sbjct: 1436 ---------DYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPS 1486

Query: 995  EAKSS-GRKGRATSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQK 819
            ++KSS  +K +  ++R +  +   K   R I ++ KG  FEV FRFT EPH+LLAQIAQK
Sbjct: 1487 KSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQK 1546

Query: 818  TAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFK 639
             A KVYI+ SGKI  C+++  + D+      D KK  R +   ++     A++ +GVDF 
Sbjct: 1547 AANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKK--RENIPGEEKKKLPALQTAGVDFT 1604

Query: 638  SFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIAD 459
            +FW+M D+LD+  +YSNN++AMLNT+GVEAARATII+EV  VF+ YGVK++ RHLSLIAD
Sbjct: 1605 AFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIAD 1664

Query: 458  YMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLP 279
            +MTH+GGYRPM+RHG I+ES+SPF KM+FETASKFIVEAA+HG+TDNLE+ S+RICLGLP
Sbjct: 1665 FMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLP 1724

Query: 278  VKMGTGCFELMQKLDV 231
            VKMGTGCF+LMQK+++
Sbjct: 1725 VKMGTGCFDLMQKIEI 1740


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1962 bits (5083), Expect = 0.0
 Identities = 1036/1747 (59%), Positives = 1272/1747 (72%), Gaps = 44/1747 (2%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            GTTE VEAV+F F TDEEVR++S  KIT+P +LD +++P+PGGLYDPA+G +DE++PC+S
Sbjct: 7    GTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQS 66

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQR+++C GHCGHIDLVS  YNPLLFN+L+N+L KTCF C  F++S   V   VSQLEL
Sbjct: 67   CGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLEL 126

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTS-DSTVFSDGENHYED--K 4809
            I KG+ V AK L      +   +  +       ED+ GSH S  STV S   ++     K
Sbjct: 127  ISKGDVVGAKNL----DSISPSESSYP------EDSDGSHVSCSSTVNSSARDNCSVHLK 176

Query: 4808 QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSI 4629
            Q  W S Q  EAMSV++ FLK K R C+NC+  +P++ KPTFGWFH+  L++ + R+N I
Sbjct: 177  QQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVI 236

Query: 4628 RSSRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKR-I 4452
            R S+L+   +G   D+  S +                          TK+  +K A+  I
Sbjct: 237  RGSKLERPLNGVDTDETHSSIAPTDGIQ----------------DTVTKRLERKGAQAPI 280

Query: 4451 KILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSM 4275
            + + Q      ++FSGPLLPS+VRDI+ RLWENE  LCS+I DI Q++   SG   GYSM
Sbjct: 281  EFIKQ-----KSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSM 335

Query: 4274 FFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLM 4095
            FFLETILVPPIKFRPP+KG  SVMEHP T+LLGK+LQ+NIALGNAH NN+ERSKIISR M
Sbjct: 336  FFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 395

Query: 4094 DLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPY 3915
            DLQQSINVLFD KTA  Q Q+D  SGICQ LEKKEG+FRQKMMGKRVNFACRSVISPDPY
Sbjct: 396  DLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPY 455

Query: 3914 LSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASK 3735
            L+VNEIGIPPYFALRLTYPE+VTPWNV KLR A+INGPEIHPGAT YVD +STVKL  +K
Sbjct: 456  LAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNK 515

Query: 3734 KMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 3555
            KMR++ISRKLPSSRG + Q G + + EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV
Sbjct: 516  KMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 575

Query: 3554 VRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGD 3375
            VRVLKGEKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP+RGD
Sbjct: 576  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGD 635

Query: 3374 TVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEG 3195
             +RGLIQDHIVSAVLLT K+TFLTR +++QLLY SG+ + G GS  G   +KVS++DSE 
Sbjct: 636  PIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSED 694

Query: 3194 LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------- 3048
             ++ LLP IWKPEPLW+GKQVITA+LNHITRGR P T E  GKIP+ YF           
Sbjct: 695  EMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGK 754

Query: 3047 ---TGDSYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGI 2877
                G   +  +  E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQELYGSN+AGI
Sbjct: 755  GKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGI 814

Query: 2876 LLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ 2700
            LLS LSRLFT+FLQ+HGFTCGVDDL+I P+YD  RK +L+  E++GE VHC+F+    G+
Sbjct: 815  LLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGK 874

Query: 2699 IGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKN 2520
            I P +LQ+E++K+I S+ E+A   LD  MKN+L N+LT   S++ K LL  GL+KPFPKN
Sbjct: 875  IDPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKN 930

Query: 2519 CISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFIT 2340
            C+S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD  +RAGGFI+
Sbjct: 931  CLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFIS 990

Query: 2339 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADG 2160
            DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DG
Sbjct: 991  DRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDG 1050

Query: 2159 SIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARR 1980
            SI+QF YG+DGVDVHQTSF+  F+AL  N E +C+KF    +FN YI+KLP+ L ++ ++
Sbjct: 1051 SIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKK 1110

Query: 1979 FIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLA 1800
            FI+   ++ ++                              K+Q  F+ LVKQKY+SSLA
Sbjct: 1111 FIEGFMEERQDFD--------------------------NMKKQKDFVNLVKQKYISSLA 1144

Query: 1799 QSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILT 1620
            Q GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+T
Sbjct: 1145 QPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMT 1204

Query: 1619 CPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEF 1449
            CP    RSK +   L +++KKVTVAD+ ESM+V +   ++   Q    YKL +K+ +   
Sbjct: 1205 CPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPAL 1264

Query: 1448 VP------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDD 1287
             P      L D  +TL++VF+RELEDAI+NH++ LS++SGIKNF+  S S  S E DED 
Sbjct: 1265 YPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDA 1324

Query: 1286 SGVRTQEA-XXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDG 1110
            SG                     DLG D QKRKQQA+DEM                    
Sbjct: 1325 SGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEM-------------------- 1364

Query: 1109 EKGKSDGDHLE-DTENGKDEEAEHSEDNDGASNADE------------VMSEAKSS-GRK 972
            + G S+G+  E +   G  EE +  ED    SN +E            V S++KSS  +K
Sbjct: 1365 DYGDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKK 1424

Query: 971  GRATSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKR 792
             +  ++R +  +   K   R I ++ KG  FEV FRFT EPH+LLAQIAQK A KVYI+ 
Sbjct: 1425 AKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRS 1484

Query: 791  SGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDL 612
            SGKI  C+++  + D+      D KK  R +   ++     A++ +GVDF +FW+M D+L
Sbjct: 1485 SGKIDLCQVIDCNKDQVIYYGRDPKK--RENIPGEEKKKLPALQTAGVDFTAFWKMQDEL 1542

Query: 611  DLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYR 432
            D+  +YSNN++AMLNT+GVEAARATII+EV  VF+ YGVK++ RHLSLIAD+MTH+GGYR
Sbjct: 1543 DVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYR 1602

Query: 431  PMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFE 252
            PM+RHG I+ES+SPF KM+FETASKFIVEAA+HG+TDNLE+ S+RICLGLPVKMGTGCF+
Sbjct: 1603 PMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFD 1662

Query: 251  LMQKLDV 231
            LMQK+++
Sbjct: 1663 LMQKIEI 1669


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1841 bits (4768), Expect = 0.0
 Identities = 1002/1744 (57%), Positives = 1223/1744 (70%), Gaps = 41/1744 (2%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G TE ++++ F FLTDEEVR+HS VKITNP LLD++E+P+PGGLYDPA+GPL E + CK+
Sbjct: 10   GATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKT 69

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQR+ +C GHCGHIDLVSP YNPLLFN L+ +L +TCF C  FR  R +V+ C+ QLEL
Sbjct: 70   CGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLEL 129

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFS-----DGENHYE 4815
            IVKG+ V AK+L   +S+          E +  E++  SH S  T+ S     DGE+   
Sbjct: 130  IVKGDIVGAKRL---ESVSPS-------EALYPEESDLSHESCPTIHSGVQCNDGEH--- 176

Query: 4814 DKQAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSN 4635
             +Q  W S Q  EAMSVLN FLK K +KC+NCE  NP I KPTFGWFH + +++  IR+N
Sbjct: 177  TRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRAN 236

Query: 4634 SIRSSRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKR 4455
             I   +L      GG     SE+   +D     + G   +         TKK  KK+ K 
Sbjct: 237  VITGHQL------GG--LLGSEIEGTTDVEDAAEPGDQHSG--------TKKHKKKERKE 280

Query: 4454 IKILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYS 4278
            +    +    Q + FS  LLPS+V++ L  LW+NE  +CS+I D+QQQ+     +  G +
Sbjct: 281  VLEFTR----QKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQE--FGKRKAGPA 334

Query: 4277 MFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRL 4098
            MFFLETILVPPIKFRPP KGGDSVMEHP T+LL K+LQSNI+LG+AH+N  E SKI+ R 
Sbjct: 335  MFFLETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINK-EHSKIVRRW 393

Query: 4097 MDLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDP 3918
            +DLQQSIN LFDSKTA    Q++G  GICQ LEKKEG+FRQKMMGKRVN+ACRSVISPDP
Sbjct: 394  LDLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDP 453

Query: 3917 YLSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPAS 3738
            Y+ VNEIGIPP FA++LTYPERVTPWN+ KLR AVING E HPGAT YVD +S  KLP +
Sbjct: 454  YIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPA 513

Query: 3737 KKMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAH 3558
            +K R++ISRKLPSSRGA+TQ+G   E EFEGKIVYRHLQDGD+VLVNRQPTLHKPSIMAH
Sbjct: 514  RKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAH 573

Query: 3557 VVRVLKGEKTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTR 3381
            VVRVLKGEKTLRMHYANCS +YNADFDGDE+NVHFPQDE+SRAEAYNIVNAN Q++ P+ 
Sbjct: 574  VVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSN 633

Query: 3380 GDTVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDS 3201
            G+ +RGLIQDHIVSAVLLT K+TFL++ EF+QLLY SGV   GP S  G   +KV    S
Sbjct: 634  GEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRS 693

Query: 3200 EGLVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKN-- 3027
            E  +++L P IWKP+PLWTGKQVITA+LNHIT    P TVE   KIP N+F   + ++  
Sbjct: 694  EDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKP 753

Query: 3026 -GEEDEDQNA-------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILL 2871
              EE  D++A       E  +LV+KNELVRGVIDK QFG++GLVHTV EL GS++AGILL
Sbjct: 754  CQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILL 813

Query: 2870 SALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPG--Q 2700
            S LSRLFT +LQ+HGFTCGVDDL+IL + D +RK +LE  E  GE VH  F+  K    +
Sbjct: 814  SVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIK 873

Query: 2699 IGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKN 2520
            I P  +QL I+K I SD +SA A LD +M N+L    T+  S ++ +LL+ GLLKP  KN
Sbjct: 874  IDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELN---TKTSSGVISNLLSDGLLKPSGKN 930

Query: 2519 CISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFIT 2340
            CIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +R+GG+IT
Sbjct: 931  CISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYIT 990

Query: 2339 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADG 2160
            DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADG
Sbjct: 991  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADG 1050

Query: 2159 SIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEAR 1983
            S++QFYYGEDGVDVHQTSF+  FK L  N++ I ++   Q   FNSYI +LPE L+E+A 
Sbjct: 1051 SVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKAD 1110

Query: 1982 RFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSL 1803
            RF+ +                      GR   +L  +E            L+KQK+L SL
Sbjct: 1111 RFLDDF------------------SIMGRIASNLVKRE--------DLYNLMKQKFLLSL 1144

Query: 1802 AQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPIL 1623
            AQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  IKTPI+
Sbjct: 1145 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIM 1204

Query: 1622 TCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE 1452
            TCP  + R+  +   L  +++KVTVAD+VESM+V +   +I    V R YKL +K+    
Sbjct: 1205 TCPLQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPA 1264

Query: 1451 FVP------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADED 1290
              P      + D  +TL+ VFLRELEDAI+NH+  LSR+SGIK+F+  S S  S EADED
Sbjct: 1265 HYPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADED 1324

Query: 1289 DSG-VRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSED 1113
             +G +  +E               DLG D QKRK QATDEM                + +
Sbjct: 1325 VAGDMSHREERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASE 1384

Query: 1112 GEKG----KSDGDHLEDTENGKDEEAEHSED----NDGASNADEVMSEAKSSGRKGRATS 957
             E G       GD+  +  N    + E SE           + +  +E+ S G K +   
Sbjct: 1385 EESGFESEIDQGDNETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKK 1444

Query: 956  ERIEMPKED--SKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGK 783
            ++ +  ++   SK   R I +E + + FEV F+FT EPH+LLA+IAQKTAKKVYI+  GK
Sbjct: 1445 KKPKAKRKSRISKDFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGK 1504

Query: 782  ISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLS 603
            I QC++   D  E  VI+  K    R D +        A+ A+GVDF +FW+M D LD+ 
Sbjct: 1505 IEQCRVT--DCKESQVIYYGKDPKERVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVR 1562

Query: 602  RLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMS 423
             +YSNNI+AML TYGVEAAR TIIRE+  VF  YG+ +  RHLSLIAD+MTHTGGYRPMS
Sbjct: 1563 YIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMS 1622

Query: 422  RHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQ 243
            R G I+ES+SPF KMSFETASKFIVEAA HG  DNLETPS+RICLGLPVKMGTG F+LMQ
Sbjct: 1623 RMGGIAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQ 1682

Query: 242  KLDV 231
            KL++
Sbjct: 1683 KLEI 1686


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1786 bits (4627), Expect = 0.0
 Identities = 976/1756 (55%), Positives = 1212/1756 (69%), Gaps = 53/1756 (3%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G T+ VEAVRF F+T EEVR+HS +K+TN NLLD++++P+PGGLYD  +GPL++ +PCKS
Sbjct: 7    GATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKS 66

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CG    HC GHCGHIDLVSP YNPLLFN L+ +L + CF C  FR+ + EV+ CVSQL+L
Sbjct: 67   CGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKL 126

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQAF 4800
            I  G+ V AK+L    +                + N GS  S S V     N    K   
Sbjct: 127  IGNGDIVGAKRLDSDSADASSYS----------DYNEGSQESGSIV----HNSEAVKPKE 172

Query: 4799 WDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRSS 4620
            W S QL EAMSVLN FLK K  KC+NC+  NP I KP FGW H+N +   ++R N IR  
Sbjct: 173  WTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGC 232

Query: 4619 RLDVTHSGGGEDKPSSEVVNASDYSWKDDS------GTAEANSFLTASDSTKKPSKKDAK 4458
            ++  T S    D+  S + +A D S   +        T+E     +  +  K   KK   
Sbjct: 233  KMVDTFS----DEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQV 288

Query: 4457 RIKILNQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGY 4281
             ++ + Q      N FSGPLLPS+V+ I + LWENE  LCS I DIQQQ     GK  GY
Sbjct: 289  PLEFMKQ-----KNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGY 340

Query: 4280 SMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISR 4101
            SMFFLETILVPPIKFR P KGGDSVMEHP T+LL K+LQ+NI+LGNA+ NN + SK + R
Sbjct: 341  SMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVR 400

Query: 4100 L-MDLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISP 3924
            L MDLQQS+N+LFDSKTA SQ  +D +SGICQ LEKKEG+FRQKMMGKRVNFACRSVISP
Sbjct: 401  LWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISP 459

Query: 3923 DPYLSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLP 3744
            DPYL+VNEIGIPPYFALRLTYPERVTPWNV KLR A+ING E HPGAT YVD +ST +LP
Sbjct: 460  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLP 519

Query: 3743 ASKKMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIM 3564
             S+K R++ISRKLPSSRGA+ Q G N + EFEGKIV RHLQDGD+VLVNRQPTLHKPSIM
Sbjct: 520  PSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIM 579

Query: 3563 AHVVRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPT 3384
            AHVVRVLKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+
Sbjct: 580  AHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPS 639

Query: 3383 RGDTVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVD 3204
             G+ +R LIQDHIVSAVLLT ++TFL+R EF+QLLY SGV +    S  G   +KV +  
Sbjct: 640  NGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVST 699

Query: 3203 SEGLVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNG 3024
            SE  +  ++P I KP+PLWTGKQVI+++L+HITRGR P TV    KIP+++F     KN 
Sbjct: 700  SEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNK 759

Query: 3023 EEDEDQNA--------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQE 2904
            +   ++N                     E  +L+++N+LVRGVIDKAQF  +GLVHTVQE
Sbjct: 760  QSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQE 819

Query: 2903 LYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHC 2727
            LYGSN+AGILLS  SRLFT+FLQ+HGFTCGVDDL+I+   D +RK +LE  E    E H 
Sbjct: 820  LYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHY 879

Query: 2726 EFVKFKPGQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTA 2547
            E    K       ELQLEI++ I  D E+A  +LD KM + L N+ + +G  +L  LL+ 
Sbjct: 880  ELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSE 934

Query: 2546 GLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDF 2367
            GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+
Sbjct: 935  GLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDW 994

Query: 2366 TSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCY 2187
             +RAGGFI+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ Y
Sbjct: 995  AARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1054

Query: 2186 DYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-L 2010
            D+TVRDADGSI+QF YGEDG+DVHQTSF+  F+AL  N++ + +K  +Q       +K L
Sbjct: 1055 DHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKIL 1114

Query: 2009 PEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIEL 1830
            P+GL  +A +FI+E   K + ++I                            +   F+ L
Sbjct: 1115 PDGLRSKAEQFIREEIKKYQHQKI----------------------------KPKDFLNL 1146

Query: 1829 VKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1650
            +K K+LSSLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1147 LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1206

Query: 1649 SDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYK 1479
            S  I+TP++TCP  + ++K + + L +++KK+TVAD++ESM+V +   ++    +   YK
Sbjct: 1207 SIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYK 1266

Query: 1478 LII------KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSIS 1317
            L +      K  +   + + D    LK VFLRELEDAI+NH++ LS++SGIK FM  S  
Sbjct: 1267 LKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQR 1326

Query: 1316 EVSNEADEDDSGVRTQEA----XXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXX 1149
              SNE DED S  R++E                   DLG D QK+KQQ TDEM       
Sbjct: 1327 NASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSE 1386

Query: 1148 XXXXXXXELSE-DGEKGKSDGD------HLEDTENGKDEEAEHSEDNDGASNADEVMSEA 990
                    L+  + E   S+ +      ++  ++NGKDE ++ S + +  SN     S  
Sbjct: 1387 VEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNP---KSRE 1443

Query: 989  KSSGRKGRATSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAK 810
            + +G + +    + +  +++S    R I   ++GL FEV F+   EPH+LLAQIA+KTAK
Sbjct: 1444 EKTGSEPKRKKMKAKFVRKESD---RAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAK 1500

Query: 809  KVYIKRSGKISQCKMVQYDPDEKTVIW---DDKKKPNRGDAEKQDDTSYWAVKASGVDFK 639
            KVYI+  GKI QC++   D  E  V +   D KK+ +  D EK       A+  +GVDF 
Sbjct: 1501 KVYIQSFGKIDQCRVT--DCSENQVFYYGEDPKKRKSPSDKEK-----IQALHTTGVDFG 1553

Query: 638  SFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIAD 459
            +FW+M D +D+  LYSN+I+AMLNTYGVEAAR TIIRE+  VF  YG+ ++ RHL+LIAD
Sbjct: 1554 AFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIAD 1613

Query: 458  YMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLP 279
            +MTH+G YRPMSR G I+ES+SPF KMSFETASKFIVEAA HGL DNLETPSSRICLGLP
Sbjct: 1614 FMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLP 1673

Query: 278  VKMGTGCFELMQKLDV 231
            VKMGTG F+LMQK+++
Sbjct: 1674 VKMGTGSFDLMQKVEI 1689


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1775 bits (4597), Expect = 0.0
 Identities = 968/1740 (55%), Positives = 1201/1740 (69%), Gaps = 37/1740 (2%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G T  VEAV F FLTD+E+RR S VKIT+P L+D L  P+P GLYD A+GP D+ S CKS
Sbjct: 7    GATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSLCKS 66

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQ + HC GH GHI+LVSP YNPL+FN+L+NIL +TCF C  FR+  +EVD   SQLEL
Sbjct: 67   CGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLEL 126

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQAF 4800
            I+KG+ + AK+L   +S++  K ++       +    G  +   +    GEN        
Sbjct: 127  IMKGDIIRAKRL---ESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLGEN-------- 175

Query: 4799 WDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRSS 4620
            W S Q +EAMSVL + L +K +KC+ C   NPKI+KPTFGWFH+N L+  E R+++IRS 
Sbjct: 176  WTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSV 235

Query: 4619 RLDVTHS----GGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRI 4452
              + T+     GGG+     ++ +A         GTA                K+D ++ 
Sbjct: 236  ESETTNDDISLGGGDTTDVEDITSA---------GTA----------------KRDKRKK 270

Query: 4451 KILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSM 4275
            + L+  L +QN   SG LLPSQV+ IL  LWENE  LCSYI DIQ Q     GK  G+SM
Sbjct: 271  EKLSYKLAEQNK-LSGSLLPSQVKGILELLWENEARLCSYINDIQDQGF---GKKAGHSM 326

Query: 4274 FFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLM 4095
            FFLE I VPPIKFRPP KGGD+VMEHP T+LL K+LQ NI+LG+AH+N ++ SK++SR M
Sbjct: 327  FFLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWM 386

Query: 4094 DLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPY 3915
            DLQQS+N+LFD+KTA+ +  +D  +GICQ LEKKEGIFRQKMMGKRVNFACRSVISPDPY
Sbjct: 387  DLQQSVNMLFDNKTASGK--RDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPY 444

Query: 3914 LSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASK 3735
            L+VNEIGIPPYFALRL+YPERVTPWNV KLR A++NGPE HPGAT Y D VS VKLP   
Sbjct: 445  LAVNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKG 504

Query: 3734 KMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 3555
            K+    SRKLP+SRG +   G   + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAH+
Sbjct: 505  KLLSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHI 564

Query: 3554 VRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGD 3375
            VRVLKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD
Sbjct: 565  VRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGD 624

Query: 3374 TVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEG 3195
             +R LIQDHIVSA LLT K+TFL+  EF+QLLY SGV   G GS  G   +KV + +SE 
Sbjct: 625  PIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSES 684

Query: 3194 LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF-----TGDSY- 3033
             +    P IWKPEPLWTGKQVI+ALL +ITRG  P T E   KIP N+F      G  Y 
Sbjct: 685  EMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYT 744

Query: 3032 KNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRL 2853
            ++  + +D+  E  LL++KN+LVRGV+DKAQFG +G++HTVQELYGSN AG LLSALSRL
Sbjct: 745  EDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRL 804

Query: 2852 FTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFK-PGQIGPEELQ 2679
            FT FLQ+HGFTCGVDDL++    D +R ++L+  E +G+ VH EF+  K    I P  LQ
Sbjct: 805  FTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQ 864

Query: 2678 LEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTT 2499
            L I+K I S+ E+A  +LD KM + L    +R  S ILK LL+ G+LKP  KNCIS+MTT
Sbjct: 865  LNIEKKIRSNGEAA-LTLDRKMTSNLN---SRTSSGILKKLLSEGILKPSGKNCISLMTT 920

Query: 2498 TGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGL 2319
            +GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCFPPWD + RAGGFI DRFLT L
Sbjct: 921  SGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTAL 980

Query: 2318 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYY 2139
             PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+Y
Sbjct: 981  HPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHY 1040

Query: 2138 GEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQ 1962
            GEDGVDVHQTSF+  F AL  N+E +   +  Q   +S YI KLPE LE +A +F     
Sbjct: 1041 GEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKF----- 1095

Query: 1961 DKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPV 1782
              SK++ +GS                          EQ  F+ L++ KY+S LAQ GEPV
Sbjct: 1096 --SKQRNLGS-------------------------MEQADFLRLMEHKYVSCLAQPGEPV 1128

Query: 1781 GVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQW 1602
            GV+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+  IKTP +TCP    
Sbjct: 1129 GVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHD 1188

Query: 1601 RSKHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP---- 1443
            +S  + + L  ++KK+TVAD+++SM V    +++   QV   YKL++K+  ++  P    
Sbjct: 1189 KSMKDAICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTD 1248

Query: 1442 --LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIK--------NFMSSSISEVSNEADE 1293
              L D  +TL+  F+RELEDAI+NH+  LS++SGIK        N+ +SS    SN ++ 
Sbjct: 1249 ITLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSES 1308

Query: 1292 DDSGVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSED 1113
            +  G    +               DLGSD QKRK Q TDE+                 ED
Sbjct: 1309 EKKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDY---------------ED 1353

Query: 1112 G-EKGKSDG---DHLEDTENGKDEEAEHSEDN-DGASNADEVMSEAKSSGRKGRATSERI 948
            G E+   DG   + +E  E+G D +A  + +N   A+N++ +   +KS     +   +R 
Sbjct: 1354 GPEEETHDGELSEEIEGDEDGSDVDANENYNNVTDANNSEGLEKPSKSKTIDEKQNLKRE 1413

Query: 947  EMPKE-DSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQC 771
            +   E  +KK  R I +E KG  FE+ FRFT EPH+LL QIAQ+TAKKV I+  GK+ +C
Sbjct: 1414 KKKSEPTTKKYDRAIFVEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGEC 1473

Query: 770  KMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYS 591
            K +     E  VI+  K    R +    +     A++ SGV FK+FWE+ DDLD+  +YS
Sbjct: 1474 KAITC--KESGVIYYGKDGRKRIEISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYS 1531

Query: 590  NNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGS 411
            NN++AMLN YGVEAAR TIIREV+ VF  YG+ ++ RHL+LIAD+MTHTG YRPM+R GS
Sbjct: 1532 NNVHAMLNAYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGS 1591

Query: 410  ISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            I++S SPF+KM FETA  FIVEAA HG  DNLETPS+RICLGLPVKMGTGC +L+QKL++
Sbjct: 1592 IADSTSPFIKMCFETAGNFIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLEI 1651


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1774 bits (4596), Expect = 0.0
 Identities = 966/1746 (55%), Positives = 1203/1746 (68%), Gaps = 43/1746 (2%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G T+ VEAVRF F+T EEVR+HS +K+TN NLLD++++P+PGGLYD  +GPL++ +PCKS
Sbjct: 7    GATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKS 66

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CG    HC GHCGHIDLVSP YNPLLFN L+ +L + CF C  FR+ + EV+ CVSQL+L
Sbjct: 67   CGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKL 126

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQAF 4800
            I  G+ V AK+L    +                + N GS  S S V     N    K   
Sbjct: 127  IGNGDIVGAKRLDSDSADASSYS----------DYNEGSQESGSIV----HNSEAVKPKE 172

Query: 4799 WDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRSS 4620
            W S QL EAMSVLN FLK K  KC+NC+  NP I KP FGW H+N +   ++R N IR  
Sbjct: 173  WTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGC 232

Query: 4619 RLDVTHSGGGEDKPSSEVVNASDYSWKDDS------GTAEANSFLTASDSTKKPSKKDAK 4458
            ++  T S    D+  S + +A D S   +        T+E     +  +  K   KK   
Sbjct: 233  KMVDTFS----DEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQV 288

Query: 4457 RIKILNQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGY 4281
             ++ + Q      N FSGPLLPS+V+ I + LWENE  LCS I DIQQQ     GK  GY
Sbjct: 289  PLEFMKQ-----KNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGY 340

Query: 4280 SMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISR 4101
            SMFFLETILVPPIKFR P KGGDSVMEHP T+LL K+LQ+NI+LGNA+ NN + SK + R
Sbjct: 341  SMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVR 400

Query: 4100 L-MDLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISP 3924
            L MDLQQS+N+LFDSKTA SQ  +D +SGICQ LEKKEG+FRQKMMGKRVNFACRSVISP
Sbjct: 401  LWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISP 459

Query: 3923 DPYLSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLP 3744
            DPYL+VNEIGIPPYFALRLTYPERVTPWNV KLR A+ING E HPGAT YVD +ST +LP
Sbjct: 460  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLP 519

Query: 3743 ASKKMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIM 3564
             S+K R++ISRKLPSSRGA+ Q G N + EFEGKIV RHLQDGD+VLVNRQPTLHKPSIM
Sbjct: 520  PSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIM 579

Query: 3563 AHVVRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPT 3384
            AHVVRVLKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+
Sbjct: 580  AHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPS 639

Query: 3383 RGDTVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVD 3204
             G+ +R LIQDHIVSAVLLT ++TFL+R EF+QLLY SGV +    S  G   +KV +  
Sbjct: 640  NGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVST 699

Query: 3203 SEGLVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNG 3024
            SE  +  ++P I KP+PLWTGKQVI+++L+HITRGR P TV    KIP+++F     KN 
Sbjct: 700  SEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNK 759

Query: 3023 EEDEDQNA--------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQE 2904
            +   ++N                     E  +L+++N+LVRGVIDKAQF  +GLVHTVQE
Sbjct: 760  QSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQE 819

Query: 2903 LYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHC 2727
            LYGSN+AGILLS  SRLFT+FLQ+HGFTCGVDDL+I+   D +RK +LE  E    E H 
Sbjct: 820  LYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHY 879

Query: 2726 EFVKFK-PGQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLT 2550
            E    K   +  P ELQLEI++ I  D E+A  +LD KM + L N+ + +G  +L  LL+
Sbjct: 880  ELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLS 936

Query: 2549 AGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWD 2370
             GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD
Sbjct: 937  EGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWD 996

Query: 2369 FTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVC 2190
            + +RAGGFI+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ 
Sbjct: 997  WAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1056

Query: 2189 YDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK- 2013
            YD+TVRDADGSI+QF YGEDG+DVHQTSF+  F+AL  N++ + +K  +Q       +K 
Sbjct: 1057 YDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKI 1116

Query: 2012 LPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIE 1833
            LP+GL  +A +FI+E   K + ++I                            +   F+ 
Sbjct: 1117 LPDGLRSKAEQFIREEIKKYQHQKI----------------------------KPKDFLN 1148

Query: 1832 LVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1653
            L+K K+LSSLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 1149 LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1208

Query: 1652 ASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTY 1482
            AS  I+TP++TCP  + ++K + + L +++KK+TVAD++ESM+V +   ++    +   Y
Sbjct: 1209 ASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIY 1268

Query: 1481 KLII------KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSI 1320
            KL +      K  +   + + D    LK VFLRELEDAI+NH++ LS++SGIK FM  S 
Sbjct: 1269 KLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQ 1328

Query: 1319 SEVSNEADEDDSGVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXX 1140
               SNE DED S  R++E                  +D       A DE           
Sbjct: 1329 RNASNEMDEDVSEGRSRETK----------------NDDDDDDDDADDEERAEDLGASLA 1372

Query: 1139 XXXXELSEDGEKGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRAT 960
                E+    ++  +   ++  ++NGKDE ++ S + +  SN     S  + +G + +  
Sbjct: 1373 ALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNP---KSREEKTGSEPKRK 1429

Query: 959  SERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKI 780
              + +  +++S    R I   ++GL FEV F+   EPH+LLAQIA+KTAKKVYI+  GKI
Sbjct: 1430 KMKAKFVRKESD---RAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKI 1486

Query: 779  SQCKMVQYDPDEKTVIW---DDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLD 609
             QC++   D  E  V +   D KK+ +  D EK       A+  +GVDF +FW+M D +D
Sbjct: 1487 DQCRVT--DCSENQVFYYGEDPKKRKSPSDKEK-----IQALHTTGVDFGAFWKMEDHID 1539

Query: 608  LSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRP 429
            +  LYSN+I+AMLNTYGVEAAR TIIRE+  VF  YG+ ++ RHL+LIAD+MTH+G YRP
Sbjct: 1540 VRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRP 1599

Query: 428  MSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFEL 249
            MSR G I+ES+SPF KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTG F+L
Sbjct: 1600 MSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDL 1659

Query: 248  MQKLDV 231
            MQK+++
Sbjct: 1660 MQKVEI 1665


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1756 bits (4547), Expect = 0.0
 Identities = 960/1734 (55%), Positives = 1187/1734 (68%), Gaps = 31/1734 (1%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G T  V+AV F FLT +E+ R S VKITNP LL+ L  P+ GGLYDPA+GPLD+ S CKS
Sbjct: 7    GVTNSVKAVGFSFLTSDELLRSSRVKITNPILLNPLLNPVSGGLYDPALGPLDDKSLCKS 66

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQ + HC GH GHI+LVSP YNPL+FN+L++IL +TCF C  F +SR+EV+   SQ EL
Sbjct: 67   CGQGSKHCPGHFGHIELVSPVYNPLMFNILSSILQRTCFSCHHFHASRKEVEMRTSQFEL 126

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDST-VFSDGENHYEDKQA 4803
            I+KG+ + AK L                 I+  E N      +S  V   GEN       
Sbjct: 127  IMKGDIIRAKSLD---------------SIISDESNHSGDGDESQGVEQLGEN------- 164

Query: 4802 FWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRS 4623
             W S Q +EAMSVL +FL RK +KC+NC  +NP+I+KPTFGWFH+N L++ E R+N++R+
Sbjct: 165  -WSSLQFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVLSDDEARANTMRA 223

Query: 4622 SRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKIL 4443
                            SE +N  D S      T E +  +T++ + K+  +K  K    L
Sbjct: 224  LE--------------SETIN-DDMSLGGGETTEEED--ITSTGTAKRDKRKKGK----L 262

Query: 4442 NQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSMFFL 4266
            +  L  QN   SG LLPSQV+ IL  LWENE  LCSYI DIQ Q     GK  G+SMFFL
Sbjct: 263  SSKLAAQNK-LSGSLLPSQVKGILELLWENEARLCSYISDIQDQGF---GKKAGHSMFFL 318

Query: 4265 ETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDLQ 4086
            E I VPPIKFRPP KGGD VMEHP T+LL K+LQ NI+LG+AH+N  + SK++SR MDLQ
Sbjct: 319  ENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSKVLSRWMDLQ 378

Query: 4085 QSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSV 3906
            QS+N+LFD+KT+    Q +  +GICQ LEKKEGIFRQKMMGKRVNFACRSVISPDPYL+V
Sbjct: 379  QSVNLLFDNKTS---GQGEVAAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAV 435

Query: 3905 NEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMR 3726
            NEIGIPPYFALRL+YPERVTPWNV  LR A++NGP+ HPGAT Y D  +TVKLP + K+ 
Sbjct: 436  NEIGIPPYFALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKLL 495

Query: 3725 VAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3546
              ISRKLPSSRG +   G   + EFEGKIVYRHL+DGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 496  SFISRKLPSSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRV 555

Query: 3545 LKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 3366
            LKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R
Sbjct: 556  LKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIR 615

Query: 3365 GLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVE 3186
             LIQDHIVSA LLT K+TF+T   F QLLY SGV   G GS  G   +KV + +SE  + 
Sbjct: 616  ALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMF 675

Query: 3185 SLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TGDS 3036
               P IWKPEPLWTGKQVI+ALL +ITR   P TVE   KIP N+F          T D 
Sbjct: 676  LFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTRDK 735

Query: 3035 YKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSR 2856
             +N  E +D   E  LL++KN+LVRGV+DKAQFG +G++HTVQELYGS  AG LLSALSR
Sbjct: 736  SRNKVEPDD---EDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSR 792

Query: 2855 LFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ-IGPEEL 2682
            LFT FLQ+HGFTCGVDDL+I    D +R D+L   E++G+ VH EF+       I P  L
Sbjct: 793  LFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITL 852

Query: 2681 QLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMT 2502
            QL I+K I S+ E+A   LD KM + L    +R  S ILK LL+ G+LKP  KNCIS+MT
Sbjct: 853  QLNIEKKIRSNGEAALTYLDRKMTSNLN---SRTSSGILKDLLSDGILKPSGKNCISLMT 909

Query: 2501 TTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTG 2322
            T+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD + RAGGFI DRFLTG
Sbjct: 910  TSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTG 969

Query: 2321 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFY 2142
            L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+
Sbjct: 970  LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFH 1029

Query: 2141 YGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEV 1965
            YGEDGVDVH TSF+  F+AL  N+E +      Q   +S YI KLP+ L+E+A  F    
Sbjct: 1030 YGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFF--- 1086

Query: 1964 QDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEP 1785
            +D  K++ +GS                          ++ +F++L++ KY+S LAQ GE 
Sbjct: 1087 RDSLKQRNLGSL-------------------------KRAEFLKLMEHKYVSCLAQPGES 1121

Query: 1784 VGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQ 1605
            VGV+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+  IKTP +TCP   
Sbjct: 1122 VGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRS 1181

Query: 1604 WRSKHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP--- 1443
             +S  E + L  ++KK+TVAD+++SM V    +S+   QV   YKL++K+   +  P   
Sbjct: 1182 NKSMEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYS 1241

Query: 1442 ---LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFM------SSSISEVSNEADED 1290
               L D  DTL+  F+RELEDAIENH+  LS++SGIK F       S+S  +      E 
Sbjct: 1242 DITLEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGSES 1301

Query: 1289 DSGVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDG 1110
            ++  ++ +               DLGSD QKRK+Q TDE+                 EDG
Sbjct: 1302 ETKGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDY---------------EDG 1346

Query: 1109 -EKGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKE 933
             E+   DG   E+ EN +D   ++   +   S   + +SE+KS   K     E+ +  + 
Sbjct: 1347 PEEETHDGVLSEEIENDEDNVDDNMTLDASDSEGLDELSESKSIFEKDSLKREK-KKSRP 1405

Query: 932  DSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYD 753
             ++K  R + ++ KG+ F++ F+FT EP +LLA+IA ++AKKV I+ SG++ +CK V   
Sbjct: 1406 TTRKYDRAVFVKAKGMHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCK 1465

Query: 752  PDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAM 573
                    +D +K  R D          A++ SGV FK+FWE+ DDLD+  +YSNN++AM
Sbjct: 1466 ESGVMYYGEDSRK--RDDIPASVKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAM 1523

Query: 572  LNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLS 393
            LN YGVEAAR TIIREV+ VF  YG+ ++ RHL+LIAD+MTH+GGYRPM+R+GSI++  S
Sbjct: 1524 LNAYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTS 1583

Query: 392  PFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            PF+KM FETASKFIVEAA HG  DNLETPSSRICLGLPVKMGTGC +L+QKL++
Sbjct: 1584 PFIKMCFETASKFIVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLEI 1637


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1749 bits (4530), Expect = 0.0
 Identities = 960/1732 (55%), Positives = 1186/1732 (68%), Gaps = 28/1732 (1%)
 Frame = -1

Query: 5342 MGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCK 5163
            MG +E V+ V F F+T+EEVR+ S+VK+T P LLD + +P+ GGLYDPAMG LDE++ CK
Sbjct: 12   MGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCK 71

Query: 5162 SCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLE 4983
            SCGQR ++C GHCGHIDLVSP YNPLLF +L+N L  TCF C  FR+    V+NC + LE
Sbjct: 72   SCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLE 131

Query: 4982 LIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQA 4803
            LI+ GE  +AK+L          + EW         N  S T  S      E      + 
Sbjct: 132  LILDGEIAKAKEL----------EEEWM--------NSKSRTKSSHSMYTYERKNGQPET 173

Query: 4802 FWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRS 4623
             W S Q +EA+SV+ +FLK K   C+ C   +PKI KPTFGWFH+  LA  + R+N+IR 
Sbjct: 174  -WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRR 232

Query: 4622 SRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKIL 4443
            S            KP S    A   S  ++  T EA    T  D             + +
Sbjct: 233  S------------KPVSVSSGAEGVSSLEEETTTEA----TVED------------FEDV 264

Query: 4442 NQGLEDQNNYFSGPLLPSQVRDILRRLWENEPL-CSYIYDIQQQQCKLSGKATGYSMFFL 4266
            +  +  Q N+ SG LLPS+V+DIL+RLW+NE L CS+I DI QQ     G   G+SMFFL
Sbjct: 265  SPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFL 321

Query: 4265 ETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDLQ 4086
            E++LVPPIKFRPPAKGGDSVMEHP T+LL K+LQSNI+LGN H N +E SKI+   MDLQ
Sbjct: 322  ESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQ 381

Query: 4085 QSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSV 3906
            QSIN+LFDSK+A    + D + GICQ LEKKEG+FRQKMMGKRVNFACRSVISPDPYL+V
Sbjct: 382  QSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 441

Query: 3905 NEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKL--PASKK 3732
            NEIGIPPYFALRLTYPERVT WNV KLR A+INGPE HPGAT Y+D ++TVKL    S+K
Sbjct: 442  NEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRK 501

Query: 3731 MRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 3552
             R++ISRKLPSSRG +   G  D+ EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVV
Sbjct: 502  SRISISRKLPSSRGVVVDQGC-DDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVV 560

Query: 3551 RVLKGEKTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGD 3375
            RVLKGEKT+RMHYANCS +YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+
Sbjct: 561  RVLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGE 620

Query: 3374 TVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEG 3195
             +R LIQDHI+SAVLLT K+TFL   EFSQLLY SG+      +      +K+  +D + 
Sbjct: 621  PIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDA 680

Query: 3194 LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFT---GDSYKNG 3024
             +  +LP +WKPEPLWTGKQV+TALL+HIT+G  P  VE   KIP+ +     G+S K  
Sbjct: 681  EMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEGNSKKKE 740

Query: 3023 EEDEDQNA-----EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALS 2859
                D+       + +LL++KNELVRGVIDKAQFG +GLVHTVQELYGSN+AG+LLS +S
Sbjct: 741  HTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMS 800

Query: 2858 RLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ-IGPEE 2685
            RLFT+FLQ HGFTCGVDDL+++   D +R+ +L+  E +GE+VH  F+K K G+ + P  
Sbjct: 801  RLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMT 860

Query: 2684 LQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVM 2505
            LQL I+K I  + E+A  SLD KM ++L  +     S++LK LL+ GLLKP  KNCIS+M
Sbjct: 861  LQLNIEKTISYNGEAALTSLDRKMTSQLNERTGN--SKVLKDLLSEGLLKPSVKNCISLM 918

Query: 2504 TTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLT 2325
            TT+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD+ SRAGGFI DRFLT
Sbjct: 919  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 978

Query: 2324 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQF 2145
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+IQF
Sbjct: 979  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQF 1038

Query: 2144 YYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFIQE 1968
             YGEDGVDVH+T+F+  F+AL  N++ + +   +Q  ++N +I +LP  L E+       
Sbjct: 1039 QYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNS 1098

Query: 1967 VQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGE 1788
            +   SK+K  G  +++                          FI L++ KYLSSLAQ GE
Sbjct: 1099 L---SKDKVPGLVLKE-------------------------DFIRLLENKYLSSLAQPGE 1130

Query: 1787 PVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFS 1608
            PVGV+AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS  IKTPI+TCP  
Sbjct: 1131 PVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLK 1190

Query: 1607 QWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE----- 1452
            +  S      L +++KK+TVAD++ESM+V +   S   R++   YKL I     E     
Sbjct: 1191 EGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQH 1250

Query: 1451 -FVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVR 1275
              +   D+ +TL++VFL ELE  IE  ++ LS+++GIK F+  S S+ S+E DE  S   
Sbjct: 1251 GHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSS-- 1308

Query: 1274 TQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKS 1095
             QE               DLGSD +K+K QA DEM                S   E    
Sbjct: 1309 RQEEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKES-STGFESEVD 1367

Query: 1094 DGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKKIR 915
             GD  E T N   E  + S     + N  E++  +KS   K + T    E  K  S+ +R
Sbjct: 1368 QGDEAEITNNDMIEIVKDS----ASENQPEIVDVSKSMS-KEKTTETSKEKKKVKSELVR 1422

Query: 914  ----RGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPD 747
                R I +E K   FEV F+FT EPH LL+QI Q+ A+KV I+RSGKI QC+  Q    
Sbjct: 1423 KETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQ--QITCK 1480

Query: 746  EKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLN 567
            E  VI+       R + + ++     A++ SGVDFK+ WEM D+LD+  +YSN+I+AML 
Sbjct: 1481 EGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQ 1540

Query: 566  TYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPF 387
            TYGVEAARATIIRE++ +F  YG+ ++ RHLSL+ADYMTH+GGYRPMSR G IS+S+SPF
Sbjct: 1541 TYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPF 1600

Query: 386  LKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
             +M+FETA KFIV+AA HG  DNLETPSSRICLGLPVKMGTG F+LMQK++V
Sbjct: 1601 SRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1652


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1746 bits (4523), Expect = 0.0
 Identities = 956/1734 (55%), Positives = 1185/1734 (68%), Gaps = 31/1734 (1%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G +E V+ V F F+T+EEVR+ S+VK+T P LLD + +P+ GGLYDPAMG LDE++ CKS
Sbjct: 7    GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 66

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQR ++C GHCGHIDLVSP YNPLLF +L+N L  TCF C  FR+    V+NC + LEL
Sbjct: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 126

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQAF 4800
            I+ GE  +AK+L          + EW         N  S T  S      E      +  
Sbjct: 127  ILDGEIAKAKEL----------EEEWM--------NSKSRTKSSHSMYTYERKNGQPET- 167

Query: 4799 WDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRSS 4620
            W S Q +EA+SV+ +FLK K   C+ C   +PKI KPTFGWFH+  LA  + R+N+IR S
Sbjct: 168  WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRS 227

Query: 4619 RLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKILN 4440
                        KP S    A   S  ++  T EA    T  D             + ++
Sbjct: 228  ------------KPVSVSSGAEGVSSLEEETTTEA----TVED------------FEDVS 259

Query: 4439 QGLEDQNNYFSGPLLPSQVRDILRRLWENEPL-CSYIYDIQQQQCKLSGKATGYSMFFLE 4263
              +  Q N+ SG LLPS+V+DIL+RLW+NE L CS+I DI QQ     G   G+SMFFLE
Sbjct: 260  PEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLE 316

Query: 4262 TILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDLQQ 4083
            ++LVPPIKFRPPAKGGDSVMEHP T+LL K+LQSNI+LGN H N +E SKI+   MDLQQ
Sbjct: 317  SVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQ 376

Query: 4082 SINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVN 3903
            SIN+LFDSK+A    + D + GICQ LEKKEG+FRQKMMGKRVNFACRSVISPDPYL+VN
Sbjct: 377  SINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 436

Query: 3902 EIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKL--PASKKM 3729
            EIGIPPYFALRLTYPERVT WNV KLR A+INGPE HPGAT Y+D ++TVKL    S+K 
Sbjct: 437  EIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKS 496

Query: 3728 RVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 3549
            R++ISRKLPSSRG +   G  D+ EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVR
Sbjct: 497  RISISRKLPSSRGVVVDQGC-DDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 555

Query: 3548 VLKGEKTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDT 3372
            VLKGEKT+RMHYANCS +YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ 
Sbjct: 556  VLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEP 615

Query: 3371 VRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGL 3192
            +R LIQDHI+SAVLLT K+TFL   EFSQLLY SG+      +      +K+  +D +  
Sbjct: 616  IRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAE 675

Query: 3191 VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDE 3012
            +  +LP +WKPEPLWTGKQV+TALL+HIT+G  P  VE   KIP+ +F      N    +
Sbjct: 676  MLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKK 735

Query: 3011 DQNA-----------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSA 2865
             ++            + +LL++KNELVRGVIDKAQFG +GLVHTVQELYGSN+AG+LLS 
Sbjct: 736  KEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSV 795

Query: 2864 LSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ-IGP 2691
            +SRLFT+FLQ HGFTCGVDDL+++   D +R+ +L+  E +GE+VH  F+K K G+ + P
Sbjct: 796  MSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDP 855

Query: 2690 EELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCIS 2511
              LQL I+K I  + E+A  SLD KM ++L  +     S++LK LL+ GLLKP  KNCIS
Sbjct: 856  MTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGN--SKVLKDLLSEGLLKPSVKNCIS 913

Query: 2510 VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRF 2331
            +MTT+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD+ SRAGGFI DRF
Sbjct: 914  LMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRF 973

Query: 2330 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 2151
            LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+I
Sbjct: 974  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVI 1033

Query: 2150 QFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFI 1974
            QF YGEDGVDVH+T+F+  F+AL  N++ + +   +Q  ++N +I +LP  L E+     
Sbjct: 1034 QFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIY 1093

Query: 1973 QEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQS 1794
              +   SK+K  G  +++                          FI L++ KYLSSLAQ 
Sbjct: 1094 NSL---SKDKVPGLVLKE-------------------------DFIRLLENKYLSSLAQP 1125

Query: 1793 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCP 1614
            GEPVGV+AAQS+GEPSTQMTLNTFH  GRGEMNVTLGI RLQEILMTAS  IKTPI+TCP
Sbjct: 1126 GEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCP 1185

Query: 1613 FSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE--- 1452
              +  S      L +++KK+TVAD++ESM+V +   S   R++   YKL I     E   
Sbjct: 1186 LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNA 1245

Query: 1451 ---FVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSG 1281
                +   D+ +TL++VFL ELE  IE  ++ LS+++GIKNF+  S S+ S+E DE  S 
Sbjct: 1246 QHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSS 1305

Query: 1280 VRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKG 1101
             R +E               DLGSD++K+K QA DEM                S   E  
Sbjct: 1306 -RQKENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKES-STGFESE 1363

Query: 1100 KSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKK 921
               GD  E T N   E  + S     + N  E++  +KS   K + T    E  K  S+ 
Sbjct: 1364 VDQGDEAEITNNDMIEIVKDS----ASENQPEIVDVSKSMS-KEKTTETSKEKKKVKSEL 1418

Query: 920  IR----RGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYD 753
            +R    R I +E K   FEV F+FT EPH LL+QI Q+ A+KV I+RSGKI QC+  Q  
Sbjct: 1419 VRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQ--QIT 1476

Query: 752  PDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAM 573
              E  VI+       R + + ++     A++ SGVDFK+ WEM D+LD+  +YSN+I+AM
Sbjct: 1477 CKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAM 1536

Query: 572  LNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLS 393
            L TYGVEAARATIIRE++ +F  YG+ ++ RHLSL+ADYMTH+GGYRPMSR G IS+S+S
Sbjct: 1537 LQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSIS 1596

Query: 392  PFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            PF +M+FETA KFIV+AA HG  DNLETPSSRICLGLPVKMGTG F+LMQK++V
Sbjct: 1597 PFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1650


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1739 bits (4504), Expect = 0.0
 Identities = 945/1737 (54%), Positives = 1187/1737 (68%), Gaps = 32/1737 (1%)
 Frame = -1

Query: 5348 ANMGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSP 5169
            A  G T  V+AV F FLTDEE+ + S VKITNP LLD L  P+ GGLYDPA+GP  E SP
Sbjct: 4    ATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHEKSP 63

Query: 5168 CKSCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQ 4989
            C+SCGQ +YHC GH GHI+LVSP YNPL+F+ML+N+L +TCF C  F++SR EV+   +Q
Sbjct: 64   CQSCGQNSYHCPGHFGHIELVSPVYNPLMFSMLSNVLRRTCFSCHHFQASRNEVELRANQ 123

Query: 4988 LELIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDK 4809
            LELI+KG   +AK L       D   ++   E  DL D   S  S       GEN     
Sbjct: 124  LELIMKGNIAKAKNL-------DAINLD---ESADLSDGNDSQCSSDEQL--GEN----- 166

Query: 4808 QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSI 4629
               W S Q +EAMSVL +FLK++ RKC+NC  INPKI KPTFGWFHV  L+  + R+N I
Sbjct: 167  ---WTSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKALSAAQARANVI 223

Query: 4628 RSSRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIK 4449
                       G +   +SE+++        D+   E    +T+ D+    +K+  K  +
Sbjct: 224  ----------SGIDASLASEIIHDDISLGNGDTTDVED---ITSGDTANSNAKRQNKLAR 270

Query: 4448 ILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSMF 4272
                     +N  SG LLPSQV+ IL  LWENE  LC YI DIQ Q     GK  G+SMF
Sbjct: 271  ---------HNKLSGSLLPSQVQGILELLWENEARLCLYISDIQGQGF---GKKAGHSMF 318

Query: 4271 FLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMD 4092
            FL+ I VPPIKFRPP KG D V EH  T+LL ++L+SNI+LG AH+N ++ S ++ R MD
Sbjct: 319  FLDNIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMD 378

Query: 4091 LQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 3912
            LQ+S+N+LFD+KTA+ Q  KD  +GICQ LEKKEGIFRQKMMGKRVN+ACRSVISPDPYL
Sbjct: 379  LQRSVNLLFDNKTASGQ--KDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYL 436

Query: 3911 SVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKK 3732
            +VNEIGIPPYFALRLTYPERVTPWNV +LR A++NGPE HPGAT Y D  ST+KLP  ++
Sbjct: 437  AVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRR 496

Query: 3731 MRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 3552
             R   SRKL SSRG +  +G   + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVV
Sbjct: 497  SRSLTSRKLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVV 556

Query: 3551 RVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDT 3372
            RVLKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD 
Sbjct: 557  RVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDP 616

Query: 3371 VRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGL 3192
            +R LIQDHIVSA LLT K+TFL+  EF+QLLY SGV   G G  PG   +K+ + +S+  
Sbjct: 617  IRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSE 676

Query: 3191 VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TG 3042
            +    P I+KPEPLWTGKQVI+ALL +IT+G  P TVE   KIP ++F          T 
Sbjct: 677  MFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTK 736

Query: 3041 D-SYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSA 2865
            D S K  E DED+     LL+++N+LVRGV+DKAQFG +G+VHTVQE YGSN+AGILLSA
Sbjct: 737  DTSIKKDEPDEDK-----LLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSA 791

Query: 2864 LSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPG-QIGP 2691
            LSRLFT FLQ+HGFTCGVDDL++    D++R ++LE  E++G+ VH EF+    G  I P
Sbjct: 792  LSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDP 851

Query: 2690 EELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCIS 2511
              +QL ++K I S+ E+A   LD KM   ++N  +R  + +LK LL+ G+LKP  KN IS
Sbjct: 852  ITMQLNVEKKIRSNGEAAITYLDRKM---ISNLNSRTSTGVLKVLLSEGILKPSGKNWIS 908

Query: 2510 VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRF 2331
            +MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF  WD + RAGGFI DRF
Sbjct: 909  LMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRF 968

Query: 2330 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 2151
            LT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSII
Sbjct: 969  LTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSII 1028

Query: 2150 QFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFI 1974
            QF+YGEDGVDVHQTSF+  F+AL  N+E +      +   +S YI KLP+ L+ +A +FI
Sbjct: 1029 QFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDKSSPYINKLPDALKGKAEKFI 1088

Query: 1973 QEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQS 1794
              +   SK++  GS                              F+ L++ KY+SSLAQ 
Sbjct: 1089 --LDSSSKQRNSGS-------------------------MTHTNFLHLMEHKYVSSLAQP 1121

Query: 1793 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCP 1614
            GEPVGV+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTP +TCP
Sbjct: 1122 GEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCP 1181

Query: 1613 FSQWRSKHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP 1443
                +S  + + L  ++KK+TVAD++ESM V    +++   ++   YKL++K+   +  P
Sbjct: 1182 LRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYP 1241

Query: 1442 ------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSG 1281
                  L D  +TL+  F+R LEDAIEN++  L+++SGI NF + +    SN A++D S 
Sbjct: 1242 KYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSN 1301

Query: 1280 VRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSED--GE 1107
             +T +               DLG D QK K+Q  D++              ELSED  G 
Sbjct: 1302 GKTNDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGV 1361

Query: 1106 KGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKED- 930
            +   D ++++D  +GKD+E       DG  + D    E   + +K    +   + P+E+ 
Sbjct: 1362 EDAKDNEYVKDDGDGKDDE-------DGKGDEDGSDIEVNENDKKVTLGANYSQGPEENS 1414

Query: 929  -----SKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKM 765
                 SKK  R + ++ +   FE+ F+FT EPH+LLAQIAQKTA+KV I+  GK+ QCK 
Sbjct: 1415 KSQPVSKKFDRRVYVKFEKRHFEIHFKFTGEPHILLAQIAQKTAEKVCIQNFGKVGQCKA 1474

Query: 764  VQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNN 585
            +     E  VI+  +    R +          A++ SG+ FKSFWEM DDL++  +YSNN
Sbjct: 1475 ITC--KESGVIYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNN 1532

Query: 584  INAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSIS 405
            ++A+L+TYGVEAA+ TIIREV+ VF  YG+ ++ RHL LIAD+MTH+G YRPMSR GSI+
Sbjct: 1533 VHAILSTYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIA 1592

Query: 404  ESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLD 234
            +S SPFLK+ FETAS FIVEAA HG  DNL++PS+RICLGLPVKMGTGC EL+QKL+
Sbjct: 1593 DSTSPFLKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1649


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1736 bits (4497), Expect = 0.0
 Identities = 942/1743 (54%), Positives = 1194/1743 (68%), Gaps = 38/1743 (2%)
 Frame = -1

Query: 5348 ANMGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSP 5169
            A  G T  V+AV F FLTDEE+ + S VKITNP LLD L  P+ GGLYDPA+GP  E SP
Sbjct: 4    ATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHEKSP 63

Query: 5168 CKSCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQ 4989
            C+SCGQ +YHC GH GHI+LVSPAYNPL+F+ML+N+L +TCF C  F++SR+EV+   +Q
Sbjct: 64   CQSCGQNSYHCPGHFGHIELVSPAYNPLMFSMLSNVLRRTCFSCHHFQASRKEVELRANQ 123

Query: 4988 LELIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDK 4809
            LELI+KG   +AK L       D+  ++ + ++ D +D++ S          GEN     
Sbjct: 124  LELIMKGNIAKAKNL-------DEINLDESADLCDGDDSQCSSAEQL-----GEN----- 166

Query: 4808 QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSI 4629
               W S Q +EAMSVL +FLK++ RKC+NC +INPKI  PTFGWFHV  L+  + R+N I
Sbjct: 167  ---WTSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKALSAAQARANVI 223

Query: 4628 RSSRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIK 4449
                       G +   +SE+++        D+   E    +T+ D     +K+  K  +
Sbjct: 224  ----------SGNDVSLASEIIHDDISLGNGDTTDVED---ITSGDIANSNAKRHNKEKQ 270

Query: 4448 ILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSMF 4272
            I +  L       +G LLPSQV+ IL  LWEN+  LC YI DIQ       GK  G+SMF
Sbjct: 271  ISSHTL-------AGSLLPSQVQRILELLWENDARLCLYISDIQGLGI---GKKAGHSMF 320

Query: 4271 FLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMD 4092
            FLE I VPPIKFRPP KG D V EH  T+LL ++L+SNI+LG AH+N ++ S ++ R MD
Sbjct: 321  FLENIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMD 380

Query: 4091 LQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 3912
            LQ+S+N+LFD+KTA+ ++QKD  +GICQ LEKKEGIFRQKMMGKRVN+ACRSVISPDPYL
Sbjct: 381  LQRSVNLLFDNKTASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYL 440

Query: 3911 SVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKK 3732
            +VNEIGIPPYFALRLTYPERVTPWNV +LR A++NGPE HPGAT Y D  ST+KLP  ++
Sbjct: 441  AVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRR 500

Query: 3731 MRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 3552
             R   SR+L SSRG +  +G   + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVV
Sbjct: 501  SRSLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVV 560

Query: 3551 RVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDT 3372
            RVLKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD 
Sbjct: 561  RVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDP 620

Query: 3371 VRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGL 3192
            +R LIQDHIVSA LLT K+TFL+  EF+QLLY SGV   G G  PG   +K+ + +S+  
Sbjct: 621  IRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSE 680

Query: 3191 VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TG 3042
            +    P I+KPEPLWTGKQVI+ALL +IT+G  P TVE   KIP ++F          T 
Sbjct: 681  MFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTK 740

Query: 3041 D-SYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSA 2865
            D S K  E DED+     LL++KN+LVRGV+DKAQFG +G+VHTVQE YGSN+AG LLSA
Sbjct: 741  DTSIKKDEPDEDK-----LLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSA 795

Query: 2864 LSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPG-QIGP 2691
            LSRLFT FLQ+HGFTCGVDDL++    D++R ++LE  E++G+ VH EF+    G  I P
Sbjct: 796  LSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDP 855

Query: 2690 EELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCIS 2511
              +QL ++K I S+ E+A   LD KM   ++N  +R  S +LK LL+ G+LKP  KN IS
Sbjct: 856  ITMQLNVEKKIRSNGEAAITYLDRKM---ISNLNSRTSSGVLKELLSEGILKPSGKNWIS 912

Query: 2510 VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRF 2331
            +MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF  WD + RAGGFI DRF
Sbjct: 913  LMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRF 972

Query: 2330 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 2151
            LT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSII
Sbjct: 973  LTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSII 1032

Query: 2150 QFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFI 1974
            QF+YGEDGVDVHQTSF+  F+AL  N+E +      +   +S YI KLP+ L+ +A +FI
Sbjct: 1033 QFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAEKFI 1092

Query: 1973 QEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQS 1794
            ++    SK++  GS                              F++L++ KY+SSLAQ 
Sbjct: 1093 RD--SSSKQRNSGS-------------------------MTHTNFLQLMEHKYVSSLAQP 1125

Query: 1793 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCP 1614
            GEPVGV+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTP +TCP
Sbjct: 1126 GEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCP 1185

Query: 1613 FSQWRSKHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP 1443
                +S  + + L  ++KK+TVAD++ESM V    +++   ++   YKL++K+   +  P
Sbjct: 1186 LRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYP 1245

Query: 1442 ------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSG 1281
                  L D  +TL+  F+R LEDAIEN++  L+++SGI NF + +    SN A++D S 
Sbjct: 1246 KYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSN 1305

Query: 1280 VRT--QEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSED-- 1113
             +T   +               DLG D QK K+Q  D++              ELSED  
Sbjct: 1306 GKTNDDDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLE 1365

Query: 1112 GEKGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKE 933
            G +   D +H++D  +GKD+E       DG  + D    E   + +K        + P+E
Sbjct: 1366 GVEDAKDNEHVKDDGDGKDDE-------DGKGDEDGSDIEVNENDKKVTLGVNYSQGPEE 1418

Query: 932  D------SKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQ----IAQKTAKKVYIKRSGK 783
            +      SKK  R + ++ +   FE+ F+FT EPH+LLAQ    IAQKTA+KV I+  GK
Sbjct: 1419 NSKSQPVSKKFDRRVYVKFEKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGK 1478

Query: 782  ISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLS 603
            + QCK +     E  VI+  +    R +          A++ SG+ FKSFWEM DDL++ 
Sbjct: 1479 VGQCKAITC--KESGVIYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVR 1536

Query: 602  RLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMS 423
             +YSNN++A+L+TYGVEAA+ TIIREV+ VF  YG+ ++ RHL LIAD+MTH+G YRPMS
Sbjct: 1537 YVYSNNVHAILSTYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMS 1596

Query: 422  RHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQ 243
            R GSI++S SPFLK+ FETAS FIVEAA HG  DNL++PS+RICLGLPVKMGTGC EL+Q
Sbjct: 1597 RKGSIADSTSPFLKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQ 1656

Query: 242  KLD 234
            KL+
Sbjct: 1657 KLE 1659


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1662 bits (4305), Expect = 0.0
 Identities = 913/1747 (52%), Positives = 1175/1747 (67%), Gaps = 41/1747 (2%)
 Frame = -1

Query: 5348 ANMGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPL-DESS 5172
            AN G T  +E+V F FLT+EE+ + S VK+T+ NL + +  P+ GGLYDPA GPL D  S
Sbjct: 4    ANEGATNAIESVAFSFLTNEELLKSSRVKVTDTNLCNNIGHPVRGGLYDPAFGPLLDNRS 63

Query: 5171 PCKSCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVS 4992
             C+SCG    HC+GH GHI+LVSP YNPL+F  L  ILN+TCF C  FR+SR EV    S
Sbjct: 64   NCESCGMSKDHCSGHFGHIELVSPVYNPLMFLFLGKILNRTCFSCHYFRASRDEVKRRAS 123

Query: 4991 QLELIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYED 4812
            QLELI+KG   +AK LG       + K+   ++ VD +D       D + +S  E   E 
Sbjct: 124  QLELILKGNISKAKSLG-------EIKLNETIDSVDDDD-------DDSQWSGAEQLGES 169

Query: 4811 KQAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNS 4632
                W S Q +EAMSV+ EFL +  +KC NC  I+PKI KPTFG F+V  L++ + R+N 
Sbjct: 170  ----WTSLQFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVKALSSVQARANV 225

Query: 4631 IRSSRL--------DVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKP 4476
            I S++         D+T  G G    ++++++                            
Sbjct: 226  ISSAKAADVQADEEDITSGGAGNSNGNNQILS---------------------------- 257

Query: 4475 SKKDAKRIKILNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLS 4299
                   IK++ Q      +  SG LLPSQV+++++ LW+NE  LCS+I DIQ Q     
Sbjct: 258  -------IKLVEQ------SSLSGSLLPSQVQEMIKLLWKNESRLCSHISDIQDQGF--- 301

Query: 4298 GKATGYSMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAER 4119
            GK  G+SMFFLE I VPPIKFRPP K GD+V EHP T+LL K+L+SNI+L +AH   ++ 
Sbjct: 302  GKKAGHSMFFLENIFVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNISLADAHRTKSDA 361

Query: 4118 SKIISRLMDLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACR 3939
              I+ R  DLQ S+N+LFD+KT+  ++QKD  SGICQ L+KKEGIFRQKMMGKRVN+ACR
Sbjct: 362  YYILRRWQDLQGSVNLLFDNKTSL-RSQKDA-SGICQLLDKKEGIFRQKMMGKRVNYACR 419

Query: 3938 SVISPDPYLSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVS 3759
            SVISPDPYL+VNEIGIPPYFALRLTYPERVTPWN  KL  A++NGP+ HPGA  Y D  S
Sbjct: 420  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTS 479

Query: 3758 TVKLPASKKMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLH 3579
            T++L   K +R + SR+L SSRG +   G   E EFEGK+VYRHL+DGD+VLVNRQPTLH
Sbjct: 480  TLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLH 539

Query: 3578 KPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQ 3399
            KPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN Q
Sbjct: 540  KPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQ 599

Query: 3398 YIVPTRGDTVRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRK 3219
            Y+ PT GD +R LIQDHIVSA LLT K+TFL+  EF+QLLY SGV   G GS      +K
Sbjct: 600  YVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQK 659

Query: 3218 VSLVDSEGLVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF--- 3048
            V + +SE  +    P I+KPEPLWTGKQVI+ALL +IT+GR P TVE   KIP ++F   
Sbjct: 660  VLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQ 719

Query: 3047 TGDSYKNGEED--EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIL 2874
            TG+  K+ ++   +    E  LL+++N+LVRGV+DKAQFG +G+VHTVQE YGSN+AGIL
Sbjct: 720  TGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGIL 779

Query: 2873 LSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ- 2700
            LSALSRLFT FLQ+HGFTCGVDDL+I    D++R ++LE  E++G+ VH EF+     + 
Sbjct: 780  LSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESEN 839

Query: 2699 IGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKN 2520
            I P  +QL ++K I S+ E+A   LD KM   ++N  +R  S +LK LL+ G LKP  KN
Sbjct: 840  IDPITMQLNVEKKIRSNGEAAITYLDRKM---ISNLNSRTSSGVLKELLSKGSLKPSGKN 896

Query: 2519 CISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFIT 2340
             IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCFP WD + RAGGFI 
Sbjct: 897  WISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFII 956

Query: 2339 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADG 2160
            DRFLT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD+TVRD+DG
Sbjct: 957  DRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDG 1016

Query: 2159 SIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEAR 1983
            SIIQF+YGEDGVDVHQTSF+  F+AL  N+E I      Q   +S YI KLP+ L+ +A 
Sbjct: 1017 SIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAE 1076

Query: 1982 RFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSL 1803
             FI++   K +                            ++  ++  F+++++ KY+SSL
Sbjct: 1077 NFIRDFSSKQR---------------------------NSSSMKEADFLQVMEHKYVSSL 1109

Query: 1802 AQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPIL 1623
            AQ GEPVGV+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ AS  IKTP +
Sbjct: 1110 AQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFM 1169

Query: 1622 TCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTE 1452
            TCP    +S  + + L  ++KK+TVAD++ESM V    +++   ++   YKL +K+   +
Sbjct: 1170 TCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPK 1229

Query: 1451 FVP------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFM-------------- 1332
              P      L D  +TL+  F+RELEDAIENH+  L+R+SGIK+F               
Sbjct: 1230 HYPKYTDVTLEDWEETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLDNDHS 1289

Query: 1331 SSSISEVSNEADEDDSGVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXX 1152
            + S S  + + D+DD    T++A                G D QK KQ+ATDE+      
Sbjct: 1290 NESASNQNGQTDDDDEVGDTEDAEED-------------GFDAQKSKQRATDEVDYDDGP 1336

Query: 1151 XXXXXXXXELSEDGEKGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRK 972
                      + DGEK     + +E +E+GKD+E ++  + +G  +  EV    K+   +
Sbjct: 1337 EEE-------THDGEK----SEDVEVSEDGKDDEDDNGVEVNGDDSDIEVNDSDKNVTLE 1385

Query: 971  GRATSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKR 792
              + S++ +  +  SKK  R + ++  G+ FE+ F+F  EPH+LLAQIAQ+TA+KV I+ 
Sbjct: 1386 ETSKSKKRKF-EPASKKYDRRVYVKAGGMRFEIHFKFIGEPHILLAQIAQRTAEKVCIQN 1444

Query: 791  SGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDL 612
             GK+ QCK +     E  VI+  +    R D          A++ SG+ FK+FWEM DDL
Sbjct: 1445 FGKVGQCKAITC--KESGVIYYGEDDSKRDDIPSSVKEKIPALQTSGIHFKTFWEMEDDL 1502

Query: 611  DLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYR 432
             +  +YSN+++A+L  YGVEAA+  IIREV+ VF  YG+ ++ RHL LIAD+MTH+G YR
Sbjct: 1503 KVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGISVNIRHLMLIADFMTHSGSYR 1562

Query: 431  PMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFE 252
            P++R G I++S SPF+K+S+ETAS FIVEAA HG  D LETPSSRICLGLPVKMGTGC +
Sbjct: 1563 PLTRSG-IADSTSPFVKISYETASNFIVEAARHGQVDTLETPSSRICLGLPVKMGTGCID 1621

Query: 251  LMQKLDV 231
            L+QKL++
Sbjct: 1622 LIQKLEI 1628


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1648 bits (4267), Expect = 0.0
 Identities = 911/1737 (52%), Positives = 1171/1737 (67%), Gaps = 34/1737 (1%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G ++VVE+VRF F+T+++VR+HS +K+T+P LLD +E+P+PGGLYDP MGPL++   CKS
Sbjct: 9    GASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPLNDKEACKS 68

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQ    C GHCGHI+LV P Y+PLLF++L N L +TCF C  F +   +V  CVSQL+L
Sbjct: 69   CGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKPNDVKKCVSQLKL 128

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYED---K 4809
            I+KG+ V AK+L ++         +  +E+          + +S V +D     ED   +
Sbjct: 129  IMKGDIVSAKQLEVKSDSTSTNSED--IEV----------SCESGVTNDSSQECEDPDME 176

Query: 4808 QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSI 4629
               W S Q AE  +V+  F+K   ++C  C+  NPK+ KP FGW  +  +  + + +N I
Sbjct: 177  DQRWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGMNASAVGANLI 236

Query: 4628 RSSRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIK 4449
            R  ++          K +S V N       DDSG    ++   A DS K+  +K  +  K
Sbjct: 237  RGLKVK---------KSTSSVENP------DDSGI---DALSEAEDSDKEKREKSTEIAK 278

Query: 4448 ILNQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGYSMF 4272
               +  + + +     LLPS+VR IL+ LWENE   CS+I D+ Q       +   YSMF
Sbjct: 279  EFEKQKDTKRD-----LLPSEVRAILKNLWENEHEYCSFIGDLWQS----GSEKIDYSMF 329

Query: 4271 FLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMD 4092
            FLE++LVPPIKFRPP KGGDSVMEHP T+ L K+L SNI LGNA  N  ++SK+ISR M+
Sbjct: 330  FLESVLVPPIKFRPPTKGGDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSKVISRWMN 389

Query: 4091 LQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYL 3912
            LQ+S+NVLFDSK A+ Q+QKDG SGICQ LEKKEG+FRQKMMGKRVN ACRSVISPDPY+
Sbjct: 390  LQESVNVLFDSKAASVQSQKDG-SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYI 448

Query: 3911 SVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKK 3732
            +VNEIGIPP FAL+L YPERVTPWNV KLR A+INGP++HPGAT Y D +STVKLP+S K
Sbjct: 449  AVNEIGIPPCFALKLIYPERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVK 508

Query: 3731 MRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 3552
             R AI+ KL SSRGA T+ G   ++ FEGK+VYR ++DGD+VLVNRQPTLHKPS+MAH+V
Sbjct: 509  ERTAIANKLLSSRGATTELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIV 568

Query: 3551 RVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDT 3372
            RVLKGEKTLR+HYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY  P+ GD 
Sbjct: 569  RVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDP 628

Query: 3371 VRGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGL 3192
            +R LIQDHIVS+VLLT ++TFL +  F+QLL+ SGV      S  G   +KV++  S+  
Sbjct: 629  LRALIQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAE 688

Query: 3191 VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TG 3042
            + +++P I KP PLWTGKQVIT +LN IT+G  P TVE   K+P ++F          TG
Sbjct: 689  LLTVMPAILKPVPLWTGKQVITTVLNLITKGHPPFTVEKATKLPVDFFKCRSREVKPNTG 748

Query: 3041 DSYKNGEEDEDQNAEHN---LLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILL 2871
            D  K  + DE    + N   LL+ KNE V GVIDKAQF  FG+VHTV ELYGSN+AG LL
Sbjct: 749  DLTKKKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLL 808

Query: 2870 SALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKL-EGEDVGEEV-HCEFVKFKPGQI 2697
            S  SRLFT FLQIHGFTCGVDDLIIL   D +R  +L E E VGE V    F      QI
Sbjct: 809  SVFSRLFTAFLQIHGFTCGVDDLIILKDMDEERTKQLQECEKVGERVLRKTFGIDVDRQI 868

Query: 2696 GPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNC 2517
             P++++  I++++  D ESA ASLD  + N L N+ + +G  ++  LL+ GLLK   KNC
Sbjct: 869  DPQDMRSRIERILYEDGESALASLDRSIVNDL-NQCSSKG--VMNDLLSDGLLKTPGKNC 925

Query: 2516 ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITD 2337
            IS+MT +GAKGS VNFQQIS++LGQQ+LEGKRVPRMVSGKTLPCF PWD++ RAGGFI+D
Sbjct: 926  ISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISD 985

Query: 2336 RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGS 2157
            RFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDADGS
Sbjct: 986  RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGS 1045

Query: 2156 IIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ--RQFNSYIEKLPEGLEEEAR 1983
            IIQF YGEDGVDVH++SF+  FK L  N++ + Q+         +SYI  LP  L+++A 
Sbjct: 1046 IIQFQYGEDGVDVHRSSFIGKFKELTVNQDMVLQRCSEDMLSGSSSYISDLPISLKKDAE 1105

Query: 1982 RFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSL 1803
            +F++ +                        N+ +++K       Q + ++LVK KY  SL
Sbjct: 1106 KFVEAMP----------------------MNERIASK----FVRQEELLKLVKSKYFESL 1139

Query: 1802 AQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPIL 1623
            AQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTPI+
Sbjct: 1140 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIM 1199

Query: 1622 TCPFSQWRSKHEVVSLVSRVKKVTVADLVESMD---VQLSIHPRQVARTYKLIIKVKDTE 1452
            TCP  + ++K +   +  +++K+TVAD+++ M+   V  +IH   +   +KL I +   E
Sbjct: 1200 TCPLLKGKTKEDANDITDKLRKITVADIIKDMELSVVPYTIHKNDICSIHKLKINLYKPE 1259

Query: 1451 FVPL------ADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADED 1290
              P        D  +T+K VFLR+LEDAIE H+  L R+ GI+NF+  +     NE D D
Sbjct: 1260 HYPKNTDITEEDWEETMKVVFLRKLEDAIEIHMKMLHRMRGIRNFVQDTSPTAGNETDND 1319

Query: 1289 D--SGVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSE 1116
            +  SG +T++               DLGSD QKRK+QATDEM                SE
Sbjct: 1320 NSISGKQTED-----DDDGEGTEVDDLGSDAQKRKKQATDEMDYEEN-----------SE 1363

Query: 1115 DGEKGKSDGDHLEDTE-NGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMP 939
            D     S    +ED E + ++E+ E S+  +G     + + + K+  ++ +    +    
Sbjct: 1364 DETNEPSSISGVEDPEIDNENEDVEVSK--EGTPEQQKEVKKVKNVKQQSKKKRRKYVGA 1421

Query: 938  KEDSKKIRRGISMEVKGLSFEVDFRF-TTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMV 762
             ED     R I ++ +G  FEV F+F T+EPH+LLAQIAQKTA+KVYI+ SGKI +C + 
Sbjct: 1422 DED-----RHIFVKGEGEKFEVHFKFPTSEPHILLAQIAQKTAQKVYIQNSGKIERCTVA 1476

Query: 761  QYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNI 582
                 +     DD K+  R +    +  +  A+ ASGVDF + WE  D LD+  LYSN+I
Sbjct: 1477 NCGDPQVIYHGDDPKE--RREISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSI 1534

Query: 581  NAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISE 402
            + MLN +GVEAAR TIIRE+  VF  YG+ +  RHL+LIADYMT +GGYRPMSR G I+E
Sbjct: 1535 HDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAE 1594

Query: 401  SLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            S SPF +M+FETA+KFIV+AAT+G  D LETPS+RICLGLP   GTGCF+LMQ++++
Sbjct: 1595 STSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVEL 1651


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1639 bits (4243), Expect = 0.0
 Identities = 912/1743 (52%), Positives = 1171/1743 (67%), Gaps = 39/1743 (2%)
 Frame = -1

Query: 5342 MGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCK 5163
            MG ++VVE+VRF F+T+++VR+HS +K+T+P LLD + +P PGGLYDP +GP+++   C 
Sbjct: 21   MGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDKKACD 80

Query: 5162 SCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLE 4983
            +CGQ    C GHCGHI+LV P Y+PLLFN+L N L +TCF C  F +   +V+  VSQL+
Sbjct: 81   TCGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQLK 140

Query: 4982 LIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQA 4803
            LI+KG+ V AK+L        +       +  D+    G  T  S    D +   ED++ 
Sbjct: 141  LIIKGDIVSAKQL--------ESNTPTKSDSSDVSCESGVTTDSSEGCEDSD--MEDQR- 189

Query: 4802 FWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRS 4623
             W S Q AE  +V+  F++   + C  C+ +NP++ KP FGW  +  +  ++I +N IR 
Sbjct: 190  -WTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMKGSDIVANVIRG 248

Query: 4622 SRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKIL 4443
             +L          K +S V N  D+   DDSG    ++     D  K+  +K  + +K  
Sbjct: 249  LKLK---------KSTSSVENPDDF---DDSGI---DALSEVEDGDKETREKSTEVVK-- 291

Query: 4442 NQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGYSMFFL 4266
                E+ NN     LLP++VR+IL+ LWENE   CS+I D+ Q       +   YSMFFL
Sbjct: 292  --EFEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQS----GSEKIDYSMFFL 345

Query: 4265 ETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDLQ 4086
            E++LVPPIKFRP  KGGDSVMEHP T+ L K+L SNI LGNA  N  ++SKIISR M+LQ
Sbjct: 346  ESVLVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKIISRWMNLQ 405

Query: 4085 QSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSV 3906
            +S+NVLFDSKTAT Q+Q++G SGICQ LEKKEG+FRQKMMGKRVN ACRSVISPDPY++V
Sbjct: 406  ESVNVLFDSKTATVQSQREG-SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAV 464

Query: 3905 NEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMR 3726
            N+IGIPP FAL+LTYPERVTPWNV KLR A+INGP+IHPGAT Y D +STVKLP+++K R
Sbjct: 465  NDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKAR 524

Query: 3725 VAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3546
             AI+RKL SSRGA T+ G   ++ FEGK V+RH++DGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 525  RAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRV 584

Query: 3545 LKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 3366
            L+GEKTLR+HYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY  P+ GD +R
Sbjct: 585  LRGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLR 644

Query: 3365 GLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVE 3186
             LIQDHIVS+VLLT ++TFL +  F+QLL+ SGV      S  G   +KV +  S+  + 
Sbjct: 645  ALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELL 704

Query: 3185 SLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TGDS 3036
            ++ P I KP PLWTGKQVITA+LN IT+G  P TVE   K+P ++F          +GD 
Sbjct: 705  TVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDL 764

Query: 3035 YKNGEEDED--QNA-EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSA 2865
             K  + DE   QN  E  LL+ KNE V GVIDKAQF  +GLVHTV ELYGSN+AG LLS 
Sbjct: 765  TKKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSV 824

Query: 2864 LSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKL-EGEDVGEEV-HCEFVKFKPGQIGP 2691
             SRLFT+FLQIHGFTCGVDDLIIL   D +R  +L E E+VGE V    F      QI P
Sbjct: 825  FSRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDP 884

Query: 2690 EELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCIS 2511
            ++++  I++++  D ESA ASLD  + N L N+ + +G  ++  LL+ GLLK    NCIS
Sbjct: 885  QDMRSRIERILYEDGESALASLDRSIVNDL-NQCSSKG--VMNDLLSDGLLKTPGMNCIS 941

Query: 2510 VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRF 2331
            +MT +GAKGS VNFQQIS++LGQQ+LEGKRVPRMVSGKTLPCF PWD++ RAGGFI+DRF
Sbjct: 942  LMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRF 1001

Query: 2330 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 2151
            L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD TVRDADGSII
Sbjct: 1002 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSII 1061

Query: 2150 QFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ--RQFNSYIEKLPEGLEEEARRF 1977
            QF YGEDGVDVH++SF++ FK L  N++ + Q+         NSYI  LP  L+  A +F
Sbjct: 1062 QFQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISDLPISLKNGAEKF 1121

Query: 1976 IQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQ 1797
            ++ +                        N+ +++K       Q + ++LVK K+ +SLAQ
Sbjct: 1122 VEAMP----------------------MNERIASK----FVRQEELLKLVKSKFFASLAQ 1155

Query: 1796 SGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTC 1617
             GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTPI+TC
Sbjct: 1156 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTC 1215

Query: 1616 PFSQWRSKHEVVSLVSRVKKVTVADLVESMD---VQLSIHPRQVARTYKLIIKVKDTEFV 1446
            P  + ++K +   +  +++K+TVAD+++SMD   V  +++  +V   +KL I +   E  
Sbjct: 1216 PLLKGKTKEDANDITGKLRKITVADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHY 1275

Query: 1445 PL------ADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1284
            P        D  +T+  VFLR+LEDAIE H+  L R+ GI N       E  NE D DDS
Sbjct: 1276 PKHTDITEKDWEETMTVVFLRKLEDAIEIHMKMLHRIRGICN---DKGPEAGNETDNDDS 1332

Query: 1283 GVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEK 1104
             V  ++               DLGSD QK+K+Q TDEM                SED   
Sbjct: 1333 -VSGKQNKDDGDDDGEGTEVDDLGSDAQKQKKQVTDEMDYEEN-----------SEDETN 1380

Query: 1103 GKSDGDHLEDTE-NGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDS 927
              S    +ED E + ++E+AE S+++       E    +K    + +   + ++  KE S
Sbjct: 1381 EPSSISGVEDPEMDSENEDAEVSKED--TPEPQEEADVSKEETMEPQKEVKAVKNVKEQS 1438

Query: 926  KKIR---------RGISMEVKGLSFEVDFRFTT-EPHLLLAQIAQKTAKKVYIKRSGKIS 777
            KK R         R I +  +G  FEV F+F T +PH+LLAQIAQKTA+KVYI+ SGKI 
Sbjct: 1439 KKKRRKFVGATSDRHIFVRGEGEKFEVHFQFATDDPHILLAQIAQKTAQKVYIQDSGKIE 1498

Query: 776  QCKMVQY-DPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSR 600
            +C +    DP    VI+       R +    +  +  A+ ASGVDF + WE  D LD+  
Sbjct: 1499 RCTVANCGDPQ---VIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLDVRY 1555

Query: 599  LYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSR 420
            LYSN+I+ MLN +GVEAAR TIIRE+  VF  YG+ +  RHL+LIADYMT +GGYRPMSR
Sbjct: 1556 LYSNSIHDMLNVFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSR 1615

Query: 419  HGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQK 240
             G I+ES SPF +M+FETA+KFIV+AAT+G  D LETPS+RICLGLP   GTGCF+LMQ+
Sbjct: 1616 MGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQR 1675

Query: 239  LDV 231
            +++
Sbjct: 1676 VEL 1678


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 1617 bits (4186), Expect = 0.0
 Identities = 912/1776 (51%), Positives = 1165/1776 (65%), Gaps = 73/1776 (4%)
 Frame = -1

Query: 5339 GTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCKS 5160
            G ++VVE+VRF F+T+E+VR+HS++K+TNP LLD +E+P+PGGLYDP MGPLD+ + CKS
Sbjct: 9    GASQVVESVRFSFMTEEDVRKHSVMKVTNPVLLDNVERPVPGGLYDPLMGPLDDRTSCKS 68

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQ +  C GHCGHI+LV P Y+PLLFN+L N L +TCF C  F +++ +V+ CVSQL+L
Sbjct: 69   CGQLSLVCPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFFCHHFMANKNDVERCVSQLKL 128

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHY-EDK-- 4809
            I+KG  V AK+L                      D+R + +S+    S+ E    ED   
Sbjct: 129  IMKGNLVAAKQL----------------------DSRATDSSEECEDSEMEKERCEDSDM 166

Query: 4808 -QAFWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNS 4632
             +  W S Q AE   ++N FL+ K + C +C+   PK+ KP FGW  +  ++ + I +N 
Sbjct: 167  GKQRWTSLQFAEVTDLMNTFLRLKSKSCGSCKAKPPKLEKPMFGWVRIVGMSASAIGANV 226

Query: 4631 IRSSRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRI 4452
            IR  ++          K +S V N +D    DDSG    +     S+  K+ S + A+  
Sbjct: 227  IRGIKVK---------KSASSVENPND---SDDSGIDALSEVEDGSEKKKRKSSEVAEEF 274

Query: 4451 KILNQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGYSM 4275
                   + QNN     L PS+V+ IL+ LWENE   CS+I D+ Q +     +   YSM
Sbjct: 275  A------KHQNNT-RRDLFPSEVKKILKGLWENEHEFCSFIGDLWQSE----SENVDYSM 323

Query: 4274 FFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLM 4095
            FFLE ILVPP KFR P KGGDSVMEHP T+ L K+L+SNI+LGNA  N  ++ KIISR M
Sbjct: 324  FFLENILVPPTKFRAPTKGGDSVMEHPQTVGLNKVLESNISLGNACTNKLDQPKIISRWM 383

Query: 4094 DLQQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPY 3915
            +LQ+S+NVLFDSKTAT ++QK+GT GICQ LEKKEG+FRQKMMGKRVN ACRSVISPDP+
Sbjct: 384  NLQESVNVLFDSKTATVKSQKEGT-GICQTLEKKEGLFRQKMMGKRVNHACRSVISPDPF 442

Query: 3914 LSVNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASK 3735
            ++VN+IGIPP FAL+LTYPERVTPWNV KLR A+INGP+IHPGAT Y D VST+KLP ++
Sbjct: 443  IAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKVSTMKLPPTR 502

Query: 3734 KMRVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 3555
            K R+AI+RKL SSRG  T+ G   ++ FEGK+VYRH+QDGD+VLVNRQPTLHKPSIMAH+
Sbjct: 503  KARIAIARKLFSSRGVTTELGKTCDVNFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHM 562

Query: 3554 VRVLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGD 3375
            VRVLKGEKTLR+HYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY  P+ GD
Sbjct: 563  VRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYSRPSNGD 622

Query: 3374 TVRGLIQ--------------------------------DHIVSAVLLTMKNTFLTRSEF 3291
             +R LIQ                                DHIVS+VLLT ++TFL + EF
Sbjct: 623  PLRALIQVVHPSYFFKSLYSFHELGCLPVIFMDLACTQQDHIVSSVLLTKRDTFLDKDEF 682

Query: 3290 SQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLLPTIWKPEPLWTGKQVITALLNH 3111
            +QLL+ SGV      S  G   +KV    S   + ++ P I KP PLWTGKQVITA+LN 
Sbjct: 683  NQLLFSSGVTDMVLSSFSGRSGKKVIQSASNAELLTVTPAILKPVPLWTGKQVITAVLNE 742

Query: 3110 ITRGRAPCTVENQGKIPKNYFTGDSY----KNGEEDEDQNA---------------EHNL 2988
            IT+G  P +VE   K+P ++F   S     K+GE +E  +                E  L
Sbjct: 743  ITKGHPPFSVEKATKLPVDFFKCRSKEVKCKSGESNEKNHLTTKQDFDESWKKDLNEDKL 802

Query: 2987 LVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTCGVD 2808
            LV KNE VRGVIDKAQF  +GLVHTV ELYGSN+AG LLS  SRLFT+FLQ+ GFTCGVD
Sbjct: 803  LVRKNEFVRGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQLQGFTCGVD 862

Query: 2807 DLIILPHYDAQRKDKL-EGEDVGEEV-HCEFVKFKPGQIGPEELQLEIQKVICSDRESAT 2634
            DLIIL   D +R  +L E E VGE V    F      QI P++++  I++++  D ESA 
Sbjct: 863  DLIILKDMDGERTKQLQECEQVGERVLRKTFGIAVDVQIDPQDMKSRIERILYEDGESAL 922

Query: 2633 ASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISA 2454
            ASLD  + N+L N+ + +G  ++  LL+ GLLKP  KNCIS+MT +GAKGS VNFQQIS+
Sbjct: 923  ASLDRSVVNEL-NQCSSKG--VMNDLLSDGLLKPPGKNCISLMTISGAKGSKVNFQQISS 979

Query: 2453 YLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREG 2274
            +LGQQ+LEGKRVPRMVSGKTLPCF PWD++ RAGGFI+DRFL+GLRPQEYYFHCMAGREG
Sbjct: 980  HLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREG 1039

Query: 2273 LVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKN 2094
            LVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDADGSIIQF YGEDGVDVH++SF+  
Sbjct: 1040 LVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGK 1099

Query: 2093 FKALEDNRETICQKFQNQ--RQFNSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQ 1920
            F+ L  N++ I Q+         +SYI  LP  L+  A +F++ +               
Sbjct: 1100 FRELTVNQDMILQRCSEDMLSGSSSYITDLPITLKNGAEKFVEAMP-------------- 1145

Query: 1919 LHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQ 1740
                     N+ +++K       Q   ++LVK K+ +SLAQ GEPVGV+AAQSVGEPSTQ
Sbjct: 1146 --------MNERIASK----LVRQEDLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQ 1193

Query: 1739 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVK 1560
            MTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTPI+TCP  + ++  +   +  +++
Sbjct: 1194 MTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTTDDAKKITDKLR 1253

Query: 1559 KVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFVPL------ADIHDTLKSVF 1407
            K+ VAD+++SM+V +   ++H  +V   +KL IK+   E  P        D  +T+  +F
Sbjct: 1254 KIAVADIIKSMEVSVIPYAVHEGEVCSIHKLKIKLYKPEHYPKHTDITDEDWKETMTVMF 1313

Query: 1406 LRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQEAXXXXXXXXXXXX 1227
            LR+LEDAIE HV  L R+ GIK+   +  +   NE D DDS                   
Sbjct: 1314 LRKLEDAIEIHVKMLVRIRGIKSEKDTRPTS-GNETDNDDSVSGKHTEDDDDDDEGEGTE 1372

Query: 1226 XXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELS--EDGEKGKSDGDHLEDTENGKDE 1053
              DLG+D QK+K+QA D +               +S  ED E    D    E+ E  ++E
Sbjct: 1373 VDDLGADAQKQKKQAVDVVDYEENSEDEKDEPSSISGVEDPETDNED----ENAEVSREE 1428

Query: 1052 EAEHSEDNDGASNAD-EVMSEAKSSGRKGRATSERIEMPKEDSKKIRRGISMEVKGLSFE 876
              E  ED D +     E   E K+     R    +    K D     R I  + KG +FE
Sbjct: 1429 TPEPQEDADVSKEETLEPQKEVKNVEEGSRKKRRKFVPGKND-----RHIFAKFKGKTFE 1483

Query: 875  VDFRF-TTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGD 699
            V F+F + EPH+LL+QIAQKTA+KVYI+ SGKI +  +     D + + + D  K  R +
Sbjct: 1484 VHFKFLSEEPHILLSQIAQKTAQKVYIQNSGKIERSTVANCG-DPQVIYYGDNPK-EREE 1541

Query: 698  AEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVK 519
                +  +  A+ ASGVDF + WE  D LD+  LYSN+I+ MLNT+GVEAAR TIIRE+ 
Sbjct: 1542 ISNDEKKASPALHASGVDFLALWEYQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREIN 1601

Query: 518  QVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAA 339
             VF  YG+ +  RHL+LIADYMT +GGYRPMSR G I+ES SPF +M+FETA+KFIV+AA
Sbjct: 1602 HVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAA 1661

Query: 338  THGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            T+G  D LETPS+RICLGLP   GTGCF+L+Q++++
Sbjct: 1662 TYGEVDRLETPSARICLGLPALSGTGCFDLLQRMEL 1697


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1616 bits (4185), Expect = 0.0
 Identities = 897/1734 (51%), Positives = 1158/1734 (66%), Gaps = 30/1734 (1%)
 Frame = -1

Query: 5342 MGTTEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSPCK 5163
            MG ++VVE+VRF F+T+++VR+HS +K+T+P L D +  P PGGLYD  +GP D+   C 
Sbjct: 21   MGASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACN 80

Query: 5162 SCGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLE 4983
            SCGQ    C GHCGHI+LV P Y+PLLFN+L N L + CF C  F +   +V+  VSQL+
Sbjct: 81   SCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLK 140

Query: 4982 LIVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQA 4803
            LI+KG+ V AK+L        K   E    +V  + +     SD           ED++ 
Sbjct: 141  LIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSD----------VEDQR- 189

Query: 4802 FWDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRS 4623
             W S Q AE  +VL  F++   + C  C+ INPK+ KP FGW  +  + ++++ +N IR 
Sbjct: 190  -WTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRG 248

Query: 4622 SRLDVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKIL 4443
             +L          K +S V N   +   DDSG    +        T++ S + A      
Sbjct: 249  LKLK---------KSTSSVENPDGF---DDSGIDALSEVEDGDKETREKSTEVAAEF--- 293

Query: 4442 NQGLEDQNNYFSGPLLPSQVRDILRRLWENE-PLCSYIYDIQQQQCKLSGKATGYSMFFL 4266
                E+ N+     LLPS+VR+IL+ LW+NE   CS+I D+ Q       +   YSMFFL
Sbjct: 294  ----EEHNS--KRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQS----GSEKIDYSMFFL 343

Query: 4265 ETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDLQ 4086
            E++LVPP KFRPP  GGDSVMEHP T+ L K+++SN  LGNA  N  ++SK+I R  +LQ
Sbjct: 344  ESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQ 403

Query: 4085 QSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSV 3906
            +S+NVLFDSKTAT Q+Q+D +SGICQ LEKKEG+FRQKMMGKRVN ACRSVISPDPY++V
Sbjct: 404  ESVNVLFDSKTATVQSQRD-SSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAV 462

Query: 3905 NEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMR 3726
            N+IGIPP FAL+LTYPERVTPWNV KLR A+INGP+IHPGAT Y D  ST+KLP+++K R
Sbjct: 463  NDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKAR 522

Query: 3725 VAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3546
             AI+RKL SSRGA T+ G   ++ FEGK V+RH++DGDIVLVNRQPTLHKPS+MAH VRV
Sbjct: 523  RAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRV 582

Query: 3545 LKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 3366
            LKGEKTLR+HYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY  P+ G+ +R
Sbjct: 583  LKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLR 642

Query: 3365 GLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVE 3186
             LIQDHIVS+VLLT ++TFL +  F+QLL+ SGV      +  G   +KV +  S+  + 
Sbjct: 643  ALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELL 702

Query: 3185 SLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TGDS 3036
            ++ P I KP PLWTGKQVITA+LN IT+G  P TVE   K+P ++F          +GD 
Sbjct: 703  TVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDL 762

Query: 3035 YKNGEEDED--QNA-EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSA 2865
             K  E DE   QN  E  L + KNE V GVIDKAQF  +GLVHTV ELYGSN+AG LLS 
Sbjct: 763  TKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSV 822

Query: 2864 LSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKL-EGEDVGEEV-HCEFVKFKPGQIGP 2691
             SRLFT+FLQ HGFTCGVDDLIIL   D +R  +L E E+VGE V    F      QI P
Sbjct: 823  FSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDP 882

Query: 2690 EELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCIS 2511
            ++++  I++++  D ESA ASLD  + N L N+ + +G  ++  LL+ GLLK   +NCIS
Sbjct: 883  QDMRSRIERILYEDGESALASLDRSIVNYL-NQCSSKG--VMNDLLSDGLLKTPGRNCIS 939

Query: 2510 VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRF 2331
            +MT +GAKGS VNFQQIS++LGQQ+LEGKRVPRMVSGKTLPCF PWD++ RAGGFI+DRF
Sbjct: 940  LMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRF 999

Query: 2330 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 2151
            L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDADGSII
Sbjct: 1000 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSII 1059

Query: 2150 QFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ--RQFNSYIEKLPEGLEEEARRF 1977
            QF YGEDGVDVH++SF++ FK L  N++ + QK         +SYI  LP  L++ A +F
Sbjct: 1060 QFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKF 1119

Query: 1976 IQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQ 1797
            ++ +                        N+ +++K       Q + ++LVK K+ +SLAQ
Sbjct: 1120 VEAMP----------------------MNERIASK----FVRQEELLKLVKSKFFASLAQ 1153

Query: 1796 SGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTC 1617
             GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTPI+TC
Sbjct: 1154 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTC 1213

Query: 1616 PFSQWRSKHEVVSLVSRVKKVTVADLVESMD---VQLSIHPRQVARTYKLIIKVKDTEFV 1446
            P  + ++K +   +  R++K+TVAD+++SM+   V  +++  +V   +KL I +   E  
Sbjct: 1214 PLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHY 1273

Query: 1445 PL------ADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1284
            P        D  +T+++VFLR+LEDAIE H+  L R+ GI N ++  I+   NE D DDS
Sbjct: 1274 PKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIA--GNETDNDDS 1331

Query: 1283 GVRTQEAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEK 1104
             V  ++               DLGSD QK+K+Q TDEM                SED   
Sbjct: 1332 -VSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEEN-----------SEDETN 1379

Query: 1103 GKSDGDHLEDTE-NGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDS 927
              S    +ED E + ++E+ E S+++      + +  + +  G K      + +  K   
Sbjct: 1380 EPSSISGVEDPEMDSENEDTEVSKEDTPEPQEESMEPQKEVKGVKNVKEQSKKKRRKFVR 1439

Query: 926  KKIRRGISMEVKGLSFEVDFRFTT-EPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQY-D 753
             K  R I ++ +G  FEV F+F T +PH+LLAQIAQ+TA+KVYI+ SGKI +C +    D
Sbjct: 1440 AKSDRHIFVKGEGEKFEVHFKFATDDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGD 1499

Query: 752  PDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAM 573
            P    VI+       R +    +  +  A+ ASGVDF + WE  D LD+  LYSN+I+ M
Sbjct: 1500 PQ---VIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDM 1556

Query: 572  LNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLS 393
            LN +GVEAAR TIIRE+  VF  YG+ +  RHL+LIADYMT +GGYRPMSR G I+ES S
Sbjct: 1557 LNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTS 1616

Query: 392  PFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
            PF +M+FETA+KFIV+AAT+G  D LETPS+RICLGLP   GTGCF+LMQ++++
Sbjct: 1617 PFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVEL 1670


>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
            vesca subsp. vesca]
          Length = 1673

 Score = 1583 bits (4100), Expect = 0.0
 Identities = 881/1755 (50%), Positives = 1141/1755 (65%), Gaps = 54/1755 (3%)
 Frame = -1

Query: 5333 TEVVEAVRFGFLTDEEVRRHSLVKITNPNLLDILEKPIPGGLYDPAMGPLDESSP--CKS 5160
            TE + AV F F TDEE  + S++KIT P+L+D L  P+ GGLYDPAMGPLD+ S   C++
Sbjct: 18   TESIRAVSFSFFTDEEASKQSVIKITKPDLVDELGTPVQGGLYDPAMGPLDDRSHTCCRT 77

Query: 5159 CGQRAYHCTGHCGHIDLVSPAYNPLLFNMLNNILNKTCFQCLQFRSSRREVDNCVSQLEL 4980
            CGQ AY+C GH GHID+V P YNPLLFN L  +L +TCF C  FR+SR +V  CVSQLEL
Sbjct: 78   CGQNAYNCQGHFGHIDIVLPVYNPLLFNHLYKLLQRTCFNCCCFRTSREQVQKCVSQLEL 137

Query: 4979 IVKGETVEAKKLGLRQSLLDKKKMEWALEIVDLEDNRGSHTSDSTVFSDGENHYEDKQAF 4800
            +++G+ V AK+L                       N  S+  +    +D E     K   
Sbjct: 138  VMRGDVVAAKRLDSDSP------------------NHHSYLEEGGEGNDTERDRHSKPER 179

Query: 4799 WDSSQLAEAMSVLNEFLKRKGRKCRNCEFINPKINKPTFGWFHVNRLANTEIRSNSIRSS 4620
            W S Q  EAMS+LN  L+ + + C+NC   NPKI KPTFGWF  +   N   R N IR  
Sbjct: 180  WTSLQFTEAMSILNCSLETQ-QTCKNCGHKNPKITKPTFGWFERSGAENA--RKNVIRRC 236

Query: 4619 RL--DVTHSGGGEDKPSSEVVNASDYSWKDDSGTAEANSFLTASDSTKKPSKKDAKRIKI 4446
            +L   +T    GE          SD S         A+SF+T   +TKK  ++++    +
Sbjct: 237  KLVGPLTVQEEGESCGDDVDAGISDISC--------ASSFVTQVTATKKSEEQESI---V 285

Query: 4445 LNQGLEDQNNYFSGPLLPSQVRDILRRLWENEP-LCSYIYDIQQQQCKLSGKATGYSMFF 4269
            L+Q  + Q    SG L P +V++++  LW  E  LCSY+ DIQ    +   +  G+SMFF
Sbjct: 286  LDQYFK-QKEALSGDLTPKKVKELMSLLWTKEAQLCSYLSDIQHNGVE---RKEGHSMFF 341

Query: 4268 LETILVPPIKFRPPAKGGDSVMEHPHTLLLGKLLQSNIALGNAHVNNAERSKIISRLMDL 4089
            LE++LVPPIKFRPPA+ GDSVMEH  T+ LG+++++N  L +A   N + S+II     L
Sbjct: 342  LESVLVPPIKFRPPARSGDSVMEHAQTVSLGEVVRANSYLKDALDKN-KVSQIIQCWKRL 400

Query: 4088 QQSINVLFDSKTATSQAQKDGTSGICQYLEKKEGIFRQKMMGKRVNFACRSVISPDPYLS 3909
            Q  IN++FD           G  GI Q LEKK G+FRQK+MGKRVNFACRSVISPDPYL+
Sbjct: 401  QDCINLMFD-----------GQGGIRQMLEKKAGMFRQKLMGKRVNFACRSVISPDPYLA 449

Query: 3908 VNEIGIPPYFALRLTYPERVTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKM 3729
            VNEIGIPP FAL LTYPERVTPWNV KLR A++NG EIHPGAT Y+D  S +KLP   + 
Sbjct: 450  VNEIGIPPIFALTLTYPERVTPWNVFKLRNAIVNGSEIHPGATHYIDKTS-IKLPQKWRE 508

Query: 3728 RVAISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 3549
            RV +SRKLPSS+GA TQ G   +  +E KIV RHLQDGDIVLVNRQPTLHKPSIMAH+VR
Sbjct: 509  RVLLSRKLPSSKGAGTQHGKGSD--YENKIVLRHLQDGDIVLVNRQPTLHKPSIMAHIVR 566

Query: 3548 VLKGEKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTV 3369
            VLKGEKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYN+VNAN QY+ PT G  +
Sbjct: 567  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNLVNANNQYVKPTSGFPI 626

Query: 3368 RGLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLV 3189
            R LIQDHI+S++ L+  +TF    E +QLLY S V A G  +  G   +KV + +SE  +
Sbjct: 627  RALIQDHIISSLFLSKTDTFFDLDEINQLLYSSSVSACGSETFSGKPGQKVLMSNSEDAM 686

Query: 3188 ESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFT------------ 3045
            +  LP IWKP   W GKQ+IT LLN IT G  P T E + K+P  +F             
Sbjct: 687  QLPLPAIWKPVRKWPGKQIITTLLNRITSGSPPLTFEKEAKLPSGFFNCKTPVEEERSAK 746

Query: 3044 -----------GDSYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELY 2898
                        ++ K+   + ++  E  LL++KN LVRGVIDK QFG +GLVH V ELY
Sbjct: 747  GHRAKEKQSRIKEAGKDDSREIEEPDESKLLIYKNNLVRGVIDKNQFGDYGLVHNVHELY 806

Query: 2897 GSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEF 2721
            GS +AG LLSA SRL+T++LQ+HGFTCGVDDL++L   D + K++LE  E++GE+V  EF
Sbjct: 807  GSEAAGKLLSAFSRLYTVYLQMHGFTCGVDDLLLLQSKDKKMKEQLESCEELGEKVIREF 866

Query: 2720 VKFKPGQI-GPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAG 2544
            +  +  +  G   LQ +I++ + ++ ES +  LD KM ++L  K++   S + K L   G
Sbjct: 867  IGVRQNERKGALILQSDIEEFLRNNGESVSEMLDRKMTSELNKKISN--SDVFKQLFQKG 924

Query: 2543 LLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFT 2364
            L KP  KNC+ +MT++GAKG   N QQI+AYLGQQELEGKRVP+MVSGKTLPCFPPWD++
Sbjct: 925  LSKPSFKNCMYLMTSSGAKGGVANLQQIAAYLGQQELEGKRVPQMVSGKTLPCFPPWDWS 984

Query: 2363 SRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYD 2184
             RAGGFI DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKV YD
Sbjct: 985  PRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVSYD 1044

Query: 2183 YTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLP 2007
            YTVRDADGSIIQF YGEDG+DVH TSF++ F+ L +N+E   ++F  +  +FN YI++LP
Sbjct: 1045 YTVRDADGSIIQFRYGEDGIDVHLTSFIQKFEKLANNKEMFDKRFGREIDKFNPYIDELP 1104

Query: 2006 EGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELV 1827
              L+ +A                                  LS KEK      N  ++L+
Sbjct: 1105 PALKRKAEM----------------------------SGPDLSLKEK------NANLKLM 1130

Query: 1826 KQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1647
            + K+LSSLAQ GEPVG++AAQSVGEPSTQMTLNTFH AGR EMNVTLGIPRLQEILMTAS
Sbjct: 1131 EHKFLSSLAQPGEPVGILAAQSVGEPSTQMTLNTFHNAGRSEMNVTLGIPRLQEILMTAS 1190

Query: 1646 DVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQLSIHPRQVARTYKLIIK 1467
            + IKTP++TCP    +++ +  SL  R+K++TVAD++ESM V +     Q  +T + + +
Sbjct: 1191 NDIKTPVMTCPLRMGKAE-DAKSLAGRLKRITVADIIESMKVNIKPFTHQDHQTCR-VYE 1248

Query: 1466 VKDTEFVP------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSN 1305
            ++ T F+P        D  + LK  F+R LEDAI+NH++ LS++SGIK+  + S+ + SN
Sbjct: 1249 LEMTFFIPEHLSKFSEDWEELLKVKFVRALEDAIQNHLVLLSKISGIKDIKADSLPKASN 1308

Query: 1304 EADEDDSGVRTQ---EAXXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXX 1134
            E DED S   +Q   E               D G D QK+K+Q TDEM            
Sbjct: 1309 ETDEDISFNISQHEGEGGDDDNVDDSGEGVEDFGLDAQKQKRQGTDEMEYDDDW------ 1362

Query: 1133 XXELSEDGEKGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSG------RK 972
                 ++  +G+   +   + +NG+ +     +   G S+A++ M E+ S+G       K
Sbjct: 1363 ----EDEFNEGRQSDEFENEIDNGELDVEIDKDGVTGISDANDKMQESCSTGGISKPHSK 1418

Query: 971  GRATSERIEMPKEDSKKI-----RRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKK 807
            G+ T  R ++ K+ S K+      R   +  KG  FE+ F+FT EPH+LL QIAQKTA+ 
Sbjct: 1419 GKKTKSRDKIKKKTSAKLVRKEYDRATFVSAKGFHFEIHFKFTNEPHILLDQIAQKTARN 1478

Query: 806  VYIKRSGKISQCKMVQYDPDEKTVI--WDDKKKPNRGDAE-KQDDTSYWAVKASGVDFKS 636
            VY+K SG I  C+ +    +E  V   W+D +    G+    +++    A++ +GVDF +
Sbjct: 1479 VYVKSSGNILDCQDIDIYGNEDQVFCCWNDPRNKLSGEKNPSEEEKKMRALQTAGVDFAT 1538

Query: 635  FWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADY 456
             W++ DDLD++ +YSNNI+AMLNTYGVEAAR TII+E+  VF +YG+ ++ RHL LIADY
Sbjct: 1539 LWKLQDDLDVNYIYSNNIHAMLNTYGVEAARETIIKEISNVFKVYGISVNIRHLLLIADY 1598

Query: 455  MTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPV 276
            MT +G YRPM+R G I+ES SP  KMSFETASKFI EAA HG  D+LETPS+RICLGLPV
Sbjct: 1599 MTRSGSYRPMNRFGGIAESTSPMNKMSFETASKFIQEAAYHGEKDDLETPSARICLGLPV 1658

Query: 275  KMGTGCFELMQKLDV 231
            K+GTGCF+LM K+++
Sbjct: 1659 KVGTGCFDLMHKMEI 1673