BLASTX nr result

ID: Rehmannia23_contig00012648 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00012648
         (523 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006368028.1| PREDICTED: repetitive proline-rich cell wall...    57   2e-06
ref|XP_002883018.1| predicted protein [Arabidopsis lyrata subsp....    55   7e-06
ref|NP_188289.1| pollen Ole e 1 allergen and extensin family pro...    55   1e-05

>ref|XP_006368028.1| PREDICTED: repetitive proline-rich cell wall protein 2-like
           [Solanum tuberosum]
          Length = 415

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
 Frame = -1

Query: 379 LSVTGQLCCTSTGNCPGQPLAGTIVTLTCRNILGISTQIGQNTTDVNGFFSITVPRPQGV 200
           +++ G + C+++GN PG  + G  V + C N     T + Q  T+V G  ++T+     +
Sbjct: 298 ITIRGVVSCSTSGNAPGPGIGGVNVAIICGN-----TTLAQVITNVEGLINVTLSTNTNI 352

Query: 199 ILGLT-RVPCVATVQLPL-NATVCPALSTTTGILTSAVRGVGTAISSTLGRIQIAITTGF 26
           + G T  + CVA   LP+ N TV P    T+GIL + +  VG  +    G +  A+   F
Sbjct: 353 LFGNTSTLSCVARAALPIVNCTVLP----TSGILQAPLMLVGNIVQGVSGVVLSALVGTF 408

Query: 25  SV 20
           ++
Sbjct: 409 NL 410


>ref|XP_002883018.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328858|gb|EFH59277.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 155

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
 Frame = -1

Query: 466 NSIITFFLIAVVFATATPLAHA--GLLGINGLSVTGQLCCTSTGNCPGQPLAGTIVTLTC 293
           N  ITF L       A+P+A+A  GL GIN   + G L CT      G PL GT  T   
Sbjct: 6   NKHITFSLFLFCLIVASPMANAQIGLGGINVPIINGVLFCTIN----GAPLNGTSATAFA 61

Query: 292 RNIL-----GISTQIGQNTTDVNGFFSITVPRPQGVILGLTRVPCVATVQLPLNATVCPA 128
             ++      ++T + +  T + G F+ +     G+ + L  +     + +P   + C +
Sbjct: 62  NAVVQLQCGSLNTVVAETITSITGLFTFST---TGIQISLPTLLNDCRIVVPTPRSSCSS 118

Query: 127 LSTTTGILTSAVRGVGTAISSTLGRIQIAITTGF 26
              +TG L S +R VG+ IS  L  + I + TGF
Sbjct: 119 TLPSTGQLVSQLRIVGSLISGLLNIVAI-LPTGF 151


>ref|NP_188289.1| pollen Ole e 1 allergen and extensin family protein [Arabidopsis
           thaliana] gi|11994622|dbj|BAB02759.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|20856564|gb|AAM26673.1| AT3g16670/MGL6_12
           [Arabidopsis thaliana] gi|23505767|gb|AAN28743.1|
           At3g16670/MGL6_12 [Arabidopsis thaliana]
           gi|332642329|gb|AEE75850.1| pollen Ole e 1 allergen and
           extensin family protein [Arabidopsis thaliana]
          Length = 154

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
 Frame = -1

Query: 457 ITFFLIAVVFATATPLAHA--GLLGINGLSVTGQLCCTSTG----NCPGQPLAGTIVTLT 296
           ITF L+ +     +P+A+A  GL GIN   + G L CT  G      P    A  +V L 
Sbjct: 8   ITFSLVLLCLIVVSPMANAQSGLGGINVPIINGVLFCTINGAPLNGTPAPAFANAVVQLQ 67

Query: 295 CRNILGISTQIGQNTTDVNGFFSITVPRPQGVILGLTRVPCVATVQLPLNATVCPALSTT 116
           C N   ++  + +  T++ G F+ +     G+ + L  +     + +P   + C A   +
Sbjct: 68  CGN---LNRVVAETITNIAGLFTFST---NGIQISLPTLLNDCRIVVPTPRSSCDATLPS 121

Query: 115 TGILTSAVRGVGTAISSTLGRIQIAITTGF 26
           TG L S +  VG+ +S  L  + I + TGF
Sbjct: 122 TGQLISQLNLVGSIVSGLLNIVAI-LPTGF 150


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