BLASTX nr result
ID: Rehmannia23_contig00012496
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00012496
(4386 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 705 0.0
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 656 0.0
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 593 e-166
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 565 e-158
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 555 e-155
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 519 e-144
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 518 e-144
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 503 e-139
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 503 e-139
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 497 e-137
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 492 e-136
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 491 e-135
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 483 e-133
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 483 e-133
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 468 e-128
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 452 e-124
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 449 e-123
gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao] 442 e-121
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 439 e-120
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 435 e-119
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 705 bits (1820), Expect = 0.0
Identities = 386/1117 (34%), Positives = 598/1117 (53%), Gaps = 14/1117 (1%)
Frame = +3
Query: 795 MKIAVWNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKFPG 974
MKI WNVRG +PIK ++ F+ +++ L ET++ ++ KF
Sbjct: 1 MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGK-------IQKKFGN 53
Query: 975 -WLYSNNFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYS 1151
W + NN+ GR+ + W + V++++L ++ Q+I ++ + F + VYGL++
Sbjct: 54 RWSWINNYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHT 113
Query: 1152 VGDRRLLWDDLYNIGHSLIDPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICLTLGL 1331
+ DR++LW++LYN +P +++GD+N + S ++LNG ++ + D + L L
Sbjct: 114 IADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQL 173
Query: 1332 NDVQTTGCFFTWTNNSAWC-----RLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXX 1496
+ TTG F++W N S R+D++ VN AW + G ISDH
Sbjct: 174 LEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAG-ISDHSPLIF 232
Query: 1497 XXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFNPVWGTAQFMXXXXXXXXXXXXXXXX 1676
+PFKF N F+ VV+ AW +
Sbjct: 233 NLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFH 292
Query: 1677 SQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKA 1856
S+ FS +V+E + L ++Q + + S L E K ++ + ++ L QK+
Sbjct: 293 SKKFSKAHCQVEELRRKLAAVQALPEVSQV-SELQEEEKDLIAQLRKWSTIDESILKQKS 351
Query: 1857 KCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTY 2036
+ +L+L D N+KFF + IK + ++ + G Q T E+ + NFY+ L GT
Sbjct: 352 RIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTS 411
Query: 2037 YST-NPIDQSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKK 2213
S ID V+ G L+ L P+ +I A+ +IDD ++PG DG++S FFKK
Sbjct: 412 SSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKK 471
Query: 2214 SWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAIT 2393
SW ++ ++ I +FF N + K IN T++TLIPK D + D+RPIACC+ +YK I+
Sbjct: 472 SWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIIS 531
Query: 2394 KIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKA 2573
KI+ RL+ V+ +++ AQ F+ R+I DNI LA E+IR Y R+ +SPRC IKVDI+KA
Sbjct: 532 KILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKA 591
Query: 2574 YDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMS 2753
YD+V W FL +L +GFP++FI W+M CV + S+S+ +NG F ++GLRQGDP+S
Sbjct: 592 YDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLS 651
Query: 2754 PGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMD 2933
P LF L MEYLSR + F FHP+C +K++HL+FADDL++FA+ D S+ +M
Sbjct: 652 PFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMA 711
Query: 2934 CLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNS 3113
+ F K SGL + KS ++ GV + + L + + P GSLP RYLGVPLA++KLN
Sbjct: 712 AFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNF 771
Query: 3114 VHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLC 3293
PL D+I W A+ L+YAGRL L+K++L ++ +W QIFPLPK ++K + C
Sbjct: 772 SQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTC 831
Query: 3294 RTFLW-----GKKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWV 3458
R FLW + P++W + P GGL + N+ WNKA + K LW K D LWV
Sbjct: 832 RKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWV 891
Query: 3459 KWVHAFYLKRQSIWDWNPKKDDSTLLKRINDVKNELLCKFGNQNAVIANLLAFSNHKGLI 3638
+WV+A+Y+KRQ+I + + S +L++I + ELL + G AV SNH
Sbjct: 892 RWVNAYYIKRQNIENVTVSSNTSWILRKIFE-SRELLTRTGGWEAV-------SNHMNFS 943
Query: 3639 SSKIYDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLT--YTDINPMCK 3812
K Y + ++ E WK + + PK F W+A +RLAT ++ D++P+CK
Sbjct: 944 IKKTYKLLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCK 1003
Query: 3813 LCSQQLESAPHLFFTCPITNLLWNRIKAWLKIHRSMSTLASAIKWIRKDKADPILKKARA 3992
+C ++E+ HLFF C + +W ++ +L + A I+K ++ K
Sbjct: 1004 MCGNEIETIQHLFFNCIYSKEIWGKVLLYLNLQPQADAQAKKELAIKKARSTKDRNKLYV 1063
Query: 3993 VAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHV 4103
+ F S+Y IW RNA VF G + K I F +
Sbjct: 1064 MMFTESVYAIWLLRNAKVFRGIEINQNQAVKSIIFRI 1100
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 656 bits (1692), Expect = 0.0
Identities = 376/1119 (33%), Positives = 583/1119 (52%), Gaps = 21/1119 (1%)
Frame = +3
Query: 810 WNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKF-PGWLYS 986
WNVRG +P K ++ F+ H + + LLET++ + V+ K W +
Sbjct: 6 WNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASK-------VQGKLGKDWKWL 58
Query: 987 NNFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRR 1166
NN+ R+ + W P+ V+V + QL+ C I + SH + + VYGL+++ DR+
Sbjct: 59 NNYSHSARERIWIGWRPAWVNVTLTHTQEQLMVCDIQ-DQSHKLKMVA-VYGLHTIADRK 116
Query: 1167 LLWDDLYNIGHSLIDPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICLTLGLNDVQT 1346
LW L DP +I+GDFN + +++L G + + + +DFQ L L + ++
Sbjct: 117 SLWSGLLQCVQQQ-DPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRS 175
Query: 1347 TGCFFTWTNNS-----AWCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXXXXXXX 1511
T +++W+N+S R+D+A VN W + ++S PG ISDH
Sbjct: 176 TWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPG-ISDHSPLLFNLMTG 234
Query: 1512 XXXXXKPFKFFNMWTSHPSFLNVVQNAWFNPVWGTAQFMXXXXXXXXXXXXXXXX-SQHF 1688
KPFKF N+ FL V+ AW N V G + +Q
Sbjct: 235 RPQGGKPFKFMNVMAEQGEFLETVEKAW-NSVNGRFKLQAIWLNLKAVKRELKQMKTQKI 293
Query: 1689 SHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSF 1868
+VK + L LQ+Q D N + + KS + + E L QK++ ++
Sbjct: 294 GLAHEKVKNLRHQLQDLQSQDDFDH-NDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITW 352
Query: 1869 LNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYST- 2045
L D N+K F + +K ++ ++ DG E+ + + FYK L GT ST
Sbjct: 353 LQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTL 412
Query: 2046 NPIDQSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDI 2225
+D + + G CL+ + L V ++I A+ I +D++PG DG+++ FFKKSW
Sbjct: 413 MGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGS 472
Query: 2226 VGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIA 2405
+ ++ IQEFF+N+++ + IN +TL+PK H+ V +FRPIACC V+YK I+K++
Sbjct: 473 IKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLT 532
Query: 2406 ARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYDTV 2585
R++ ++ ++N AQ+ F+ GR+I DNI LA E+IR Y RK +SPRC +KVDI+KAYD+V
Sbjct: 533 NRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSV 592
Query: 2586 SWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLF 2765
WSFL +L GFP+ F+ W+MECV++ S+S+ +NG F +GLRQGDPMSP LF
Sbjct: 593 EWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLF 652
Query: 2766 ILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSE 2945
LCMEYLSR + +F FHP+C L I+HL+FADDL++F + D S+ + +
Sbjct: 653 ALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQK 712
Query: 2946 FKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNSVHYA 3125
F SGL + KSN++ GV L + ++ G LP RYLGVPL ++KL
Sbjct: 713 FSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCK 772
Query: 3126 PLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTFL 3305
PL + I W A L+YAGRL LIKS+L ++ +W IFPL K V++ + +CR FL
Sbjct: 773 PLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFL 832
Query: 3306 W-GK----KRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVH 3470
W GK K+ P++W I P GG + N+ WN+A + K LW K D LWV+W+H
Sbjct: 833 WTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIH 892
Query: 3471 AFYLKRQSIWDWNPKKDDSTLLKRINDVKNELLCKFGNQNAVIANLLAFSNHKGLISSKI 3650
++Y+KRQ I N + +L++I ++ L G+ + + K
Sbjct: 893 SYYIKRQDILTVNISNQTTWILRKIVKARDH-LSNIGDWDEICIG-------DKFSMKKA 944
Query: 3651 YDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLT----YTDINPMCKLC 3818
Y ++GE+ W+ + ++ PK F WM ++RL T++ ++ D+N +LC
Sbjct: 945 YKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDLN--YRLC 1002
Query: 3819 SQQLESAPHLFFTCPITNLLWNRIKAWLKIHRS----MSTLASAIKWIRKDKADPILKKA 3986
E+ HLFF+C + +W++I ++ S ++S RK K K
Sbjct: 1003 RNDGETIQHLFFSCSYSAGVWSKICYIMRFPNSGVSHQEIISSVCGQARKKKG-----KL 1057
Query: 3987 RAVAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHV 4103
+ + +Y IWK RN F G+ V +KI F V
Sbjct: 1058 IVMLYTEFVYAIWKQRNKRTFTGENKDENEVLRKILFAV 1096
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 593 bits (1530), Expect = e-166
Identities = 335/930 (36%), Positives = 502/930 (53%), Gaps = 18/930 (1%)
Frame = +3
Query: 810 WNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKFPGWLYSN 989
WNVRGF N ++ + K +LET++++ S L + FPGW
Sbjct: 7 WNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLL------SSFPGWKSVC 60
Query: 990 NFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRRL 1169
N+ GR+ ++W+P+ V V +L S Q I C + F+ +FVY + RR
Sbjct: 61 NYEFAALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRR 119
Query: 1170 LWDDLYNIGHSLID---PWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICLTLGLNDV 1340
LW +L + + PW+ILGDFN P + G + +++F++ LT ++D+
Sbjct: 120 LWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDL 179
Query: 1341 QTTGCFFTWTNNSA----WCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXXXXXX 1508
G +TW NN ++DR LVN +W + +S + SDH
Sbjct: 180 PFRGNHYTWWNNQENNPIAKKIDRILVNDSWL-IASPLSYGSFCAMEFSDHCPSCVNISN 238
Query: 1509 XXXXXXKPFKFFNMWTSHPSFLNVVQNAWFNPVW-GTAQFMXXXXXXXXXXXXXXXXSQH 1685
KPFK N HP F+ ++ W + G+A F +H
Sbjct: 239 QSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREH 298
Query: 1686 FSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCS 1865
+S + RV +A L + QN L P + E ++ + L AE+ FL QK++
Sbjct: 299 YSGLEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHR-SWAELALAEERFLCQKSRVL 357
Query: 1866 FLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYST 2045
+L D NT FFH ++ ++ + G + + EL V+F+K LFG+ S+
Sbjct: 358 WLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGS--SS 415
Query: 2046 NPIDQSVINHGPCLT-----EEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFK 2210
+ I I+ LT E LL A V +DIK+ F + ++SPGPDGY+S FFK
Sbjct: 416 HLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFK 475
Query: 2211 KSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAI 2390
K+W IVG +I A+QEFF + +LL Q N T++T++PK ++ + +FRPI+CCN +YK I
Sbjct: 476 KTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVI 535
Query: 2391 TKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKK 2570
+K++A RLE +LP I+P+Q+AFV GR +T+N+ LA E+++ + + IS R +KVD++K
Sbjct: 536 SKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRK 595
Query: 2571 AYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPM 2750
A+D+V W F+ L P F++W+ +C+TS SFS+ ++GSL G F G +GLRQGDP+
Sbjct: 596 AFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPL 655
Query: 2751 SPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILM 2930
SP LF++ ME LSRL+ K S + +HP+ E++IS L FADDLM+F G S++ +
Sbjct: 656 SPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIK 715
Query: 2931 DCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLN 3110
L FK +SGL++N+ KS V+TAG+ D + L F +G+ P RYLG+PL +KL
Sbjct: 716 SVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFPFRYLGLPLLHRKLR 774
Query: 3111 SVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYML 3290
Y+ L D+IAA N W +L++AGRL LI SV+ FWL F LPK +K I +
Sbjct: 775 RSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQM 834
Query: 3291 CRTFLWG-----KKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLW 3455
C FLWG + +SW C+P EGGLG+RN + WNK L + +W + DSLW
Sbjct: 835 CNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLW 894
Query: 3456 VKWVHAFYLKRQSIWDWNPKKDDSTLLKRI 3545
V W HA L+ + W+ S + K I
Sbjct: 895 VAWNHANRLRHVNFWNAEAASHHSWIWKAI 924
Score = 78.2 bits (191), Expect = 3e-11
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Frame = +3
Query: 3639 SSKI-YDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLTYTDIN--PMC 3809
SSK+ ++ R W AAVW PKY+F W+A +RL T+ N +C
Sbjct: 1034 SSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLC 1093
Query: 3810 KLCSQQLESAPHLFFTCPITNLLWNRIKAWLKIHRSMSTLASAIKWIRKDKA--DPILKK 3983
+C ++ E+ HLF C + +L+W ++ A + I+W+ ++ LKK
Sbjct: 1094 CVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIEWMLSNQGSFSGTLKK 1153
Query: 3984 ARAVAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKI 4091
+A +I+HIWK RN+ + S+ A+FK+I
Sbjct: 1154 ---LAVQTAIFHIWKERNSRLHSAMSASHTAIFKQI 1186
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 565 bits (1455), Expect = e-158
Identities = 333/951 (35%), Positives = 516/951 (54%), Gaps = 26/951 (2%)
Frame = +3
Query: 810 WNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLED--DICFDSALCNFIVKTKFPGWLY 983
WN+RGF N + ++K + ++ET ++ D F +AL PGW +
Sbjct: 8 WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINAL--------LPGWSF 59
Query: 984 SNNFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDR 1163
N+ G++ ++W+PS V V ++ S Q+I C+++ S + I S VY V R
Sbjct: 60 VENYAFSDLGKIWVMWDPS-VQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASR 118
Query: 1164 RLLWDDLYNIGHSLI---DPWLILGDFNCIKSPDEKLNGAAIN-NYDLKDFQDICLTLGL 1331
+ LW ++ N+ S I PWL+LGDFN + +P E N ++N + +++DF+D L L
Sbjct: 119 KELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAEL 178
Query: 1332 NDVQTTGCFFTWTNNSAWC----RLDRALVNSAWAQLGLQISAHAPVPGAI--SDHXXXX 1493
+D++ G FTW N S ++DR LVN +W L + + G++ SDH
Sbjct: 179 SDLRYKGNTFTWWNKSHTTPVAKKIDRILVNDSWNAL---FPSSLGIFGSLDFSDHVSCG 235
Query: 1494 XXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFN-PVWGTAQFMXXXXXXXXXXXXXX 1670
+PFKFFN + FLN+V++ WF V G++ F
Sbjct: 236 VVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKD 295
Query: 1671 XXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQ 1850
++S + R KEA D L Q++ DP + SFE+++++ K LT AE+ F Q
Sbjct: 296 FSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAER-KWHILTAAEESFFRQ 354
Query: 1851 KAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFG 2030
K++ S+ D NTK+FH + +S++ +G S + + D +++ L G
Sbjct: 355 KSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLG 414
Query: 2031 TY---YSTNPIDQSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSA 2201
Y D +++ C + L S DI+AA+F++ ++S GPDG+++
Sbjct: 415 DEVDPYLMEQNDMNLLLSYRCSPAQVCELEST-FSNEDIRAALFSLPRNKSCGPDGFTAE 473
Query: 2202 FFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVY 2381
FF SW IVG +V +AI+EFFS+ LLKQ N T+I LIPK + +DFRPI+C N +Y
Sbjct: 474 FFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLY 533
Query: 2382 KAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVD 2561
K I +++ RL+++L +I+ AQ+AF+ GR++ +N+ LA +++ Y ISPR +KVD
Sbjct: 534 KVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVD 593
Query: 2562 IKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQG 2741
+KKA+D+V W F+ L + P FI+W+ +C+++ +F++ ING G F +GLRQG
Sbjct: 594 LKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQG 653
Query: 2742 DPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVK 2921
DP+SP LF+L ME S L++ + +HP+ L ISHL+FADD+M+F G S+
Sbjct: 654 DPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLH 713
Query: 2922 ILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLN-LLNFPSGSLPVRYLGVPLAA 3098
+ + L +F SGL +N KS+++ AG+ L++ N FP G+LP+RYLG+PL
Sbjct: 714 GICETLDDFASWSGLKVNKDKSHLYLAGL--NQLESNANAAYGFPIGTLPIRYLGLPLMN 771
Query: 3099 QKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKR 3278
+KL Y PL ++I A W L++AGR+ LI SV+ G FW+ F LPK +KR
Sbjct: 772 RKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKR 831
Query: 3279 IYMLCRTFLWG-----KKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKT 3443
I LC FLW K +SW +C+P EGGLG+R + WNK L + +W +
Sbjct: 832 IESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAK 891
Query: 3444 DSLWVKWVHAFYLKRQSIWDWNPKKDDSTLLKRINDVK----NELLCKFGN 3584
DSLW W H +L R S W + DS KR+ ++ L+CK GN
Sbjct: 892 DSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGN 942
Score = 63.9 bits (154), Expect = 6e-07
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Frame = +3
Query: 3627 KGLISSKIYDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNL-TYTDI-N 3800
+G ++K ++ R W +++W PKY+F W++ +RL T L ++ I +
Sbjct: 1031 QGFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQS 1090
Query: 3801 PMCKLCSQQLESAPHLFFTCPITNLLWNRI-KAWLKIHRSMSTLASAIKWIRKD--KADP 3971
C LCS ES HL C + +W + + R S+ + + W+R+ +A P
Sbjct: 1091 DACVLCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQSSPEAPP 1150
Query: 3972 ILKKARAVAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHVYQVIYS 4121
+L+K + +Y++W+ RN + + + +FK + + +I S
Sbjct: 1151 LLRK---IVSQVVVYNLWRQRNNLLHNSLRLAPAVIFKLVDREIRNIISS 1197
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 555 bits (1429), Expect = e-155
Identities = 358/1179 (30%), Positives = 553/1179 (46%), Gaps = 103/1179 (8%)
Frame = +3
Query: 810 WNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKFPGWLYSN 989
WNVRG KH+ + +I+E+N CL+ET++++ + + +V F W
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKE------SKVSQLVGKLFKDWSILT 59
Query: 990 NFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRRL 1169
N+ R GR+ ++W +V + ++ S QL+ C + F SFVY V +R++
Sbjct: 60 NYEHNRRGRIWVLWR-KNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKV 118
Query: 1170 LWDDLYNIGHSLI---DPWLILGDFNCIKSPDEKLNGAA--INNYDLKDFQDICLTLGLN 1334
LW +L + S I PW +LGDFN E + ++DFQ + L
Sbjct: 119 LWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLT 178
Query: 1335 DVQTTGCFFTWTNNSA----WCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXXXX 1502
D+ G FTW N +LDR L+N W Q Q S G SDH
Sbjct: 179 DMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQ-SYSVFEAGGCSDHLRCRISL 237
Query: 1503 XXXXXXXX---KPFKFFNMWTSHPSFLNVVQNAWFNP----VWGTAQFMXXXXXXXXXXX 1661
KPFKF N T F +V W + + + F
Sbjct: 238 NSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPK 297
Query: 1662 XXXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMF 1841
++S + EA L + Q+ +P + ++ E + + + E+ +
Sbjct: 298 IRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAME-EENAAYSRWDRVAILEEKY 356
Query: 1842 LSQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKG 2021
L QK+K + + D+NTK FH + + DG T E+ F++
Sbjct: 357 LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFRE 416
Query: 2022 LF----GTYYSTNPIDQSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDG 2189
+ + + C + +L+ PV +I+ +F + D+SPGPDG
Sbjct: 417 FLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIR-PVTAEEIRKVLFRMPSDKSPGPDG 475
Query: 2190 YSSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACC 2369
Y+S FFK +W+I+G++ A+Q FF+ L K IN T + LIPK + + D+RPI+CC
Sbjct: 476 YTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCC 535
Query: 2370 NVVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCT 2549
NV+YK I+KIIA RL+ VLP I Q+AFV R + +N+ LA E++++Y + IS RC
Sbjct: 536 NVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCA 595
Query: 2550 IKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERG 2729
IK+DI KA+D+V W FL + +GFP FI W+ C+T+ASFS+ +NG L G F RG
Sbjct: 596 IKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRG 655
Query: 2730 LRQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDP 2909
LRQG +SP LF++CM+ LS++++ + +F +HP+C + ++HL FADDLM+ + G
Sbjct: 656 LRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKI 715
Query: 2910 PSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVP 3089
S++ ++ EF K SGL I+ KS V+ AG+ + + + F SG LPVRYLG+P
Sbjct: 716 RSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLP 775
Query: 3090 LAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSV 3269
L ++L++ PL +++ I WT+ L+YAGRL LI SVL + FWL F LP+
Sbjct: 776 LITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKC 835
Query: 3270 VKRIYMLCRTFLWG-----KKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFH 3434
++ + +C FLW + ISWH +C P DEGGLG+R++ N K +W
Sbjct: 836 IRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIV 895
Query: 3435 LKTDSLWVKWVHAFYLKRQSI-----------WDWNPKKDDSTLLKRINDVK--NELLCK 3575
++SLWVKWV L+ S W W + K ++ V+ N
Sbjct: 896 SHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTS 955
Query: 3576 FGNQN-AVIANLLAFSNHKGLIS----------------------SKIYDIFRDHGEKNF 3686
F N + + LL + +GLI + +Y++ D +K++
Sbjct: 956 FWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSW 1015
Query: 3687 ----------------------------------------WKAAVWKSFIPPKYSFCAWM 3746
W +W S PKYSFC+W+
Sbjct: 1016 DTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWL 1075
Query: 3747 AFNDRLATINNLT--YTDINPMCKLCSQQLESAPHLFFTCPITNLLWNRIKAWLKIHRSM 3920
A + RL T + + I C C LE+ HLFFTC T+++W + + +
Sbjct: 1076 AAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYT 1135
Query: 3921 STLASAIKWIRKDKADPILKKARAVAFCCSIYHIWKARN 4037
S S I+ I + + R F +IY +W+ RN
Sbjct: 1136 SHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERN 1174
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 519 bits (1336), Expect = e-144
Identities = 325/1094 (29%), Positives = 539/1094 (49%), Gaps = 27/1094 (2%)
Frame = +3
Query: 891 CLLETKLEDDICFDSALCNFIVKTKFPGWLYSNNFHEYRNGRMLLIWNPSSVHVDILFIS 1070
C+LET++ +S + K F W +N+ R GR+ ++W+ SSV + ++F S
Sbjct: 335 CVLETRV-----IESKVPVIFAKV-FKDWQMVSNYEFNRLGRIWVVWS-SSVQLQVIFKS 387
Query: 1071 SQLIHCKIICNISHATFITSFVYGLYSVGDRRLLWDDLYNIGHSLI---DPWLILGDFNC 1241
SQ+I C + FI SF+Y V +R+ LW DL+N+ +S+ PWL+ GDFN
Sbjct: 388 SQMIVCLVRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNE 447
Query: 1242 IKSPDEKLNGAA--INNYDLKDFQDICLTLGLNDVQTTGCFFTW---TNNSAWCR-LDRA 1403
+E + A + ++DFQ + L D++T G FTW N C+ LDR
Sbjct: 448 TLKMEEHSSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRV 507
Query: 1404 LVNSAWAQLGLQISAHAPVPGAISDHXXXXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVV 1583
L+N + S G SDH PFKF N+ +HP F+ V
Sbjct: 508 LLNPEYNS-AYPHSYCIMDSGGCSDHLRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKV 566
Query: 1584 QNAWFNPVWGTAQFMXXXXXXXXXXXXXXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDP 1763
++ W N + S ++KE K L L +L
Sbjct: 567 EDFWKNTT------------------ELFPSTSTLFRFSKKLKELKPILKDLSRN-NLSD 607
Query: 1764 LNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFLNLSD--KNTKFFHSIIKRNALKRQ 1937
L ++ E++ Q + LN D + F K L
Sbjct: 608 LTRRATYAY-------------EELCRCQTKSLTTLNPHDIVDESLAFERWEKERHLLNA 654
Query: 1938 LSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTY---YSTNPIDQ--SVINHGPCLTEEHA 2102
+ V GT+ + ++ V F+ L + ++ +D+ ++ + L E+
Sbjct: 655 IHEVMDPQGTRPPNQDDIKIEAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQ-- 712
Query: 2103 NLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDIVGNDVINAIQEFFSNAKLL 2282
NLL A + +++ F+I ++SPGPDGY+ FF+++W ++G +V AI+ FF+ L
Sbjct: 713 NLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLP 772
Query: 2283 KQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIAARLEKVLPSLINPAQAAFV 2462
K +N T + LIPK ++ + D+RPI+CCNV+YKAI+K++A RL+ +LP I P Q+AF+
Sbjct: 773 KGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFI 832
Query: 2463 GGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFI 2642
R + +N+ LA E++++Y + +SPRC +K+D+ KA+D+V W FL LA + P FI
Sbjct: 833 SDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFI 892
Query: 2643 SWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSN 2822
W+ C+++ASFS+ +N GLRQG +SP LF++CM LS +++
Sbjct: 893 HWINLCISTASFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKR 941
Query: 2823 FKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTA 3002
F +HPRC + ++HL FADD+M+F+ G S++ ++ +F SGL+I+ KS +F A
Sbjct: 942 FGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMA 1001
Query: 3003 GVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLT 3182
+ ++L F SGSLPVRYLG+PL +++ PL ++I + I+ W L+
Sbjct: 1002 SISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLS 1061
Query: 3183 YAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTFLW-----GKKRPPISWHKIC 3347
YAGRL L+ SV+ + FW+ F LP++ ++ I + FLW + ++WH +C
Sbjct: 1062 YAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVC 1121
Query: 3348 MPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVHAFYLK--RQSIWDWNPKKD 3521
P EGGLG+R++ NK K +W SLWV W+ ++ +++ +
Sbjct: 1122 KPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIRTVAEALSSHRRRSH 1181
Query: 3522 DSTLLKRINDVKNELLCK--FGNQNAVIANLLAFSNHKGLISSKIYDIFRDHGEKNFWKA 3695
+L I + +LLC+ Q+ + + S +I+ R+ G W
Sbjct: 1182 RDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWHQIREQGLVKQWHK 1241
Query: 3696 AVWKSFIPPKYSFCAWMAFNDRLATINNLTYTD--INPMCKLCSQQLESAPHLFFTCPIT 3869
A+W S PK++F +W+A +DRL T + + + I+ +C LC+ ES HLFF+C +
Sbjct: 1242 AIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSCNFS 1301
Query: 3870 NLLWNRIKAWLKIHRSMSTLASAIKWIRKDKADPILKKARAVAFCCSIYHIWKARNAHVF 4049
+ +W+R+ L + R + + + + + F +I+ +W+ RN
Sbjct: 1302 SHIWDRLTRRLLLCRYTTNFPALLLLLSGQDFSGTKRFLLRYVFQATIHTLWRERNKRRH 1361
Query: 4050 DGDPFSYEAVFKKI 4091
P + + K I
Sbjct: 1362 GDLPIPSDHIIKFI 1375
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 518 bits (1335), Expect = e-144
Identities = 303/919 (32%), Positives = 482/919 (52%), Gaps = 19/919 (2%)
Frame = +3
Query: 795 MKIAVWNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKFPG 974
MK+ WN+RG + + + ++I +NL + C LET + + N ++ + PG
Sbjct: 1 MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENA------NSVLASTLPG 54
Query: 975 WLYSNNFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSV 1154
W +N+ GR+ ++W+PS + V + + Q++ C I +F +FVYG S
Sbjct: 55 WRMDSNYCCSELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSE 113
Query: 1155 GDRRLLWDDLYNIGHSL---IDPWLILGDFNCIKSPDE--KLNGAAINNYDLKDFQDICL 1319
DRR LW+D+ + + + PWL+LGDFN I + E +N + +N ++D Q
Sbjct: 114 LDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLR 173
Query: 1320 TLGLNDVQTTGCFFTWTN----NSAWCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXX 1487
L+D+ + G FFTW+N N +LDRAL N W + A PG SDH
Sbjct: 174 DSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAP 232
Query: 1488 XXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAW-FNPVWGTAQFMXXXXXXXXXXXX 1664
K FK+F+ +SHPS+L + AW N + G+ F
Sbjct: 233 CIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCC 292
Query: 1665 XXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFL 1844
FS+I R ++ L+ +Q +L P ++ E ++K + I A + F
Sbjct: 293 RTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARK-QWIFFAAALESFF 351
Query: 1845 SQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGL 2024
QK++ +L+ D NT+FFH + + + + DG + ++ ++ + +Y L
Sbjct: 352 RQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHL 411
Query: 2025 FGTYYSTNPIDQSVINHGPCLTEEHANLLSAPV--LPSD--IKAAIFNIDDDRSPGPDGY 2192
G S N SV L + L++ + +PS+ I +F++ +++PGPDG+
Sbjct: 412 LGIP-SENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGF 470
Query: 2193 SSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCN 2372
FF ++W IV + V+ AI+EFF + L + N T+ITLIPK + + FRP+ACC
Sbjct: 471 PVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCT 530
Query: 2373 VVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTI 2552
+YK IT+II+ RL+ + + Q F+ GR + +N+ LA E++ N+ + R +
Sbjct: 531 TIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCL 590
Query: 2553 KVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGL 2732
+VDI KAYD V+W FL IL + P +FI W+ C++SAS+S+ NG L G F G++G+
Sbjct: 591 QVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGI 650
Query: 2733 RQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPP 2912
RQGDPMS LF+L M+ LS+ +++ + F HP C I+HL FADD+++F+ G
Sbjct: 651 RQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAAS 710
Query: 2913 SVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPL 3092
S+ ++ L +F++ SGL IN K+ + G +L + L GSLPVRYLGVPL
Sbjct: 711 SIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPL 770
Query: 3093 AAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVV 3272
+QK+ Y PL DRI + WTA L++AGRL L+KSV+ FW +F P +
Sbjct: 771 MSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCL 830
Query: 3273 KRIYMLCRTFLW-----GKKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHL 3437
+++ +C FLW + ISW+ +C P + GGLG++ + +WN+ L K +W
Sbjct: 831 QKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFT 890
Query: 3438 KTDSLWVKWVHAFYLKRQS 3494
SLWV WV + R++
Sbjct: 891 SAGSLWVSWVRLHLIGRRN 909
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 503 bits (1296), Expect = e-139
Identities = 280/797 (35%), Positives = 445/797 (55%), Gaps = 18/797 (2%)
Frame = +3
Query: 1221 ILGDFNCIKSPDEKLNGAAIN-NYDLKDFQDICLTLGLNDVQTTGCFFTWTNNSAWC--- 1388
+LGDFN + P E N ++N + ++DF + L+D+ G FTW N S+
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60
Query: 1389 -RLDRALVNSAWAQLGLQISAHAPVPGA-ISDHXXXXXXXXXXXXXXXKPFKFFNMWTSH 1562
+LDR L N +W L S+H SDH +PFKFFN +
Sbjct: 61 KKLDRILANDSWCNL--YPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKN 118
Query: 1563 PSFLNVVQNAWFNP-VWGTAQFMXXXXXXXXXXXXXXXXSQHFSHISSRVKEAKDTLDSL 1739
FLNVV + WF+ V G++ + ++S I R KEA + L +
Sbjct: 119 EDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITC 178
Query: 1740 QNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFLNLSDKNTKFFHSIIKR 1919
QN +P S+ + E+++Q+ K + L+ AE+ F Q+++ S+ D NT +FH ++
Sbjct: 179 QNLTLANPSVSNAALELEAQR-KWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDS 237
Query: 1920 NALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYSTNPIDQSVINHGPCLT--- 2090
++S+ +G S + + D V +Y+ L G+ S ++Q +N LT
Sbjct: 238 RKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNL--LLTYRC 295
Query: 2091 -EEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDIVGNDVINAIQEFFS 2267
++ + L +IKAA ++ +++ GPDGYS FF+ +W I+G +V+ AI EFF
Sbjct: 296 SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355
Query: 2268 NAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIAARLEKVLPSLINPA 2447
+ +LLKQ N T++ LIPKT ++ ++++FRPI+C N +YK I+K++ +RL+ +L ++I +
Sbjct: 356 SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415
Query: 2448 QAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYDTVSWSFLHGILAGMGF 2627
Q+AF+ GR++ +N+ LA E++ Y R ISPR +KVD+KKA+D+V W F+ L +
Sbjct: 416 QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475
Query: 2628 PNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLFILCMEYLSRLINIK 2807
P +I+W+ +C+T+ SF++ +NG+ G F +GLRQGDP+SP LF+L ME S+L+ +
Sbjct: 476 PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535
Query: 2808 TSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKS 2987
+HP+ G+L ISHL+FADD+M+F G S+ + + L +F SGL +N KS
Sbjct: 536 YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595
Query: 2988 NVFTAGVFGPDLDALLN--LLNFPSGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYINK 3161
+F AG+ DL + FP+G+ P+RYLG+PL +KL Y PL ++++A +
Sbjct: 596 QLFQAGL---DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRS 652
Query: 3162 WTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTFLW-----GKKRPP 3326
W + +L++AGR LI SV+ G+ FW+ F LPK +K+I LC FLW G+K
Sbjct: 653 WVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSK 712
Query: 3327 ISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVHAFYLKRQSIWDW 3506
+SW C+P EGGLG R+ WNK LL + +W + SLW +W L S W
Sbjct: 713 VSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQV 772
Query: 3507 NPKKDDSTLLKRINDVK 3557
N + D K + +++
Sbjct: 773 NALQTDPWTWKMLLNLR 789
Score = 61.6 bits (148), Expect = 3e-06
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Frame = +3
Query: 3627 KGLISSKIYDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLTYTDI--N 3800
+G ++K +++ R W +VW PK++F W A +RL T L + +
Sbjct: 890 QGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSS 949
Query: 3801 PMCKLCSQQLESAPHLFFTCPITNLLWNRIKAWLKI---HRSMSTLASAIKWIRKD-KAD 3968
C LCS E+ HL C ++ +W + +L++ R + T A + W R+ A
Sbjct: 950 AECCLCSFDTETRDHLLLLCDFSSQVWRMV--FLRLCPRQRLLCTWAELLSWTRQSTAAA 1007
Query: 3969 PILKKARAVAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHVYQVIYS 4121
P L R V +Y++W+ RN + S VF+ + + VI S
Sbjct: 1008 PSL--LRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 503 bits (1296), Expect = e-139
Identities = 280/797 (35%), Positives = 445/797 (55%), Gaps = 18/797 (2%)
Frame = +3
Query: 1221 ILGDFNCIKSPDEKLNGAAIN-NYDLKDFQDICLTLGLNDVQTTGCFFTWTNNSAWC--- 1388
+LGDFN + P E N ++N + ++DF + L+D+ G FTW N S+
Sbjct: 1 MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60
Query: 1389 -RLDRALVNSAWAQLGLQISAHAPVPGA-ISDHXXXXXXXXXXXXXXXKPFKFFNMWTSH 1562
+LDR L N +W L S+H SDH +PFKFFN +
Sbjct: 61 KKLDRILANDSWCNL--YPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKN 118
Query: 1563 PSFLNVVQNAWFNP-VWGTAQFMXXXXXXXXXXXXXXXXSQHFSHISSRVKEAKDTLDSL 1739
FLNVV + WF+ V G++ + ++S I R KEA + L +
Sbjct: 119 EDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITC 178
Query: 1740 QNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFLNLSDKNTKFFHSIIKR 1919
QN +P S+ + E+++Q+ K + L+ AE+ F Q+++ S+ D NT +FH ++
Sbjct: 179 QNLTLANPSVSNAALELEAQR-KWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDS 237
Query: 1920 NALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYSTNPIDQSVINHGPCLT--- 2090
++S+ +G S + + D V +Y+ L G+ S ++Q +N LT
Sbjct: 238 RKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNL--LLTYRC 295
Query: 2091 -EEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDIVGNDVINAIQEFFS 2267
++ + L +IKAA ++ +++ GPDGYS FF+ +W I+G +V+ AI EFF
Sbjct: 296 SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355
Query: 2268 NAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIAARLEKVLPSLINPA 2447
+ +LLKQ N T++ LIPKT ++ ++++FRPI+C N +YK I+K++ +RL+ +L ++I +
Sbjct: 356 SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415
Query: 2448 QAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYDTVSWSFLHGILAGMGF 2627
Q+AF+ GR++ +N+ LA E++ Y R ISPR +KVD+KKA+D+V W F+ L +
Sbjct: 416 QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475
Query: 2628 PNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLFILCMEYLSRLINIK 2807
P +I+W+ +C+T+ SF++ +NG+ G F +GLRQGDP+SP LF+L ME S+L+ +
Sbjct: 476 PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535
Query: 2808 TSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKS 2987
+HP+ G+L ISHL+FADD+M+F G S+ + + L +F SGL +N KS
Sbjct: 536 YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595
Query: 2988 NVFTAGVFGPDLDALLN--LLNFPSGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYINK 3161
+F AG+ DL + FP+G+ P+RYLG+PL +KL Y PL ++++A +
Sbjct: 596 QLFQAGL---DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRS 652
Query: 3162 WTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTFLW-----GKKRPP 3326
W + +L++AGR LI SV+ G+ FW+ F LPK +K+I LC FLW G+K
Sbjct: 653 WVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSK 712
Query: 3327 ISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVHAFYLKRQSIWDW 3506
+SW C+P EGGLG R+ WNK LL + +W + SLW +W L S W
Sbjct: 713 VSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQV 772
Query: 3507 NPKKDDSTLLKRINDVK 3557
N + D K + +++
Sbjct: 773 NALQTDPWTWKMLLNLR 789
Score = 61.6 bits (148), Expect = 3e-06
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Frame = +3
Query: 3627 KGLISSKIYDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLTYTDI--N 3800
+G ++K +++ R W +VW PK++F W A +RL T L + +
Sbjct: 890 QGFSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSS 949
Query: 3801 PMCKLCSQQLESAPHLFFTCPITNLLWNRIKAWLKI---HRSMSTLASAIKWIRKD-KAD 3968
C LCS E+ HL C ++ +W + +L++ R + T A + W R+ A
Sbjct: 950 AECCLCSFDTETRDHLLLLCDFSSQVWRMV--FLRLCPRQRLLCTWAELLSWTRQSTAAA 1007
Query: 3969 PILKKARAVAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHVYQVIYS 4121
P L R V +Y++W+ RN + S VF+ + + VI S
Sbjct: 1008 PSL--LRKVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 497 bits (1280), Expect = e-137
Identities = 320/1016 (31%), Positives = 492/1016 (48%), Gaps = 97/1016 (9%)
Frame = +3
Query: 1122 ITSFVYGLYSVGDRRLLWDDLYNIGHS--LID-PWLILGDFNCIKSPDEKLNGAAIN-NY 1289
+ SFVY R++LW+++ + + +ID PW +LGDFN I P E N +
Sbjct: 2 VLSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDR 61
Query: 1290 DLKDFQDICLTLGLNDVQTTGCFFTWTNNSAWC----RLDRALVNSAWAQLGLQISAHAP 1457
+ F++ L L D+ G FTW N + +LDR LVN W
Sbjct: 62 PTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFG 121
Query: 1458 VPGAISDHXXXXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFNP-VWGTAQFMXX 1634
P SDH KPF+F N +FL+++ WF+ V G+A +
Sbjct: 122 EPD-FSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVS 180
Query: 1635 XXXXXXXXXXXXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVI 1814
++S I R KEA D L Q+ L P S+ + E ++Q+ K
Sbjct: 181 VKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQR-KWR 239
Query: 1815 SLTKAEKMFLSQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELS 1994
L +AE F Q+++ ++L D N+ +FH + + +S G + + L
Sbjct: 240 ILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLE 299
Query: 1995 DAFVNFYKGLFGTYYSTNPIDQSVINH---GPCLTEEHANLLSAPVLPSDIKAAIFNIDD 2165
+ V +++ G+ +Q+ I++ C + +L P IK A F++
Sbjct: 300 NHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSL-DTPFSSEQIKNAFFSLPR 358
Query: 2166 DRSPGPDGYSSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVA 2345
+++ GPDG+S FF W I+G +V AI EFF++ KLLKQ N T++ LIPK ++ S++
Sbjct: 359 NKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMS 418
Query: 2346 DFRPIACCNVVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYAR 2525
DFRPI+C N VYK I+K++ RL+ LP+ I+ +Q+AF+ GR +N+ LA E++ Y +
Sbjct: 419 DFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNK 478
Query: 2526 KRISPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLK 2705
K I+P +KVD++KA+D+V W F+ L + P F W++EC+++ASFS+ +NG
Sbjct: 479 KNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSA 538
Query: 2706 GKFPGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDL 2885
G F +GLRQGDPMSP LF+L ME S L+ + + +HP+ +L+ISHL+FADD+
Sbjct: 539 GHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDV 598
Query: 2886 MLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSL 3065
M+F G S+ +++ L +F SGL +N+ K+ ++ AG+ + D++ + F GSL
Sbjct: 599 MIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMAS-YGFKLGSL 657
Query: 3066 PVRYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQ 3245
PVRYLG+PL ++KL YAPL ++I A N W L++AGR+ L+ SV+ G+ FW+
Sbjct: 658 PVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWIS 717
Query: 3246 IFPLPKSVVKRIYMLCRTFLWG-----KKRPPISWHKICMPSDEGGLGIRNVYAWNKALL 3410
F LP +K+I LC FLW K ++W ++C+P EGG+G+R N+ L
Sbjct: 718 SFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLY 777
Query: 3411 SKNLWNFHLKTDSLWVKWVHAFYL-KRQSIWDWNPKKDDS---TLLKRINDVKNELL-CK 3575
+ +W + SLWV W L K S W+ K DS L R+ V + C
Sbjct: 778 LRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCN 837
Query: 3576 FGNQN---------AVIANLLAFSNHKG------LISSKIYDIFRDHGE----------- 3677
GN L+ F ++G +++KI D+ G
Sbjct: 838 VGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQAL 897
Query: 3678 ------------------------------KNFWKAAVWKSFIP---------------- 3719
+ F AA W + P
Sbjct: 898 SLHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGA 957
Query: 3720 -PKYSFCAWMAFNDRLATINNLTY--TDINPMCKLCSQQLESAPHLFFTCPITNLL 3878
PK++F W A DRL T L I+ C LCS E+ HLF +C N L
Sbjct: 958 TPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFL 1013
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 492 bits (1267), Expect = e-136
Identities = 303/913 (33%), Positives = 477/913 (52%), Gaps = 27/913 (2%)
Frame = +3
Query: 798 KIAVWNVRGFKNPIKHNQLLAFIKEHNLNILC---LLETKLEDDICFDSALCNFIVKTKF 968
K+ WNVRGF N H + F K LN L+ET ++ +
Sbjct: 4 KLFCWNVRGF-NISSHRR--GFKKWFLLNKPLFGGLIETHVKQP------KEKKFISNLL 54
Query: 969 PGWLYSNNFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLY 1148
PGW + N+ G++ ++W+PS V V ++ S Q+I C+++ S + F+ S VY
Sbjct: 55 PGWSFVENYEFSVLGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASN 113
Query: 1149 SVGDRRLLWDDLYNIGHSLI---DPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICL 1319
G R+ LW++L + S + W++LGDFN I +P+ +N A ++ F+ L
Sbjct: 114 EEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAIN--ANIGRKIRAFRSCLL 171
Query: 1320 TLGLNDVQTTGCFFTWTNNSAWC----RLDRALVNSAWAQLGLQISAHAPVPGAISDHXX 1487
L D+ G +TW N + ++DR LVN W L A+ P SDH
Sbjct: 172 DSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSS 230
Query: 1488 XXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFN-PVWGTAQFMXXXXXXXXXXXX 1664
+PF+FFN + +P FL +++ W++ V G+A +
Sbjct: 231 CEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPI 290
Query: 1665 XXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFL 1844
+++S I RV EA + Q +P + E+++ + I L KAE+ F
Sbjct: 291 CCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQI-LAKAEESFF 349
Query: 1845 SQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDG-------TQTTSLKELSDAF 2003
QK+ S+L D NT +FH K +++ +++++ L TQ + + +
Sbjct: 350 CQKSSISWLYEGDNNTAYFH---KMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHS 406
Query: 2004 VNFYKGLFGTYYSTNPIDQSVIN---HGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRS 2174
NF++ L N + QS +N C ++ N L DI+ A F++ +++
Sbjct: 407 CNFFESLLCGVEGENSLAQSDMNLLLSFRCSVDQ-INDLERSFSDLDIQEAFFSLPRNKA 465
Query: 2175 PGPDGYSSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFR 2354
GPDGYSS FFK W +VG +V A+QEFF + +LLKQ N T++ LIPK +S + DFR
Sbjct: 466 SGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFR 525
Query: 2355 PIACCNVVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRI 2534
PI+C N +YK I K++ +RL+K+L +I+P+Q+AF+ GR +++N+ LA EI+ Y K I
Sbjct: 526 PISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNI 585
Query: 2535 SPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKF 2714
S R +KVD++KA+D+V W F+ + P F+ W+ +C+++ FS+ +NGS G F
Sbjct: 586 SSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFF 645
Query: 2715 PGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLF 2894
+GLRQGDP+SP LF+L ME S L+ + +HP+ +L ISHL+FADD+M+F
Sbjct: 646 KSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVF 705
Query: 2895 AKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDAL-LNLLNFPSGSLPV 3071
G S+ + + L +F SGL +N K+N++ AG +++AL ++ FP +LP+
Sbjct: 706 FDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT--DEVEALAISHYGFPISTLPI 763
Query: 3072 RYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIF 3251
RYLG+PL ++KL Y + W SL++AGR+ LI SV+ G+ FW+ F
Sbjct: 764 RYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTF 818
Query: 3252 PLPKSVVKRIYMLCRTFLW-----GKKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSK 3416
L VK+I LC FLW K I+W +C+P +EGG+G+R WNK +
Sbjct: 819 VLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLR 878
Query: 3417 NLWNFHLKTDSLW 3455
+W D LW
Sbjct: 879 FIWPLFADNDVLW 891
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 491 bits (1263), Expect = e-135
Identities = 302/913 (33%), Positives = 477/913 (52%), Gaps = 27/913 (2%)
Frame = +3
Query: 798 KIAVWNVRGFKNPIKHNQLLAFIKEHNLNILC---LLETKLEDDICFDSALCNFIVKTKF 968
K+ WNVRGF N H + F K LN L+ET ++ +
Sbjct: 4 KLFCWNVRGF-NISSHRR--GFKKWFLLNKPLFGGLIETHVKQP------KEKKFISNLL 54
Query: 969 PGWLYSNNFHEYRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLY 1148
PGW + N+ G++ ++W+PS V V ++ S Q+I C+++ S + F+ S VY
Sbjct: 55 PGWSFVENYEFSVLGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASN 113
Query: 1149 SVGDRRLLWDDLYNIGHSLI---DPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICL 1319
G R+ LW++L + S + W++LGDFN I +P+ +N A ++ F+ L
Sbjct: 114 EEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAIN--ANIGRKIRAFRSCLL 171
Query: 1320 TLGLNDVQTTGCFFTWTNNSAWC----RLDRALVNSAWAQLGLQISAHAPVPGAISDHXX 1487
L D+ G +TW N + ++DR LVN W L A+ P SDH
Sbjct: 172 DSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSS 230
Query: 1488 XXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFN-PVWGTAQFMXXXXXXXXXXXX 1664
+PF+FFN + +P FL +++ W++ V G+A +
Sbjct: 231 CEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPI 290
Query: 1665 XXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFL 1844
+++S I RV EA + Q +P + E+++ + I L KAE+ F
Sbjct: 291 CCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQI-LAKAEESFF 349
Query: 1845 SQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDG-------TQTTSLKELSDAF 2003
QK+ S+L D NT +FH K +++ +++++ L TQ + + +
Sbjct: 350 CQKSSISWLYEGDNNTAYFH---KMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHS 406
Query: 2004 VNFYKGLFGTYYSTNPIDQSVIN---HGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRS 2174
NF++ L N + QS +N C ++ N L DI+ A F++ +++
Sbjct: 407 CNFFESLLCGVEGENSLAQSDMNLLLSFRCSVDQ-INDLERSFSDLDIQEAFFSLPRNKA 465
Query: 2175 PGPDGYSSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFR 2354
GPDGYSS FFK W +VG +V A+QEFF + +LLKQ N T++ LIPK +S + DFR
Sbjct: 466 SGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFR 525
Query: 2355 PIACCNVVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRI 2534
PI+C N +YK I K++ +RL+K+L +I+P+Q+AF+ GR +++N+ LA EI+ Y K I
Sbjct: 526 PISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNI 585
Query: 2535 SPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKF 2714
S R +KVD++KA+D+V W F+ + P F+ W+ +C+++ FS+ +NGS G F
Sbjct: 586 SSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFF 645
Query: 2715 PGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLF 2894
+GLRQGDP+SP LF+L ME S L+ + ++HP+ +L ISHL+FADD+M+F
Sbjct: 646 KSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVF 705
Query: 2895 AKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDAL-LNLLNFPSGSLPV 3071
G S+ + + L +F SGL +N K+N++ AG +++AL ++ FP +LP+
Sbjct: 706 FDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT--DEVEALAISHYGFPISTLPI 763
Query: 3072 RYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIF 3251
RYLG+PL ++KL Y + W SL++AGR+ LI SV+ G+ FW+ F
Sbjct: 764 RYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTF 818
Query: 3252 PLPKSVVKRIYMLCRTFLW-----GKKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSK 3416
L VK+I LC FLW K I+W +C+P +EGG+ +R WNK +
Sbjct: 819 VLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLR 878
Query: 3417 NLWNFHLKTDSLW 3455
+W D LW
Sbjct: 879 FIWPLFADNDVLW 891
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 483 bits (1244), Expect = e-133
Identities = 281/855 (32%), Positives = 445/855 (52%), Gaps = 20/855 (2%)
Frame = +3
Query: 1011 GRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRRLLWDDLYN 1190
GR+ ++W ++ + +F SSQ+I C I+ F SF+Y V +RR+LW+D+ +
Sbjct: 428 GRIWVVWRDNA-RLTPVFKSSQMITCSILLEGKEEEFFCSFIYASNFVEERRILWEDIRS 486
Query: 1191 IGHSLI---DPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICLTLGLNDVQTTGCFF 1361
S + PW++ GDFN E L G +NYD + G+ D Q G
Sbjct: 487 HHDSPLIRNKPWILCGDFN------EILEGGEHSNYDNSPYTPP----GMRDFQEIG--- 533
Query: 1362 TWTNNSAWCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXXXXXXXXXXXXKPFKF 1541
++ A G KPFKF
Sbjct: 534 -------------------------RLMLEAAATGG------------------RKPFKF 550
Query: 1542 FNMWTSHPSFLNVVQNAWFNP----VWGTAQFMXXXXXXXXXXXXXXXXSQHFSHISSRV 1709
N+ T P FL VV++ W + V +A + + + R
Sbjct: 551 VNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGDLPKRT 610
Query: 1710 KEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFLNLSDKN 1889
+EA L Q +P +++ E+K+ L++ E+ FL QK+K ++N+ D N
Sbjct: 611 REAHILLCEKQATTLANPSQETIAEELKAYT-DWTHLSELEEGFLKQKSKLHWMNVGDGN 669
Query: 1890 TKFFHSIIKRNALKRQLSSVSLLDGTQTTSLK-------ELSDAFVNFYKGLFGTYYSTN 2048
+FH K +++ +S+ + G +L+ E F F G ++ +
Sbjct: 670 NSYFH---KAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHGIS 726
Query: 2049 PID-QSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDI 2225
D ++++++ +T++ N+L+ V +I+ +F + +++SPGPDGY+S FFK +W +
Sbjct: 727 VEDLRNLMSYRCSVTDQ--NILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSL 784
Query: 2226 VGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIA 2405
G D I AIQ FF L K +N T + LIPK D + + D+RPI+CCNV+YK I+KI+A
Sbjct: 785 TGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILA 844
Query: 2406 ARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYDTV 2585
RL+ +LPS I Q+AFV R + +N+ LA E++++Y ++ ++PRC +K+DI KA+D+V
Sbjct: 845 NRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSV 904
Query: 2586 SWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLF 2765
W FL L + FP F W+ C+++A+FS+ +NG L G F RGLRQG +SP LF
Sbjct: 905 QWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLF 964
Query: 2766 ILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSE 2945
++CM LS +I+ H N +HP+C ++ ++HL FADDLM+F G S++ +++ E
Sbjct: 965 VICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKE 1024
Query: 2946 FKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNSVHYA 3125
F SGL I+ KS ++ AGV D L+ F +G LPVRYLG+PL +++ + Y+
Sbjct: 1025 FAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYS 1084
Query: 3126 PLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTFL 3305
PL + + I+ WTA SL+YAGRL L+ SV+ + FW+ + LP ++ I LC FL
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFL 1144
Query: 3306 W-----GKKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVH 3470
W K+ I+W IC P EGGLGI+++ NK K +W SLWV W+
Sbjct: 1145 WSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIW 1204
Query: 3471 AFYLKRQSIWDWNPK 3515
F +++ + W N +
Sbjct: 1205 TFIIRKGTFWSANER 1219
Score = 66.6 bits (161), Expect = 9e-08
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Frame = +3
Query: 3624 HKGLISSKIYDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLTYTDINP 3803
+K I+ ++ R H + W VW + PKYSF W+ +RL+T + + +
Sbjct: 1333 NKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQ 1392
Query: 3804 M--CKLCSQQLESAPHLFFTCPITNLLWNRIKAWL---KIHRSMSTLASAIKWIRKDKAD 3968
+ C LC+ E+ HLFF+C T+ +W + L R + L + + +
Sbjct: 1393 LVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCTSNLPRDH 1452
Query: 3969 PILKKARAVAFCCSIYHIWKARNA 4040
L + F SIYHIW+ RNA
Sbjct: 1453 LFLFR---YVFQASIYHIWRERNA 1473
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 483 bits (1242), Expect = e-133
Identities = 304/1022 (29%), Positives = 510/1022 (49%), Gaps = 50/1022 (4%)
Frame = +3
Query: 1122 ITSFVYGLYSVGDRRLLWDDLYNIGHSLID---PWLILGDFNCIKSPDEKLNGAAIN-NY 1289
+ S VY R+ LW++L + SL PW++LGDFN + P E ++N N
Sbjct: 54 VVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNR 113
Query: 1290 DLKDFQDICLTLGLNDVQTTGCFFTWTNNSAWC----RLDRALVNSAWAQLGLQISAHAP 1457
+K F+D L D+ G FTW N SA +LDR LVN +W A
Sbjct: 114 RMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFG 173
Query: 1458 VPGAISDHXXXXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFN-PVWGTAQFMXX 1634
P SDH +PF+F+N +P F+++V W++ V G++ F
Sbjct: 174 EPD-FSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMS 232
Query: 1635 XXXXXXXXXXXXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVI 1814
++FS++ RVKEA + + QN+ DP + + E+++Q+ K +
Sbjct: 233 KKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQR-KWL 291
Query: 1815 SLTKAEKMFLSQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELS 1994
L KAE+ F Q+++ +++ D NT +FH + + + +G + + +
Sbjct: 292 ILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIK 351
Query: 1995 DAFVNFYKGLFGTYYSTNPI---DQSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDD 2165
+ + ++ L G + D ++ C + + L+ DIK+A F+
Sbjct: 352 EHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRC-SHDQKKELAMSFSRQDIKSAFFSFPS 410
Query: 2166 DRSPGPDGYSSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVA 2345
+++ GPDG+ FFK++W ++G +V +A+ EFF+++ LLKQ N T++ LIPK ++ +
Sbjct: 411 NKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMN 470
Query: 2346 DFRPIACCN----VVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIR 2513
DFRPI+C + +YK I +++ RL+ +L +I+P Q+AF+ GR + +N+ LA E+++
Sbjct: 471 DFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQ 530
Query: 2514 NYARKRISPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCIN 2693
Y R+ I PR +KVD++KA+D++ W F+ L +G P+ F+ W+ +C+++ +FS+C+N
Sbjct: 531 GYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVN 590
Query: 2694 GSLKGKFPGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIF 2873
G+ G F RGLRQG+P+SP LF+L ME S L+N + +HP+ L ISHL+F
Sbjct: 591 GNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMF 650
Query: 2874 ADDLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFP 3053
ADD+M+F G S+ + + L +F SGL +N K++++ AG+ + +
Sbjct: 651 ADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTI------- 703
Query: 3054 SGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVEC 3233
A+KL Y PL +++A W+ L++AGR+ LI SV+ G+
Sbjct: 704 --------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIIN 749
Query: 3234 FWLQIFPLPKSVVKRIYMLCRTFLWG-----KKRPPISWHKICMPSDEGGLGIRNVYAWN 3398
FW+ F LPK VKRI LC FLW KK ++W ++C+P +EGG+G+R
Sbjct: 750 FWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLRRF---- 805
Query: 3399 KALLSKNLWNFHLKTDSLWV-KW--------------VHAFYLKRQSI---------WDW 3506
+L+ LW+ K S W W A + Q+ W
Sbjct: 806 -TVLNTTLWDG--KKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLI 862
Query: 3507 NPKKDDSTLLKRINDVKNELLCKFGNQNAVIANLLAFSNHKGLISSKIYDIFRDHGEKNF 3686
+P + D L I+ L C + + + + F+ H G +++ ++ R
Sbjct: 863 SPPRTDQALALLIHLTTIALPCFDSSPDTFVWIVDDFTCH-GFSAARTWEAMRPKKPVKD 921
Query: 3687 WKAAVWKSFIPPKYSFCAWMAFNDRLATINNLTYTDINPM--CKLCSQQLESAPHLFFTC 3860
W +VW PK++F W++ +RL T L + C LCS + ES HL C
Sbjct: 922 WTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYC 981
Query: 3861 PITNLLWNRIKAWLKIHRSM-STLASAIKW--IRKDKADPILKKARAVAFCCSIYHIWKA 4031
+ ++W + L +++ ++ A + W I KA +L+K A A S++H+WK
Sbjct: 982 VFSAVIWKLVFFRLTPSQAIFNSWAELLSWTRINSSKAPSLLRKIAAQA---SVFHLWKQ 1038
Query: 4032 RN 4037
RN
Sbjct: 1039 RN 1040
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 468 bits (1204), Expect = e-128
Identities = 293/904 (32%), Positives = 440/904 (48%), Gaps = 18/904 (1%)
Frame = +3
Query: 1434 LQISAHAPVPGAISDHXXXXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFNPVWG 1613
L S + +P ISDH PFKFFN F+ +V W VWG
Sbjct: 134 LNYSVLSFLPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVSAVWATNVWG 193
Query: 1614 TAQFMXXXXXXXXXXXXXXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVK 1793
+ QF + +L L VK
Sbjct: 194 SKQFQ------------------------------------VWRKLKL----------VK 207
Query: 1794 SQKLKVISLTKAEKMFLSQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQT 1973
+Q K+++ EK+ L +K++ +L DKN+ FF + ++ + ++++++ DG
Sbjct: 208 NQ-FKLLNCNVVEKL-LKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRSDGPDL 265
Query: 1974 TSLKELSDAFVNFYKGLFGTYYSTNPIDQSVINHGPCLTEEHANLLSAPVLPSDIKAAIF 2153
K L + F + DI+A F
Sbjct: 266 A--KSLCNEFTH----------------------------------------DDIRAVFF 283
Query: 2154 NIDDDRSPGPDGYSSAFFKKSWDIVGNDVINA-IQEFFSNAKLLKQINHTSITLIPKTDH 2330
+++ ++SPGPDG++ FF+K+W ++G++V+ A ++EFFS LL ++N T ITL+PK +
Sbjct: 284 SMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVAN 343
Query: 2331 SPSVADFRPIACCNVVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEII 2510
+++DFRPI+CCN YK I K++A RL+ L ++ P+Q+ F+ GR I DNI LAQEII
Sbjct: 344 PTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEII 403
Query: 2511 RNYARKRISPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCI 2690
+Y + PRCT VD+ KA DTV W F+ L P+ I W+ C++SA FS+C+
Sbjct: 404 CDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCV 463
Query: 2691 NGSLKGKFPGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSN-FKFHPRCGELKISHL 2867
NG L G F RGLRQGDP+SP LF++ ME LS I + + S F++H RC +L +SHL
Sbjct: 464 NGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHL 523
Query: 2868 IFADDLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLN 3047
FADDL++F GD SV+ L D S F+ +S L N ++S +F AGV G D++L + N
Sbjct: 524 CFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTN 583
Query: 3048 FPSGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGV 3227
F G+ PVRYLG+PL KL +PL DRI I W L++AGRL LI+SVL +
Sbjct: 584 FSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSI 643
Query: 3228 ECFWLQIFPLPKSVVKRIYMLCRTFLW-----GKKRPPISWHKICMPSDEGGLGIRNVYA 3392
+ +W LPK V+K I R FLW G+ ++W +IC+P EGGLGI++++
Sbjct: 644 QVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHC 703
Query: 3393 WNKALLSKNLWNFHLKTDSLWVKWVHAFYLKRQSIWD--------WNPKKDDSTLLKRIN 3548
WNKAL+ ++WN + + W WV + LK S W+ WN +K LLK
Sbjct: 704 WNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRK----LLK--- 756
Query: 3549 DVKNELLCKFGNQNAVIANLLAFSNHKGLISSKIYDIFRDHGEKNF-WKAAVWKSFIPPK 3725
EL C F N++ G +S +D + G W + + K
Sbjct: 757 --IRELCCSF------FVNIIG----DGRATSLWFDNWHPLGPLTLRWSSNIIGESGLSK 804
Query: 3726 YSFCAWMAFNDRLATINNLTYTD-INPMCKLCSQQLESAPHLFFTCPITNLLWNRIKAWL 3902
+ F + N L + I P +L E+ HLFF C + +W + +
Sbjct: 805 SAMLTPNGFYSTSSAWNTLRPSRFIVPWYRLVWFVAETHNHLFFDCAYSFGIWTHVLSKC 864
Query: 3903 KIHRSMSTLASAIKWIRKD-KADPILKKARAVAFCCSIYHIWKARNAHVFDGDPFSYEAV 4079
+ + + + I W+ + K + + +A +Y IW+ RN F + V
Sbjct: 865 DVSKPLLPWSDFIFWVATNWKGNSLPVVILKLALQAVVYAIWRERNNRRFRNESLPPAVV 924
Query: 4080 FKKI 4091
FK I
Sbjct: 925 FKGI 928
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 452 bits (1162), Expect = e-124
Identities = 270/821 (32%), Positives = 424/821 (51%), Gaps = 93/821 (11%)
Frame = +3
Query: 1857 KCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTY 2036
KC ++ D+N K FH I + + DG TS +++ VN+++ +
Sbjct: 84 KCQ-TDVGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQD----F 138
Query: 2037 YSTNPID------QSVINHGP--CLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGY 2192
T P D + + N P C ++H LL+ V +IK IF++ D+SPGPDGY
Sbjct: 139 LQTIPADYEGMCVEELENLLPFRCSEDDH-RLLTRVVTGEEIKKVIFSMPKDKSPGPDGY 197
Query: 2193 SSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCN 2372
+S F+K SW+I+G++VI AIQ FF+ L K +N T + LIPK + + D+RPI+CCN
Sbjct: 198 TSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCN 257
Query: 2373 VVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTI 2552
V+YKAI+KI+A RL+++LP I Q+AFV R + +N+ LA E++++Y + IS RC +
Sbjct: 258 VLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAM 317
Query: 2553 KVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGL 2732
K+DI KA+D++ WSFL +LA M FP FI W+ C+++ASFS+ +NG L G F RGL
Sbjct: 318 KIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGL 377
Query: 2733 RQGDPMSPGLFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPP 2912
RQG +SP LF++ M+ LSR+++ F +HPRC L ++HL FADDLM+ G
Sbjct: 378 RQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIR 437
Query: 2913 SVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPL 3092
SV ++ L++F GL I K+ ++ AGV + + +F G LPVRYLG+PL
Sbjct: 438 SVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPL 497
Query: 3093 AAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVV 3272
++L + Y+PL D+I I WT+ L++AGRL LI SVL + FW+ F LP+ +
Sbjct: 498 VTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECI 557
Query: 3273 KRIYMLCRTFLWG-----KKRPPISWHKICMPSDEGGLGIRNVYAWNKA--------LLS 3413
I + LW K+ +SW +IC P EGGLG++++ NK LLS
Sbjct: 558 NEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLS 617
Query: 3414 --KNLW------NFHLKTDSLWV--------KWVHAFYLKRQSI---------------- 3497
+LW N LK +S W W+ LK + +
Sbjct: 618 CQDSLWVKWTRMNL-LKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTS 676
Query: 3498 -----WD----------------------------WNPKKDDSTLLKRINDVKNELLCKF 3578
W W+ ++ ++ +N+ + LL K+
Sbjct: 677 FWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKY 736
Query: 3579 GNQNAVIANLLAFSNHKGLISSKI-----YDIFRDHGEKNFWKAAVWKSFIPPKYSFCAW 3743
++N + + + + + + ++ ++ R + W VW + PK+SFCAW
Sbjct: 737 QHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAW 796
Query: 3744 MAFNDRLATINNL-TYTDINPM-CKLCSQQLESAPHLFFTCPITNLLWNRIKAWLKIHRS 3917
+A +RL+T + + T+ + P C CS +E+ HLFF C ++ +W I + R
Sbjct: 797 LAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRF 856
Query: 3918 MSTLASAIKWIRKDKADPILKKARAVAFCCSIYHIWKARNA 4040
+ ++ + +I + D I F SI+ IW+ RN+
Sbjct: 857 STKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRERNS 897
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 449 bits (1155), Expect = e-123
Identities = 326/1114 (29%), Positives = 527/1114 (47%), Gaps = 20/1114 (1%)
Frame = +3
Query: 822 GFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKFPGWLYSNNFHE 1001
G + + + ++I +NL + C LET + + N ++ + PGW +N+
Sbjct: 53 GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENA------NSVLASTLPGWRMDSNYCC 106
Query: 1002 YRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRRLLWDD 1181
GR+ ++W+PS + V + + Q++ C I +F +FVYG S DRR LW+D
Sbjct: 107 SELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWED 165
Query: 1182 LYNIGHSL---IDPWLILGDFNCIKSPDE--KLNGAAINNYDLKDFQDICLTLGLNDVQT 1346
+ + + + PWL+LGDFN I + E +N + +N ++D Q L+D+ +
Sbjct: 166 ILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPS 225
Query: 1347 TGCFFTWTN----NSAWCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXXXXXXXX 1514
G FFTW+N N +LDRAL N W + A PG SDH
Sbjct: 226 RGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQP 284
Query: 1515 XXXXKPFKFFNMWTSHPSFLNVVQNAWF-NPVWGTAQFMXXXXXXXXXXXXXXXXSQHFS 1691
K FK+F+ +SHPS+L + AW N + G+ F FS
Sbjct: 285 PPSKKSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFS 344
Query: 1692 HISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFL 1871
+I R ++ L+ +Q +L P ++ E ++K + I A + F QK++ +L
Sbjct: 345 NIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARK-QWIFFAAALESFFRQKSRIRWL 403
Query: 1872 NLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYSTNP 2051
+ D NT+FFH + + + + DG + ++ ++ + +Y L G S N
Sbjct: 404 HEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIP-SENV 462
Query: 2052 IDQSVINHGPCLTEEHANLLSAPV--LPSD--IKAAIFNIDDDRSPGPDGYSSAFFKKSW 2219
SV L + L++ + +PS+ I +F++ +++PGPDG+ FF ++W
Sbjct: 463 TPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAW 522
Query: 2220 DIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKI 2399
IV + V+ AI+EFF + L + N T+ITLIPK + + FRP+ACC +YK IT+I
Sbjct: 523 AIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRI 582
Query: 2400 IAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYD 2579
I+ RL+ + + Q F+ GR + +N+ LA E++ N+ + R ++VDI KAYD
Sbjct: 583 ISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYD 642
Query: 2580 TVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPG 2759
V+W FL IL + P +FI W+ C++SAS+S+ NG L G F G++G+RQGDPMS
Sbjct: 643 NVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSH 702
Query: 2760 LFILCMEYLSRLINIKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCL 2939
LF+L M+ LS+ +++ + F HP C I+HL FADD+++F+ G S+ ++ L
Sbjct: 703 LFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTIL 762
Query: 2940 SEFKKVSGLDINSAKSNVFTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNSVH 3119
+F++ SGL IN K+ + G +L + L GSLPVRYLGVPL +QK+
Sbjct: 763 DDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQD 822
Query: 3120 YAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRT 3299
Y PL DRI + ++ R L LQ + W ++ L R +++C
Sbjct: 823 YQPLVDRI-------NSRFTSWTARHLSFAGRLQLLNWIWRKLCKLRPFA--RPFIICEV 873
Query: 3300 FLWGKKRPPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVHAFY 3479
G WH +D G L ++ LL+ N ++ D+L
Sbjct: 874 ---GSGVTASFWHDNW--TDHGPL--LHLTGPAGPLLAGLPLNSVVR-DAL--------- 916
Query: 3480 LKRQSIWDWNPKKDDS---TLLKRINDVKNELL-CKFGNQNAVIANLLAFSNHKGLISSK 3647
R W + + + TLL+R+ L+ C + A SN ++
Sbjct: 917 --RDDTWRISSSRSRNPVITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNR--FSTAD 972
Query: 3648 IYDIFRDHGEKNFWKAAVWKSFIPPKYSFCAWMAFNDRLATINNLTYT--DINPMCKLCS 3821
+ + W AVW PK +F W+ ++RL T + L I P C LC+
Sbjct: 973 TWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCN 1032
Query: 3822 QQLESAPHLFFTCPITNLLWNRIKAWLKIHRSMSTLASAIKWIRKDKADPILKKARAVAF 4001
ES HLFF C ++ +W+ L ++ + + W D + + F
Sbjct: 1033 DLDESREHLFFRCQFSSEIWSFFMRALNLNPPPQFM-HCLLWTLTASRDRNITLITKLLF 1091
Query: 4002 CCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHV 4103
S+Y IW+ RN + + K+IQ V
Sbjct: 1092 HASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIV 1125
>gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]
Length = 2215
Score = 442 bits (1136), Expect = e-121
Identities = 274/854 (32%), Positives = 428/854 (50%), Gaps = 8/854 (0%)
Frame = +3
Query: 1008 NGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRRLLWDDLY 1187
N + + +++ ++L Q +H ++ T+FVY + +R LW+ L
Sbjct: 909 NSQKIWLFHSVEFICEVLLDHPQCLHVRVTIPWLDLPIFTTFVYAKCTRSERTPLWNCLR 968
Query: 1188 NIGHSLIDPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICLTLGLNDVQTTGCFFTW 1367
N+ + PW++ GDFN I +E+L GA + ++DF + L GL D G FTW
Sbjct: 969 NLAADMEGPWIVGGDFNIILKREERLYGADPHEGSIEDFASVLLDCGLLDGGFEGNPFTW 1028
Query: 1368 TNNSAWCRLDRALVNSAWA-QLGLQISAHAPVPGAISDHXXXXXXXXXXXXXXXKPFKFF 1544
TNN + RLDR + N W + + H G SDH F+F
Sbjct: 1029 TNNRMFQRLDRMVYNQQWINKFPITRIQHLNRDG--SDHCPLLLSCSNSSEKAPSSFRFL 1086
Query: 1545 NMWTSHPSFLNVVQNAWFNPVWGTAQFMXXXXXXXXXXXXXXXXSQHFSHISSRVKEAKD 1724
+ W H +F V+ W P+ G+ F I S +KEA+
Sbjct: 1087 HAWALHHNFNASVEGNWNLPINGSGLMAFWSKQKRLKQHLKWWNKTVFGDIFSNIKEAEK 1146
Query: 1725 TLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFLNLSDKNTKFFH 1904
++ + LH ++ ++ E++F QK+ ++ ++NTKFFH
Sbjct: 1147 RVEECEI-LHQQEQTIGSRIQLNKSYAQLNKQLSMEEIFWKQKSGVKWVVEGERNTKFFH 1205
Query: 1905 SIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYSTNPIDQSVINHGPC 2084
+++ ++ + + DG ++L + ++F+ L + QS +
Sbjct: 1206 MRMQKKRIRSHIFKIQEQDGNWIEDPEQLQQSAIDFFSSLLKAESCDDTRFQSSLCPSII 1265
Query: 2085 LTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDIVGNDVINAIQEFF 2264
++ L + P L ++K A+F ID + + GPDG+SS F+++ WDI+ +D+ A++EFF
Sbjct: 1266 SDTDNGFLCAEPTL-QEVKEAVFGIDPESAAGPDGFSSHFYQQCWDIIAHDLFEAVKEFF 1324
Query: 2265 SNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIAARLEKVLPSLINP 2444
A + + + T++ LIPKT + ++FRPI+ C V+ K ITKI+A RL K+LPS+I
Sbjct: 1325 HGADIPQGMTSTTLVLIPKTTSASKWSEFRPISLCTVMNKIITKILANRLAKILPSIITE 1384
Query: 2445 AQAAFVGGRNITDNIFLAQEIIRNYARKRISPRCTIKVDIKKAYDTVSWSFLHGILAGMG 2624
Q+ FVGGR I+DNI LAQE+I +K +K+D+ KAYD + WSFL +L +G
Sbjct: 1385 NQSGFVGGRLISDNILLAQELIGKLDQKNRGGNVALKLDMMKAYDRLDWSFLFKVLQHLG 1444
Query: 2625 FPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLFILCMEYLSRLIN- 2801
F +I + +C+++ FSL +NG G F ERGLRQGD +SP LFIL EYL+R +N
Sbjct: 1445 FNAQWIGMIQKCISNCWFSLLLNGRTVGYFKSERGLRQGDSISPQLFILAAEYLARGLNA 1504
Query: 2802 IKTSHSNFKFHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSA 2981
+ + + + C L +SHL FADD+++FA G +++ +M L E++K+SG IN
Sbjct: 1505 LYDQYPSLHYSSGC-SLSVSHLAFADDVIIFANGSKSALQKIMAFLQEYEKLSGQRINPQ 1563
Query: 2982 KSNVFT-AGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYIN 3158
KS V T + +L F LP+ YLG PL + + L +I I
Sbjct: 1564 KSCVVTHTNMASSRRQIILQATGFSHRPLPITYLGAPLYKGHKKVMLFNDLVAKIEERIT 1623
Query: 3159 KWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTFLWG-----KKRP 3323
W +L+ GR+ L++S L + + LQ+ P V++RI L FLWG K+
Sbjct: 1624 GWENKTLSPGGRITLLRSTLSSLPIYLLQVLKPPVIVLERINRLLNNFLWGGSTASKRIH 1683
Query: 3324 PISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWVHAFYLKRQSIWD 3503
SW KI +P EGGL IRNV +A K W F T+SLW +++ A Y Q D
Sbjct: 1684 WASWGKIALPIAEGGLDIRNVEDVCEAFSMKLWWRFR-TTNSLWTQFMRAKYCGGQLPTD 1742
Query: 3504 WNPKKDDSTLLKRI 3545
PK DS KR+
Sbjct: 1743 VQPKLHDSQTWKRM 1756
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 439 bits (1130), Expect = e-120
Identities = 316/1141 (27%), Positives = 550/1141 (48%), Gaps = 40/1141 (3%)
Frame = +3
Query: 822 GFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDICFDSALCNFIVKTKFPGWLYSNNFHE 1001
G P+ +QL K ++L L+ET + ++ + N FP + +
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEV-----ISNLASVLGFPNVITQPP--Q 443
Query: 1002 YRNGRMLLIWNPSSVHVDILFISSQLIHCKIICNISHATFITSFVYGLYSVGDRRLLWDD 1181
+G + L+W SV + L+ + H + +I++ F S VYG +R LW
Sbjct: 444 GHSGGLALLWK-DSVRLSNLYQDDR--HIDVHISINNINFYLSRVYGHPCQSERHSLWTH 500
Query: 1182 LYNIGHSLIDPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDICLTLGLNDVQTTGCFF 1361
N+ + DPW+++GDFN I S +EK+ G + + + F+++ T L D+++ G F
Sbjct: 501 FENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRF 560
Query: 1362 TWT----NNSAWCRLDRALVNSAWAQLGLQISAHAPVPGAISDHXXXXXXXXXXXXXXXK 1529
+W +++ C LDRA +NS A L + + SDH +
Sbjct: 561 SWVGERHSHTVKCCLDRAFINSEGAFL-FPFAELEFLEFTGSDHKPLFLSLEKTETRKMR 619
Query: 1530 PFKFFNMWTSHPSFLNVVQNAWFNPVWGTAQFMXXXXXXXXXXXXXXXXSQHFSHISSRV 1709
PF+F P F V+ W + G + + +H S+++SR+
Sbjct: 620 PFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKL---KHKSNLNSRI 676
Query: 1710 KEAKDTLDSLQNQLH--LDPLNSSLSFEVKSQKLKVISLTKAEKMFLSQKAKCSFLNLSD 1883
+ ++ LQ L + +N + + + ++ + E+ + QK++ ++ D
Sbjct: 677 R-----INQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGD 731
Query: 1884 KNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNFYKGLFGTYYSTNPIDQS 2063
+NT+FFH+ K +L ++ +G KE+ F F Y +N S
Sbjct: 732 RNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEF----FTKVYESNGRPVS 787
Query: 2064 VINHG---PCLTEEHANLLSAPVLPSDIKAAIFNIDDDRSPGPDGYSSAFFKKSWDIVGN 2234
+I+ P +TE+ + L+ + +I AI +I DD++PGPDG ++ F+K W+IVG
Sbjct: 788 IIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGP 847
Query: 2235 DVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADFRPIACCNVVYKAITKIIAARL 2414
DVI ++ FF + + + INHT+I +IPK + +++D+RPIA CNV+YK I+K + RL
Sbjct: 848 DVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERL 907
Query: 2415 EKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNY-ARKRISPR-CTIKVDIKKAYDTVS 2588
+ L ++++ +QAAF+ GR + DN+ +A E++ + RKR+S +K D+ KAYD V
Sbjct: 908 KGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVE 967
Query: 2589 WSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKGKFPGERGLRQGDPMSPGLFI 2768
W+FL + GF +I W+M V S ++S+ +NG G +RG+RQGDP+SP LFI
Sbjct: 968 WNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFI 1027
Query: 2769 LCMEYLSRLINIKTSHSNFK-FHPRCGELKISHLIFADDLMLFAKGDPPSVKILMDCLSE 2945
LC + L+ LI + + + + G ++HL FADD + F + + + + L D
Sbjct: 1028 LCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDV 1087
Query: 2946 FKKVSGLDINSAKSNV-FTAGVFGPDLDALLNLLNFPSGSLPVRYLGVPLAAQKLNSVHY 3122
++ SG IN +KS + F + V G + L N+L S +YLG+P + +
Sbjct: 1088 YEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMF 1147
Query: 3123 APLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVECFWLQIFPLPKSVVKRIYMLCRTF 3302
+ +R+ + W+A L+ AG+ +++KSV + + + F LP ++V I L F
Sbjct: 1148 NYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNF 1207
Query: 3303 LW---GKKR--PPISWHKICMPSDEGGLGIRNVYAWNKALLSKNLWNFHLKTDSLWVKWV 3467
W KKR P I+W ++ EGGLG R++ +N ALL+K +W +SL+ + +
Sbjct: 1208 WWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIM 1267
Query: 3468 HAFYLKRQSIWDWNPKKDDS----TLLKRINDVKNELLCKFGNQNA---------VIANL 3608
A Y + SI D ++ S ++L ++ +K G+ +I+ L
Sbjct: 1268 KARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTGSYRYWNAHLISQL 1327
Query: 3609 LAFSNHKGLISSKIYDIFRDHGEKNFWKAA------VWKSFIPPKYSFCAWMAFNDRLAT 3770
++ +H+ +++ + I H +K W + +WK I PK + W + L T
Sbjct: 1328 VSPDDHRFVMNHHLSRIV--HQDKLVWNYSSSGDYTLWKLPIIPKIKYMLWRTISKALPT 1385
Query: 3771 INNLTY--TDINPMCKLCSQQLESAPHLFFTCPITNLLWNRIK-AWLKIHRSMSTLASAI 3941
+ L DI+P C C + E+ H+ FTCP +W WL H I
Sbjct: 1386 RSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENI 1445
Query: 3942 KWIRKDKADPILKKARAVAFCCSIYHIWKARNAHVFDGDPFSYEAVFKKIQFHVYQVIYS 4121
++ ++ L + +A I+ +WKARN VF+ S V + + V + + S
Sbjct: 1446 SFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQS 1505
Query: 4122 I 4124
+
Sbjct: 1506 V 1506
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 435 bits (1119), Expect = e-119
Identities = 294/946 (31%), Positives = 450/946 (47%), Gaps = 42/946 (4%)
Frame = +3
Query: 795 MKIAVWNVRGFKNPIKHNQLLAFIKEHNLNILCLLETKLEDDIC-FDSALCNFIVKTKFP 971
M IA WNVRG + F K +N+ IL L ETK + + F+ P
Sbjct: 1 MSIAFWNVRGGCRKNVMEECSDFCKNNNIKILMLCETKSQSPPSQLAVSAAGFLHHDSIP 60
Query: 972 GWLYSNNFHEYRNGRMLLIW-----NPSSVHVDILFISSQLIHCKIICNISHATFITSFV 1136
YS G + L W NP S+ V ++ S + I C I + F+ F+
Sbjct: 61 AMGYS--------GGLWLFWRDCILNPFSLVV--IYKSVRFIACSINLLNQNLQFVAIFI 110
Query: 1137 YGLYSVGDRRLLWDDLYNIGHSLIDPWLILGDFNCIKSPDEKLNGAAINNYDLKDFQDIC 1316
Y + WD+L SL P++ILGDFN I SP +KL GA ++ Q++
Sbjct: 111 YAPAQKEFKSSFWDELIAYVSSLSFPFIILGDFNEINSPSDKLGGAPFSSSRAYYMQNLF 170
Query: 1317 LTLGLNDVQTTGCFFTWTN-----NSAWCRLDRALVNSAWAQLGLQISAHAPVPGAI--- 1472
+ ++ TG FTW N+ RLDR + +++W L + HA + I
Sbjct: 171 SQVDCTEISFTGQIFTWRKKKDGPNNIHERLDRGVASTSW----LMLFPHAFLKHHIFTS 226
Query: 1473 SDHXXXXXXXXXXXXXXXKPFKFFNMWTSHPSFLNVVQNAWFNPVWGTAQFMXXXXXXXX 1652
SDH PF+F MW + + ++V+ W +G+ F
Sbjct: 227 SDHCQISLEYLANNKSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLV 286
Query: 1653 XXXXXXXXSQHFSHISSRVKEAKDTLDSLQNQLHLDPLNSSLSFEVKSQKLKVISLTKAE 1832
F +I ++++ + L+ +Q L +D N+SL + + K L +
Sbjct: 287 KINSKEWNKTQFGNIFRQLRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYN 346
Query: 1833 KMFLSQKAKCSFLNLSDKNTKFFHSIIKRNALKRQLSSVSLLDGTQTTSLKELSDAFVNF 2012
+ QK K F+ L D N+KF+H+ + Q+ + D Q + +L + +
Sbjct: 347 TTYWKQKCKSDFMVLGDTNSKFYHTHASIRKYRNQIKEF-IPDNAQPITQPDLIEKEITL 405
Query: 2013 YKGLFGTYYSTNP-------IDQSVINHGPCLTEEHANLLSAPVLPSDIKAAIFNIDDDR 2171
F + +NP +D ++++ P ++E L++ V P +IK A+F++ D+
Sbjct: 406 ---AFKKRFISNPACKFNQNVDFNLLS--PIVSEADNAYLTSAVSPEEIKNAVFDLAPDK 460
Query: 2172 SPGPDGYSSAFFKKSWDIVGNDVINAIQEFFSNAKLLKQINHTSITLIPKTDHSPSVADF 2351
SPGPDG+ FF+K W ++G V A+Q FF + +LK++NHT + LIPK D + F
Sbjct: 461 SPGPDGFPPYFFQKYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHF 520
Query: 2352 RPIACCNVVYKAITKIIAARLEKVLPSLINPAQAAFVGGRNITDNIFLAQEIIRNYARKR 2531
RPI+ C+ +YK I+KII RL+ L +I+P Q AF+ R I DNI +A E+ ++ K
Sbjct: 521 RPISLCSTIYKVISKIITNRLKITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKNKT 580
Query: 2532 -ISPRCTIKVDIKKAYDTVSWSFLHGILAGMGFPNLFISWVMECVTSASFSLCINGSLKG 2708
IK+D++KAYD + W +++ + MGF ++I W+ C++SASFS+ +NG
Sbjct: 581 GRGGWIAIKLDMEKAYDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSASFSVLVNGIPGE 640
Query: 2709 KFPGERGLRQGDPMSPGLFILCMEYLSRLINIKTSHSNFKF---HPRCGELKISHLIFAD 2879
+F RG+RQGDP+SP LFILC E L+R + K H K +I L FAD
Sbjct: 641 RFFPSRGIRQGDPLSPYLFILCAELLAREFS-KACHEPGKLIGVPIGRTRTRIPFLTFAD 699
Query: 2880 DLMLFAKGDPPSVKILMDCLSEFKKVSGLDINSAKSNVFTAGVFGPDLDAL--LNLLNFP 3053
D M+FAK S + L ++ +SG +N KS F D+D + ++L
Sbjct: 700 DTMIFAKATEASCHKIRQILDKYCLMSGQLVNYHKS-AFQCSPNVRDIDKVNFASILGMQ 758
Query: 3054 SGSLPVRYLGVPLAAQKLNSVHYAPLYDRIAAYINKWTANSLTYAGRLLLIKSVLQGVEC 3233
S YLG P+ ++ +A + + + KW ANSL+ AGR +LI+S L
Sbjct: 759 ESSELGDYLGCPIINSRVTKETFAGVISKTVQQLPKWKANSLSQAGRTVLIQSNLASKAS 818
Query: 3234 FWLQIFPLPKSVVKRIYMLCRTFLWGKKRPP-----ISWHKICMPSDEGGLGIRNVYAWN 3398
F +Q F LPK V+ + R F W K I W+KIC P GG+G R N
Sbjct: 819 FQMQSFTLPKKVLTTLDTTYRNFFWNKDPAAKSANFIGWNKICQPKSVGGVGFRKAEVTN 878
Query: 3399 KALLSKNLWNFHLKTDSLWVKWVHAFYLKRQSI----------WDW 3506
AL K LW + D++WVK V YLK Q++ W W
Sbjct: 879 IALQMKLLWKIMVSKDNIWVKLVTQKYLKEQNLLVCKIPSNASWQW 924