BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00012390
         (2088 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   873   0.0  
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   870   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   869   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              858   0.0  
gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [...   845   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   842   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   842   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   839   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   835   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   832   0.0  
gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus pe...   829   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   823   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   823   0.0  
gb|EOY11113.1| Pseudouridine synthase family protein, putative i...   819   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   811   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   798   0.0  
ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synt...   788   0.0  
ref|XP_004494684.1| PREDICTED: multisubstrate pseudouridine synt...   778   0.0  
ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Caps...   773   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   771   0.0  

>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  873 bits (2256), Expect = 0.0
 Identities = 450/682 (65%), Positives = 535/682 (78%), Gaps = 8/682 (1%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGI CYIS+LPGFRGILKQRYSDFIVNEVDLD NVVHLT LEAP E +E K   I+D L
Sbjct: 8    DVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKDVNISDQL 67

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
            ++ Y +E+ESFR+LAG+SD +KLK F+D++  G + +DESIVLSPSSDKSHRTA+HNFFK
Sbjct: 68   NRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRTAIHNFFK 127

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            ERL FLVTDT+DG +  SKCVRVRL                      YD RGSDSWP  +
Sbjct: 128  ERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGSDSWPGHL 187

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHL+KENKDTQEAL ++ KMLG+Q RSFGFAGTKDKR+VSTQRVTVFKQ+A+KLA
Sbjct: 188  GKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFKQQASKLA 247

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALN+RLIGIKVG+FC+V EGL+LGQL GNRFTITLR + AE+EDII+ASA AL K+GFIN
Sbjct: 248  ALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVALGKHGFIN 307

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGSSS+ THLIGAALLRGEWKAAV +ILDPREGEK+    +REYYKESGD++GT
Sbjct: 308  YFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYYKESGDIDGT 367

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LRQLPR++VAE+AIL C ++ PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR+QK+
Sbjct: 368  LRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKH 427

Query: 1261 GVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMSVK 1440
            G  QVVLGDLVY KE+   KE  S     ED + N+     +LD+IS TDL E +++ VK
Sbjct: 428  GFDQVVLGDLVYSKEEYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPEERNIPVK 485

Query: 1441 AICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSL 1620
             I +ED+ +  Y IDD++LPLPGSR+ YP NDIGE+Y DLA+KD ISLTE+AH  KEFS+
Sbjct: 486  VINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISLTETAHKIKEFSI 545

Query: 1621 TNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKEQIKC 1800
            TNMTGAYRRVFQKPKDFEWELL+Y D  IPLAETD+D+I  ++S  + VR+ D     K 
Sbjct: 546  TNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVI--ANSVKSKVREEDPTNGSK- 602

Query: 1801 QADCDNEIELVAG--------TGETKSDIQIEEESLAAASKTQESEMALKLSFTLPASCY 1956
            +   D+    V G          +  ++  ++ E   +    +ES+MALKLSFTLPASCY
Sbjct: 603  ELPADSSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSFTLPASCY 662

Query: 1957 ATMAIRELLKTSTSVAFHKALN 2022
            ATMA+RELLKTSTSVAFHK+LN
Sbjct: 663  ATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  870 bits (2249), Expect = 0.0
 Identities = 449/685 (65%), Positives = 520/685 (75%), Gaps = 11/685 (1%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGI  YIS LPGFRGILKQRY DFIVNEVD DGNVVHLTSL+AP E+ E+ + KI+D  
Sbjct: 8    DVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNETKISDQS 67

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
            +K Y+SE+E FR+L GDSDVE LK  +DQ+  G+      IVLS SSDKSHRTAVHNFFK
Sbjct: 68   NKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTAVHNFFK 127

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            E L FLVTDT+DGPD+ SKC+RVRL                     P+D RGSD+W + +
Sbjct: 128  ENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSDNWSEHV 187

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHLYKENKDTQEA+GL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ AN+LA
Sbjct: 188  GKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHANRLA 247

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALNERLIGIKVG+FC+V EGLVLGQL GNRFTITLR + A++E+ I+ASA AL + GFIN
Sbjct: 248  ALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADALGRLGFIN 307

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGS S+ THLIGAALLRGEW+ AV +ILDPREGE+D  RK REYYKES D+EGT
Sbjct: 308  YFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKESDDIEGT 367

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LRQ PRH+VAERAIL C +K PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR+Q Y
Sbjct: 368  LRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQNY 427

Query: 1261 GVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMSVK 1440
            G  QVVLGDLVYCK    +K     +  ++DD  +D     H D+IS TDL E ++  VK
Sbjct: 428  GTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPEERNDPVK 487

Query: 1441 AICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSL 1620
            A+  ED++   YTIDD+VLPLPGSR  YP NDI ++YHD AKKD ISLTESAH+ KEFS+
Sbjct: 488  ALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAHSVKEFSI 547

Query: 1621 TNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFV-----RDSDEK 1785
            TNMTG +RRVFQKP DFEWELL Y + NIPLAETDWD I+K S PS  +     R+ +EK
Sbjct: 548  TNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITK-SKPSNIIGGEDSRNGNEK 606

Query: 1786 EQ----IKCQADCDNEIELVAGTGETK--SDIQIEEESLAAASKTQESEMALKLSFTLPA 1947
            E     +K     ++ + L     E    ++I + +      S   E++ ALKLSFTLPA
Sbjct: 607  ENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEAQRALKLSFTLPA 666

Query: 1948 SCYATMAIRELLKTSTSVAFHKALN 2022
            SCYATMAIRELLKTSTSVAF K LN
Sbjct: 667  SCYATMAIRELLKTSTSVAFQKTLN 691


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  869 bits (2245), Expect = 0.0
 Identities = 449/679 (66%), Positives = 533/679 (78%), Gaps = 5/679 (0%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGI CYIS+LPGFRGILKQRYSDFIVNEVDLD NVVHL SLEAP E +E K   I+D L
Sbjct: 8    DVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKDVNISDQL 67

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
            ++ Y +E+ESFR+LAG+SD +KLK F+D++  G + +DESIVLSPSSDKSHRT +HNFFK
Sbjct: 68   NRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRTEIHNFFK 127

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            ERL FLVTDT+DG +  SKCVRVRL                      YD RGSDSWP  +
Sbjct: 128  ERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGSDSWPGHL 187

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHL+KENKDTQEAL ++ KMLG+Q RSFGFAGTKDKR+VSTQRVTVFKQ+A+KLA
Sbjct: 188  GKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFKQQASKLA 247

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALN+RLIGIKVG+FC+V EGL+LGQL GNRFTITLR + AE+EDII+ASA AL K+GFIN
Sbjct: 248  ALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVALGKHGFIN 307

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGSSS+ THLIGAALLRGEWKAAV +ILDPREGEK+    +REYYKESGD++GT
Sbjct: 308  YFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTVREYYKESGDIDGT 367

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LRQLPR++VAE+AIL   ++ PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR+QK+
Sbjct: 368  LRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKH 427

Query: 1261 GVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMSVK 1440
            G  QVVLGDLVY KE    KE  S     ED + N+     +LD+IS TDL E +++ VK
Sbjct: 428  GFDQVVLGDLVYSKEDYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPEERNIPVK 485

Query: 1441 AICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSL 1620
             I +ED+ +  YTIDD++LPL GSR+ YP NDIGE+Y DLA+KDGISLTE+AH  KEFS+
Sbjct: 486  VINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSI 545

Query: 1621 TNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTF--VRDSDEKEQI 1794
            TNMTGAYRRVFQKPKDFEWELL+Y D  IPLAETD+D+I+KS        V  +  KE  
Sbjct: 546  TNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSKVIEEVPSNGSKELP 605

Query: 1795 KCQADCDNEIELVAG--TGET-KSDIQIEEESLAAASKTQESEMALKLSFTLPASCYATM 1965
               +      ++++G    ET  ++  ++ E   +    +ES+MALKLSFTLPASCYATM
Sbjct: 606  ADSSAISVGGDMLSGKVCEETINNEAGMQSEKSQSGGNAEESQMALKLSFTLPASCYATM 665

Query: 1966 AIRELLKTSTSVAFHKALN 2022
            A+RELLKTSTSVAFHK+LN
Sbjct: 666  AVRELLKTSTSVAFHKSLN 684


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  858 bits (2217), Expect = 0.0
 Identities = 446/685 (65%), Positives = 518/685 (75%), Gaps = 11/685 (1%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGI  YIS LPGFRGILKQRY DFIVNEVD DGNVVHLTSL+AP E+ E+ + KI+D  
Sbjct: 8    DVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNETKISDQS 67

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
            +K Y+SE+E FR+L GDSDVE LK  +DQ+  G+      IVLS SSDKSHRTAVHNFFK
Sbjct: 68   NKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTAVHNFFK 127

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            E L FLVTDT+DGPD+ SKC+RVRL                     P+D RGSD+W + +
Sbjct: 128  ENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSDNWSEHV 187

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHLYKENKDTQEA+GL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ AN+LA
Sbjct: 188  GKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHANRLA 247

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALNERLIGIKVG+FC+V EGLVLGQL GNRFTITLR + A++E+ I+ASA AL + GFIN
Sbjct: 248  ALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADALGRLGFIN 307

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGS S+ THLIGAALLRGEW+ AV +ILDPREG+  +  K REYYKES D+EGT
Sbjct: 308  YFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGDI-LLLKAREYYKESDDIEGT 366

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LRQ PRH+VAERAIL C +K PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR+Q Y
Sbjct: 367  LRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQNY 426

Query: 1261 GVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMSVK 1440
            G  QVVLGDLVYCK    +K     +  ++DD  +D     H D+IS TDL E ++  VK
Sbjct: 427  GTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPEERNDPVK 486

Query: 1441 AICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSL 1620
            A+  ED++   YTIDD+VLPLPGSR  YP NDI ++YHD AKKD ISLTESAH+ KEFS+
Sbjct: 487  ALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAHSVKEFSI 546

Query: 1621 TNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFV-----RDSDEK 1785
            TNMTG +RRVFQKP DFEWELL Y + NIPLAETDWD I+K S PS  +     R+ +EK
Sbjct: 547  TNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITK-SKPSNIIGGEDSRNGNEK 605

Query: 1786 EQ----IKCQADCDNEIELVAGTGETK--SDIQIEEESLAAASKTQESEMALKLSFTLPA 1947
            E     +K     ++ + L     E    ++I + +      S   E++ ALKLSFTLPA
Sbjct: 606  ENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEAQRALKLSFTLPA 665

Query: 1948 SCYATMAIRELLKTSTSVAFHKALN 2022
            SCYATMAIRELLKTSTSVAF K LN
Sbjct: 666  SCYATMAIRELLKTSTSVAFQKTLN 690


>gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  845 bits (2182), Expect = 0.0
 Identities = 437/686 (63%), Positives = 519/686 (75%), Gaps = 12/686 (1%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGILC+ISHLPGFRGILKQRYSDFIVNEVD +GNVVHLTSL+AP E  +E + K  D L
Sbjct: 50   DVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGETKTPDQL 109

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
            +K Y+SE+  FR+LAGD+D ++L+ F++QI  G   +   IVLSP SDKSHRTA+HNFFK
Sbjct: 110  NKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSHRTAMHNFFK 169

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            E L FLVTDTVDGPDS SKC+RVRL                     PYD RGS  WP+ +
Sbjct: 170  ENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDK-PYDSRGSSHWPEHL 228

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHLYKENKDTQEALGL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ A++LA
Sbjct: 229  GKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLA 288

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALNERLIGIKVG+FCYV +  +LGQL GNRFTI LR + A++E+ I+AS  +L ++GFIN
Sbjct: 289  ALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETIKASVESLGRHGFIN 348

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGS SI TH IGA LLRGEW+AA   ILDPREGE+D   K REYYKE+GD+EGT
Sbjct: 349  YFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGERDFVSKAREYYKETGDIEGT 408

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LRQLPRH+VAERA+L C +KCPGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR++KY
Sbjct: 409  LRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKY 468

Query: 1261 GVHQVVLGDLVYCK--EQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMS 1434
            G ++VVLGDLVYCK  + E  K + S H   ED++  D      LD+IS TDL E K+  
Sbjct: 469  GSNEVVLGDLVYCKGNDAEKVKVVPSEH---EDNNFEDAYDCSQLDEISGTDLPEGKNNL 525

Query: 1435 VKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEF 1614
            VKAI   DI    YTI+D+VLP+PGSRI YP+NDI  +YHD+AKKDGISLTES HN KEF
Sbjct: 526  VKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEF 585

Query: 1615 SLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKS--------SSPSTFVR 1770
            S+T+MTG+YRRVFQKP DFEWELL+Y D +I L+ETD D I+K+          P+    
Sbjct: 586  SITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKPVNLVKEEKPTDGTE 645

Query: 1771 DSDEKEQIKCQADCDNEIELVAGTGETKSDIQIEEESLAA--ASKTQESEMALKLSFTLP 1944
              D  + ++     +++ +   G  E +   + E   + +   S +  ++ ALKL+FTLP
Sbjct: 646  GQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSLPESNSLGTQKALKLAFTLP 705

Query: 1945 ASCYATMAIRELLKTSTSVAFHKALN 2022
            ASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 706  ASCYATMAIRELLKTSTSVAFHKTLN 731


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  842 bits (2175), Expect = 0.0
 Identities = 432/676 (63%), Positives = 513/676 (75%), Gaps = 9/676 (1%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGI CYIS+LPGFRGILKQRYSDFIVNEVD DGNVVHLTSL+AP ET EE + +  D  
Sbjct: 67   DVGIFCYISNLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPETREETRTETIDAG 126

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
             K Y+SE+ESFR LAGDSD E L+  ++QI  G       IVLSPSSDKSHRT +HNFFK
Sbjct: 127  TKSYTSEIESFRCLAGDSDAESLEALINQINSGGGEEVSPIVLSPSSDKSHRTEIHNFFK 186

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            +   FLVTDTVDGPD+ SKC+RVRL                     P+D RGSD WP+ +
Sbjct: 187  KNFKFLVTDTVDGPDASSKCIRVRLNSGRHNNHGRNSKKRKERGDKPFDRRGSDDWPEHV 246

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHLYKENKD+QEALGL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRA++LA
Sbjct: 247  GKFLRFHLYKENKDSQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLA 306

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALN+RLIGI+VG+FCYV E LVLGQL GNRFT+TLR + A++E+ I+ASA+AL + GFIN
Sbjct: 307  ALNDRLIGIQVGDFCYVKEELVLGQLSGNRFTVTLRGVVADSEETIKASASALGRRGFIN 366

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGE--KDVTRKIREYYKESGDVE 1074
            YFGLQRFGS S+ T+LIGA L RGEWK AV MILDPREG+   DV  K REYYKE+ D++
Sbjct: 367  YFGLQRFGSGSVPTYLIGAMLFRGEWKDAVHMILDPREGDILLDVITKAREYYKETNDID 426

Query: 1075 GTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQ 1254
            GTLRQLPRH+VAE AIL C +KCPGNYLQAL AIPRTLRMM+VHSYQSYLWNHAAS R+Q
Sbjct: 427  GTLRQLPRHLVAENAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASTRVQ 486

Query: 1255 KYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMS 1434
            KYG  QVV+GDLV+CKE   +K   ++  + +D+  N       +D++S  +L E ++  
Sbjct: 487  KYGTDQVVVGDLVFCKEHNIEKVKGTASADCKDEDSNAIFGSHDIDEVSGAELPEERNNP 546

Query: 1435 VKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEF 1614
            VK +  EDI+A  + IDD+VLPLPGSR+  P NDI ++YHDLAKKD ISLTESAHN KEF
Sbjct: 547  VKVVAAEDILAGNFAIDDVVLPLPGSRVILPTNDIAQVYHDLAKKDAISLTESAHNVKEF 606

Query: 1615 SLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSD---EK 1785
            S+T+MTG+YRRVFQKP D+EWELL Y +  IPLAETD DII+K S P+    +++    +
Sbjct: 607  SITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAK-SKPAHVAEENEVNGNE 665

Query: 1786 EQIKCQADCDNEIELVAG----TGETKSDIQIEEESLAAASKTQESEMALKLSFTLPASC 1953
            E  K     +NE  L        GE ++++Q E       + +QE +MALKLSFTLPASC
Sbjct: 666  ESTKRSKRVENEAVLQTDDNKVDGEREAELQAES---TCGTNSQEPQMALKLSFTLPASC 722

Query: 1954 YATMAIRELLKTSTSV 2001
            YATMAIRELLKTSTSV
Sbjct: 723  YATMAIRELLKTSTSV 738


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  842 bits (2174), Expect = 0.0
 Identities = 433/695 (62%), Positives = 520/695 (74%), Gaps = 21/695 (3%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGILCYIS LPGFRGILKQRY+DFIVNEVD DGNVVHLT LE P +  EE KE    + 
Sbjct: 59   DVGILCYISQLPGFRGILKQRYADFIVNEVDTDGNVVHLTCLEPPPQMVEETKECGAKVS 118

Query: 181  D------KDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDE--SIVLSPSSDKSHR 336
            D      K Y +E+E FR+LAGDSD EKL+  + Q+     S D    IVLSP SDK+HR
Sbjct: 119  DEKMSESKSYEAEIELFRSLAGDSDAEKLESLISQVDSCTGSEDSVPHIVLSPDSDKTHR 178

Query: 337  TAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRG 516
            TAVHNFFK+   FLVTDT DGPD+ SKC+RVRL                     P+D RG
Sbjct: 179  TAVHNFFKQNFKFLVTDTTDGPDASSKCIRVRLDSGGHKNNGRNSKKRKERGEKPFDSRG 238

Query: 517  SDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVF 696
            S +WP+ +GKFLRFHLYKENKDTQEALG++GKMLGIQ +SFGFAGTKDKR+VSTQRVTVF
Sbjct: 239  SSNWPEHLGKFLRFHLYKENKDTQEALGIIGKMLGIQSKSFGFAGTKDKRAVSTQRVTVF 298

Query: 697  KQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATA 876
            KQ+A++LAALN+RLIGIKVG+FC+V EGL+LG+L GNRFT+TLR + A++ED I+A+A +
Sbjct: 299  KQQASRLAALNDRLIGIKVGDFCHVKEGLLLGRLLGNRFTVTLRGVIADSEDTIKAAADS 358

Query: 877  LAKNGFINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGE-----KDVTRKI 1041
            L ++GFINYFGLQRFG+ S+ THLIGAALLRGEWK AV MILDPREG+       V RK 
Sbjct: 359  LGRHGFINYFGLQRFGTGSVPTHLIGAALLRGEWKTAVSMILDPREGDILLLFPYVIRKA 418

Query: 1042 REYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSY 1221
            REYYKES D+EGTLRQLPRH+VAERA+L C +KCPG+YLQA+ AIPRTLRMM+VH YQSY
Sbjct: 419  REYYKESNDIEGTLRQLPRHLVAERAVLQCLKKCPGDYLQAMKAIPRTLRMMYVHGYQSY 478

Query: 1222 LWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDIS 1401
            LWNHAAS R+QKYG  QV+LGDLVYCK  +++KE    +    DD+ +DT    HLD+ S
Sbjct: 479  LWNHAASERVQKYGFDQVLLGDLVYCKGDDSEKETVGVNSECNDDNCDDTYDCSHLDETS 538

Query: 1402 ITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGIS 1581
             TDL E K+  VK +  ED+    YT+DD+VLP+PGSR+ +P N+I ++YHDLAKKD I+
Sbjct: 539  GTDLLERKNTLVKVVTVEDMSTGNYTVDDVVLPMPGSRVIFPTNEIAKVYHDLAKKDAIN 598

Query: 1582 LTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPST 1761
            LTES H  KEFS+T+MTG+YRRVFQKP DFEWELL Y D N PLAETD D ISK+ S + 
Sbjct: 599  LTESVHRVKEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETDLDKISKTGSTNI 658

Query: 1762 FVR--------DSDEKEQIKCQADCDNEIELVAGTGETKSDIQIEEESLAAASKTQESEM 1917
              +        D+D  +  K      N I L + T E +S+ ++E E + + S  QE++M
Sbjct: 659  IKQEEQGKGDEDNDLSDCTKLPVCSRNSIALSSDTNE-ESEREVESEQV-SGSNWQETQM 716

Query: 1918 ALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 2022
            ALKLS TLPASCYATMAIRELLKTSTSVA+HK LN
Sbjct: 717  ALKLSLTLPASCYATMAIRELLKTSTSVAYHKTLN 751


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  839 bits (2168), Expect = 0.0
 Identities = 431/697 (61%), Positives = 531/697 (76%), Gaps = 23/697 (3%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAP---LETAEEKKEKIT 171
            DVGI CYIS +PGFRGILKQRYSDFIVNEVD +GNVVHLTSL  P   +E AEE++E+IT
Sbjct: 56   DVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAEEREEEIT 115

Query: 172  DILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNS-NDESIVLSPSSDKSHRTAVH 348
            + + K+Y++E+ESFR LAGD+D ++L+ F++Q+    N  N   I+LSP SDK+HRTA H
Sbjct: 116  NQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDKAHRTATH 175

Query: 349  NFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXX-PYDCRGSDS 525
            NFFKE+L FLVTDTVDGPD+ SKC+RVRL                      P+D RGSD 
Sbjct: 176  NFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPFDSRGSDH 235

Query: 526  WPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQR 705
            WP+ +GKFLRFHLYKENKDTQEA+GL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ 
Sbjct: 236  WPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQH 295

Query: 706  ANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAK 885
            A++LAALN+RLIGIKVG+FCYVNEGL+LGQL GNRFT+TLR + A++ED I+ SA +L +
Sbjct: 296  ASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKGSADSLGR 355

Query: 886  NGFINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDV-------TRKIR 1044
            +GFINYFGLQRFGS S+ THLIGAALLRGEWK AV MILDPREG+  +        R  R
Sbjct: 356  HGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICFMWMRMAR 415

Query: 1045 EYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYL 1224
            EYYKES D++GTLRQLPR++ AERA+L C +KCPGNYLQAL AIPRTLRMM+VHSYQSYL
Sbjct: 416  EYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYL 475

Query: 1225 WNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISI 1404
            WNHAASMR+QKYG  QVV+GDLVYCK  +T++E+ S++   EDD   D     +LD+ S 
Sbjct: 476  WNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANSACEDDDCEDMYGCSNLDETSG 535

Query: 1405 TDLSEVKSMSVK---AICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDG 1575
            TDLSE K   VK   A+  ED+    YTI+D++LP+PGSR++YP NDI ++YHDLA+KD 
Sbjct: 536  TDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDIAKVYHDLAEKDA 595

Query: 1576 ISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSP 1755
            I+L ES H++KEFS+T+MTG+YRRVFQKP DFEWE+L+Y D   PLAETD + ++K+ S 
Sbjct: 596  INLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSYTDGTTPLAETDMEKLAKAKSI 655

Query: 1756 STFVRDSDEKEQIKCQADC-------DNEIELVAG-TGETKSDIQIEEESLAAASKTQES 1911
                 +  +K   K  +DC        N++ L A    E + ++++ +        T+ +
Sbjct: 656  ELNKEEETKKNDTKSPSDCMRQPMSSGNDLHLSAEYNREGEREVEVAKVEPLYGPNTRGA 715

Query: 1912 EMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 2022
            + ALKL+FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 716  QTALKLTFTLPASCYATMAIRELLKTSTSVAFHKTLN 752


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  835 bits (2158), Expect = 0.0
 Identities = 430/688 (62%), Positives = 519/688 (75%), Gaps = 14/688 (2%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            +VGI CYIS LPGFRGILKQRYSDF+VNEVD++GNVVHLT+LEAP E  +E   K  D  
Sbjct: 7    EVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTEDAA 66

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
             KDYS+E+E FR LA   DVE+L+ F+ ++  G       IVLSP  DK HRTAVHNFFK
Sbjct: 67   SKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHNFFK 126

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            E L FLVTD VDGPD+ SKC+RVRL                     P+D RG D W + +
Sbjct: 127  ENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDDWSEHV 186

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHL+KENKDTQEALG++GKMLGIQPR+FGFAGTKDKR+V+ QRVTVFKQ A++LA
Sbjct: 187  GKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQFASRLA 246

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALN+RLIGIKVG+FCYV EGL LGQL GNRFTITLR + A++EDII+ASA AL K GF+N
Sbjct: 247  ALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGKQGFVN 306

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGS SI THLIGA+LLRGEWK+ V M+L+PREGE+DV  + R+YYKES D++GT
Sbjct: 307  YFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESNDIDGT 366

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LR+LPR++VAERA+L C +KCPGNY QAL A+PRTLRMM+VHSYQSYLWNHAASMR+QKY
Sbjct: 367  LRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASMRVQKY 426

Query: 1261 GVHQVVLGDLVYCKEQETQK--EMTSSHL---NWEDDSGNDTQVDCHLDDISITDLSEVK 1425
            G  +VV+GDLVYCK  ET+K   + SS     N  D++ +DT    HLDDIS T++ E +
Sbjct: 427  GTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETNVPEAR 486

Query: 1426 SMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNS 1605
               VKA+  EDI    YTIDDIVLPLPGSR+ +P NDI  ++HDLAKKDGISLTES HN 
Sbjct: 487  VSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTESVHNV 546

Query: 1606 KEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSS-------PSTF 1764
            KEFS+TN+TG+YRRVFQKP DFEW++L Y D NIPL ETD++ I+K+         P+  
Sbjct: 547  KEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKEYPTGV 606

Query: 1765 VRDSDEKEQIKCQADCD-NEIELVAGTGETKSD-IQIEEESLAAASKTQESEMALKLSFT 1938
              D    ++IK Q++C  N+++L     E +S+  ++           Q +++ALKLSFT
Sbjct: 607  SGDGSLHDRIK-QSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIALKLSFT 665

Query: 1939 LPASCYATMAIRELLKTSTSVAFHKALN 2022
            LPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 666  LPASCYATMAIRELLKTSTSVAFHKTLN 693


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  832 bits (2148), Expect = 0.0
 Identities = 425/689 (61%), Positives = 518/689 (75%), Gaps = 15/689 (2%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETA--EEKKEKITD 174
            D GILC+IS+LPGFRGILKQRY DFIVNEVD D  VVHLTSL+ P E A  E  + K +D
Sbjct: 52   DAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHNETKASD 111

Query: 175  ILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSND-ESIVLSPSSDKSHRTAVHN 351
             L++ Y+SE+ESFR+LAGDSD + L+  ++Q+  G N +    IVLS +SDKSHRTA+HN
Sbjct: 112  QLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKSHRTAIHN 171

Query: 352  FFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXX-PYDCRGSDSW 528
            FFK+   FLVTDTVDGPD+ SKC+RVRL                      P+D RGS++W
Sbjct: 172  FFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFDSRGSENW 231

Query: 529  PKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRA 708
            P+ +GKFLRFHLYKENKDTQEALGL+ KMLGI PRSFGFAGTKDKRSVSTQRVTVFKQRA
Sbjct: 232  PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 291

Query: 709  NKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKN 888
            +KLAALN+RLIGI++G+FCYV EGL+LGQL GNRFTITLR +  ++ED+I+ASA +L +N
Sbjct: 292  SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 351

Query: 889  GFINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGD 1068
            GFINYFGLQRFGS S+ THL+GA LLRGEWK+AV MILDPREGE++   K REYYKE+ D
Sbjct: 352  GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDD 411

Query: 1069 VEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMR 1248
            ++GTLR+LPRH+VAERAIL C +KCPGNYLQAL AIPRTLRMM+VHSYQS+LWNHAAS R
Sbjct: 412  IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 471

Query: 1249 IQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKS 1428
            +QK+G   VV+GDLV+CK  +T+KE+   +  +E +S ND     HLD++  TD  + + 
Sbjct: 472  VQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRH 531

Query: 1429 MSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSK 1608
              VK +  EDI + KYTIDD+VLPLPGSR+ YP+ND+ E+YH LA+KDGI+LTES HN K
Sbjct: 532  NLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVK 591

Query: 1609 EFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRD----- 1773
            EFS+T+MTG YRRVFQKP DFEWELL Y D N PLAETD D I+K    +    +     
Sbjct: 592  EFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVKEEEAVCG 651

Query: 1774 ---SDEKEQIKCQADCDNEIELVAGTGETKSDIQIEE---ESLAAASKTQESEMALKLSF 1935
                D  + +K       +I+L     E     ++++   ES+  A  +Q  +MALKL  
Sbjct: 652  NKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD-SQGKQMALKLGL 710

Query: 1936 TLPASCYATMAIRELLKTSTSVAFHKALN 2022
            TLP+SCYATMAIRELLKTSTSVAFHK LN
Sbjct: 711  TLPSSCYATMAIRELLKTSTSVAFHKTLN 739


>gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  829 bits (2141), Expect = 0.0
 Identities = 426/673 (63%), Positives = 508/673 (75%), Gaps = 6/673 (0%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            DVGI CYIS LPGFRGILKQRYSDF+VNEVD + NVVHLT+L+AP ET +E + K  D  
Sbjct: 8    DVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIETKTHDAT 67

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
             KDY++E+ESFR+L    D E+L+  ++QI  G   +   IVLSP  DKSHRTAVHNFFK
Sbjct: 68   SKDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRTAVHNFFK 127

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            E   FLVTDTVDGPD+ SKC+RVR+                     P+D RGSD W +++
Sbjct: 128  ENFKFLVTDTVDGPDASSKCIRVRINSGGQNSRGRNSRKRKERGDKPFDSRGSDDWSENV 187

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHLYKENKDTQEALG++ KMLGIQPRSFGFAGTKDKR+V+TQRVTVFKQ A++LA
Sbjct: 188  GKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFKQLASRLA 247

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALN+RLIGIKVG+FCYV EGLVLGQL GNRFTITLR + A++ED I+AS  AL K GFIN
Sbjct: 248  ALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIKASVIALGKQGFIN 307

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKI----REYYKESGD 1068
            YFGLQRFGS S+ THLIGA LLRGEWK+ V + LDPREG  D+   +    REYYKE+ D
Sbjct: 308  YFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREG--DILLMLLGIAREYYKETND 365

Query: 1069 VEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMR 1248
            +EGTLRQLPRH+V+E+AIL C +KCPGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR
Sbjct: 366  IEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR 425

Query: 1249 IQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKS 1428
            +QKYG  +VVLGDLVYCK  ET+K          D++GNDT     LDDIS T+L E + 
Sbjct: 426  VQKYGTDRVVLGDLVYCKGNETEKVSEVVSSKCVDENGNDTLDPIDLDDISGTNLPEERL 485

Query: 1429 MSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSK 1608
              VKA+  EDI++  YTIDD+VLP+PGSR+ +P NDI  ++HDLAKKD ISLTES HN K
Sbjct: 486  NLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKKDAISLTESVHNVK 545

Query: 1609 EFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKE 1788
            EFS+T+MTG+YRRVFQKP DFEWE+L Y D N PL +TD+D I+K + PS+   D    +
Sbjct: 546  EFSITSMTGSYRRVFQKPMDFEWEILKYIDGNKPLVDTDFDKIAK-TKPSSLNEDGRLHD 604

Query: 1789 QIKCQADC-DNEIEL-VAGTGETKSDIQIEEESLAAASKTQESEMALKLSFTLPASCYAT 1962
            + K Q++C DN+I L     G      ++ +      +  QE++ ALKLSFTLPASCYAT
Sbjct: 605  KTK-QSECLDNDIGLQTDDNGAKAKGEELPQAESLCDTNPQETQTALKLSFTLPASCYAT 663

Query: 1963 MAIRELLKTSTSV 2001
            MAIRELLKTSTSV
Sbjct: 664  MAIRELLKTSTSV 676


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  823 bits (2126), Expect = 0.0
 Identities = 422/679 (62%), Positives = 516/679 (75%), Gaps = 5/679 (0%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLET-AEEKKEKITDI 177
            DVGIL YIS LPGFRGILKQRYSDFIVNEVD DGNVVHLTSL+AP E    E    I   
Sbjct: 47   DVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEVIVSESGPTIVHS 106

Query: 178  LDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFF 357
              + Y+SE+E FR+LAGDSD E L+ F+ QI  GVN +   IV SP +DK+HRTAVHNFF
Sbjct: 107  TSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKTHRTAVHNFF 166

Query: 358  KERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKD 537
            K +  FLVTDT+DGPDS SKCVRVR+                     P+D RGSD+WP+ 
Sbjct: 167  K-KFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKPFDSRGSDNWPEH 225

Query: 538  MGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKL 717
            +GKFLRFHLYKENKDTQEALGL+GKMLGIQ RSFGFAGTKDKRS+STQRVTVFKQ A+++
Sbjct: 226  VGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQRVTVFKQHASRI 285

Query: 718  AALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFI 897
            AALN+RLIGIK+GNF Y+ EGL+LGQL GNRFTITLR + A +ED+I+ASA AL ++GFI
Sbjct: 286  AALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIKASAEALGRHGFI 345

Query: 898  NYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEG 1077
            NYFGLQRFGS S+ THL+GA+LLRGEWK AV MILDPREG+  +  + R+YYKES D++G
Sbjct: 346  NYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRARDYYKESDDIDG 405

Query: 1078 TLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQK 1257
            TL+QLPR++VAERAIL C +KCPGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR+QK
Sbjct: 406  TLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQK 465

Query: 1258 YGVHQVVLGDLVYCKEQETQKEMTSSHLNWED-DSGNDTQVD-CHLDDISITDLSEVKSM 1431
            YG+ +VV+GDLVYCKE  T+     +   +ED D G+    D CHL+++    L   +  
Sbjct: 466  YGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEVCKLGLPTERHK 525

Query: 1432 SVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKE 1611
             VKA+   D+++  +TIDD+VLPLPGSR+ YP NDI E+Y+DLA KD ISLT S HN KE
Sbjct: 526  LVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLATKDSISLTNSVHNVKE 585

Query: 1612 FSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKEQ 1791
            FS+T+MTG+YRRVFQ+PKD+EWEL++Y D N+PLA++D   + KS S      +  ++E+
Sbjct: 586  FSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSV-----EISKEEK 640

Query: 1792 IKCQADCDNEIELVAGTGETKSDIQIEE--ESLAAASKTQESEMALKLSFTLPASCYATM 1965
            I  ++  ++ ++    +   K +IQ+E   +       TQ+ +MALKLSFTLPAS YATM
Sbjct: 641  IADKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSYATM 700

Query: 1966 AIRELLKTSTSVAFHKALN 2022
            AIRELLKTSTSVAFHK LN
Sbjct: 701  AIRELLKTSTSVAFHKTLN 719


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  823 bits (2125), Expect = 0.0
 Identities = 424/681 (62%), Positives = 513/681 (75%), Gaps = 14/681 (2%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            +VGI CYIS LPGFRGILKQRYSDF+VNEVD++GNVVHLT+LEAP E  +E   K  D  
Sbjct: 7    EVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTEDAA 66

Query: 181  DKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFK 360
             KDYS+E+E FR LA   DVE+L+ F+ ++  G       IVLSP  DK HRTAVHNFFK
Sbjct: 67   SKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHNFFK 126

Query: 361  ERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPKDM 540
            E L FLVTD VDGPD+ SKC+RVRL                     P+D RG D W + +
Sbjct: 127  ENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDDWSEHV 186

Query: 541  GKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLA 720
            GKFLRFHL+KENKDTQEALG++GKMLGIQPR+FGFAGTKDKR+V+ QRVTVFKQ A++LA
Sbjct: 187  GKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQFASRLA 246

Query: 721  ALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFIN 900
            ALN+RLIGIKVG+FCYV EGL LGQL GNRFTITLR + A++EDII+ASA AL K GF+N
Sbjct: 247  ALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGKQGFVN 306

Query: 901  YFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGT 1080
            YFGLQRFGS SI THLIGA+LLRGEWK+ V M+L+PREGE+DV  + R+YYKES D++GT
Sbjct: 307  YFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESNDIDGT 366

Query: 1081 LRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKY 1260
            LR+LPR++VAERA+L C +KCPGNY QAL A+PRTLRMM+VHSYQSYLWNHAASMR+QKY
Sbjct: 367  LRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASMRVQKY 426

Query: 1261 GVHQVVLGDLVYCKEQETQK--EMTSSHL---NWEDDSGNDTQVDCHLDDISITDLSEVK 1425
            G  +VV+GDLVYCK  ET+K   + SS     N  D++ +DT    HLDDIS T++ E +
Sbjct: 427  GTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETNVPEAR 486

Query: 1426 SMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNS 1605
               VKA+  EDI    YTIDDIVLPLPGSR+ +P NDI  ++HDLAKKDGISLTES HN 
Sbjct: 487  VSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTESVHNV 546

Query: 1606 KEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSS-------PSTF 1764
            KEFS+TN+TG+YRRVFQKP DFEW++L Y D NIPL ETD++ I+K+         P+  
Sbjct: 547  KEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKEYPTGV 606

Query: 1765 VRDSDEKEQIKCQADCD-NEIELVAGTGETKSD-IQIEEESLAAASKTQESEMALKLSFT 1938
              D    ++IK Q++C  N+++L     E +S+  ++           Q +++ALKLSFT
Sbjct: 607  SGDGSLHDRIK-QSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIALKLSFT 665

Query: 1939 LPASCYATMAIRELLKTSTSV 2001
            LPASCYATMAIRELLKTSTSV
Sbjct: 666  LPASCYATMAIRELLKTSTSV 686


>gb|EOY11113.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao]
          Length = 763

 Score =  819 bits (2116), Expect = 0.0
 Identities = 435/717 (60%), Positives = 519/717 (72%), Gaps = 43/717 (5%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLET------------ 144
            DVGILC+ISHLPGFRGILKQRYSDFIVNEVD +GNVVHLTSL+AP E             
Sbjct: 50   DVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEVMIDVFSLNKFTQ 109

Query: 145  -AEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSS 321
              +E + K  D L+K Y+SE+  FR+LAGD+D ++L+ F++QI  G   +   IVLSP S
Sbjct: 110  AVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDS 169

Query: 322  DKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXP 501
            DKSHRTA+HNFFKE L FLVTDTVDGPDS SKC+RVRL                     P
Sbjct: 170  DKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDK-P 228

Query: 502  YDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQ 681
            YD RGS  WP+ +GKFLRFHLYKENKDTQEALGL+GKMLGIQPRSFGFAGTKDKRSVSTQ
Sbjct: 229  YDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQ 288

Query: 682  RVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIR 861
            RVTVFKQ A++LAALNERLIGIKVG+FCYV +  +LGQL GNRFTI LR + A++E+ I+
Sbjct: 289  RVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETIK 348

Query: 862  ASATALAKNGFINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGE------- 1020
            AS  +L ++GFINYFGLQRFGS SI TH IGA LLRGEW+AA   ILDPREG+       
Sbjct: 349  ASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGDILSLTFF 408

Query: 1021 -----------KDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQAL 1167
                          T++ REYYKE+GD+EGTLRQLPRH+VAERA+L C +KCPGNYLQAL
Sbjct: 409  FPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQAL 468

Query: 1168 SAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCK--EQETQKEMTSSHL 1341
             AIPRTLRMM+VHSYQSYLWNHAASMR++KYG ++VVLGDLVYCK  + E  K + S H 
Sbjct: 469  KAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVPSEH- 527

Query: 1342 NWEDDSGNDTQVDCHLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRIT 1521
              ED++  D      LD+IS TDL E K+  VKAI   DI    YTI+D+VLP+PGSRI 
Sbjct: 528  --EDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRII 585

Query: 1522 YPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDP 1701
            YP+NDI  +YHD+AKKDGISLTES HN KEFS+T+MTG+YRRVFQKP DFEWELL+Y D 
Sbjct: 586  YPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDG 645

Query: 1702 NIPLAETDWDIISKS--------SSPSTFVRDSDEKEQIKCQADCDNEIELVAGTGETKS 1857
            +I L+ETD D I+K+          P+      D  + ++     +++ +   G  E + 
Sbjct: 646  SIALSETDLDKIAKTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEG 705

Query: 1858 DIQIEEESLAA--ASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 2022
              + E   + +   S +  ++ ALKL+FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 706  SREAEPPQIHSLPESNSLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFHKTLN 762


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  811 bits (2096), Expect = 0.0
 Identities = 418/683 (61%), Positives = 512/683 (74%), Gaps = 15/683 (2%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETA--EEKKEKITD 174
            D GILC+IS+LPGFRGILKQRY DFIVNEVD D  VVHLTSL+ P E A  E  + K +D
Sbjct: 8    DAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHNETKASD 67

Query: 175  ILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSND-ESIVLSPSSDKSHRTAVHN 351
             L++ Y+SE+ESFR+LAGDSD + L+  ++Q+  G N +    IVLS +SDKSHRTA+HN
Sbjct: 68   QLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKSHRTAIHN 127

Query: 352  FFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXX-PYDCRGSDSW 528
            FFK+   FLVTDTVDGPD+ SKC+RVRL                      P+D RGS++W
Sbjct: 128  FFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFDSRGSENW 187

Query: 529  PKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRA 708
            P+ +GKFLRFHLYKENKDTQEALGL+ KMLGI PRSFGFAGTKDKRSVSTQRVTVFKQRA
Sbjct: 188  PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 247

Query: 709  NKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKN 888
            +KLAALN+RLIGI++G+FCYV EGL+LGQL GNRFTITLR +  ++ED+I+ASA +L +N
Sbjct: 248  SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 307

Query: 889  GFINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGD 1068
            GFINYFGLQRFGS S+ THL+GA LLRGEWK+AV MILDPREG+  +  K REYYKE+ D
Sbjct: 308  GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGDI-LLFKAREYYKETDD 366

Query: 1069 VEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMR 1248
            ++GTLR+LPRH+VAERAIL C +KCPGNYLQAL AIPRTLRMM+VHSYQS+LWNHAAS R
Sbjct: 367  IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 426

Query: 1249 IQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKS 1428
            +QK+G   VV+GDLV+CK  +T+KE+   +  +E +S ND     HLD++  TD  + + 
Sbjct: 427  VQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRH 486

Query: 1429 MSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSK 1608
              VK +  EDI + KYTIDD+VLPLPGSR+ YP+ND+ E+YH LA+KDGI+LTES HN K
Sbjct: 487  NLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVK 546

Query: 1609 EFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRD----- 1773
            EFS+T+MTG YRRVFQKP DFEWELL Y D N PLAETD D I+K    +    +     
Sbjct: 547  EFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVKEEEAVCG 606

Query: 1774 ---SDEKEQIKCQADCDNEIELVAGTGETKSDIQIEE---ESLAAASKTQESEMALKLSF 1935
                D  + +K       +I+L     E     ++++   ES+  A  +Q  +MALKL  
Sbjct: 607  NKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD-SQGKQMALKLGL 665

Query: 1936 TLPASCYATMAIRELLKTSTSVA 2004
            TLP+SCYATMAIRELLKTSTSV+
Sbjct: 666  TLPSSCYATMAIRELLKTSTSVS 688


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  798 bits (2061), Expect = 0.0
 Identities = 413/680 (60%), Positives = 505/680 (74%), Gaps = 6/680 (0%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETA--EEKKEKITD 174
            DVGI C+IS LPGFRGILKQRY+DFIVNEVD+DGNVVHLTSL+ P E A  EE K K  D
Sbjct: 44   DVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEEDKAKSCD 103

Query: 175  ILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNF 354
             + ++Y+S +ESF++++  +D E+L+  ++Q+  G +     +VL PSSDKS RTA+HNF
Sbjct: 104  NVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPSSDKSKRTAIHNF 163

Query: 355  FKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPK 534
             KE   FLVTDTVDGPDS SKC+RVR+                     P+D RGS+ WP+
Sbjct: 164  VKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSRGSEHWPE 223

Query: 535  DMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANK 714
             +GKFLRFHLYKENKDTQEALGL+GKMLG+QP+SFGF+GTKDKRSVSTQRVTVFKQ+A+K
Sbjct: 224  HVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASK 283

Query: 715  LAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGF 894
            LAALN+RL GIKVG+FC V EGL+LGQL GNRFTITLR + A++E+ I+ SA +L K+GF
Sbjct: 284  LAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAESLGKDGF 343

Query: 895  INYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVE 1074
            INYFGLQRFGS S+ TH +GAALL+GEWK AV MILDPRE E+ V    REYYKE+GD++
Sbjct: 344  INYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDAREYYKETGDID 403

Query: 1075 GTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQ 1254
            GTLRQLPR++VAERAIL C +KCPGNYLQAL  IPRTLRMM+VHSYQSYLWN+AAS+R++
Sbjct: 404  GTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVK 463

Query: 1255 KYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDC-HLDDISITDLSEVKSM 1431
             YG  QVVLGDLV  K    ++ + S  L  E +  ++  +DC  +DD ++ DL   +S 
Sbjct: 464  NYGTSQVVLGDLVSTKVDAAKRMVDS--LTSEHNESSEEALDCDQVDDTAVVDLPAERSD 521

Query: 1432 SVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKE 1611
             VK +  ED+ A  Y+  DIVLPLPGSR+ YP NDI EIYHDLAKKDGISLTES H  KE
Sbjct: 522  LVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTESIHGVKE 581

Query: 1612 FSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKEQ 1791
            FS+T+MTG YRRVFQKP DFEWELL Y D N PLAETD D I   + P   V  ++E E 
Sbjct: 582  FSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRI-PMNKPVEKVGSTEEIED 640

Query: 1792 IKCQADCDNEIELVAGTGETKSDIQI---EEESLAAASKTQESEMALKLSFTLPASCYAT 1962
               ++D +        +GET    Q    E E       +++++MALK++ TLP+SCYAT
Sbjct: 641  ESMKSDTNPH-----DSGETNLKDQTDSNEAEKDTGNPDSEQTQMALKMALTLPSSCYAT 695

Query: 1963 MAIRELLKTSTSVAFHKALN 2022
            MAIRELLKTSTSVA+HK LN
Sbjct: 696  MAIRELLKTSTSVAYHKTLN 715


>ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Glycine max]
          Length = 690

 Score =  788 bits (2034), Expect = 0.0
 Identities = 406/683 (59%), Positives = 500/683 (73%), Gaps = 9/683 (1%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEKITDIL 180
            +VGI C+IS LPGFRGILKQRYSDFIVNEVD DG VV L+SL+AP E  E  +E  T+  
Sbjct: 10   EVGISCFISDLPGFRGILKQRYSDFIVNEVDRDGTVVQLSSLDAPQEEPESSQENGTNTS 69

Query: 181  DK--DYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNF 354
            D    Y+S++ESF++LAGDSD   L+ F+++I  G       IVLSP SDKSHR A+HNF
Sbjct: 70   DNVVSYASQIESFKSLAGDSDAVLLEEFINKINAGGEDGVSPIVLSPDSDKSHRKAMHNF 129

Query: 355  FKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPK 534
            FKE   FLVTD VDGPD+ SKC+RVRL                     P+D RGS++WPK
Sbjct: 130  FKENFKFLVTDVVDGPDASSKCIRVRLNSAEPNNKGKNSKKRKERGDKPFDSRGSENWPK 189

Query: 535  DMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANK 714
            ++GKFLRFHLYKENKDT EALG++G ML +QP+SFGFAGTKDKR+V+TQRVTV+KQRA++
Sbjct: 190  NVGKFLRFHLYKENKDTHEALGVIGNMLSVQPKSFGFAGTKDKRAVTTQRVTVYKQRASR 249

Query: 715  LAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGF 894
            LA+LN+RL GIK+G+FCYV EGL LGQL GNRFTITLR + A++EDII+ASA AL ++GF
Sbjct: 250  LASLNKRLFGIKLGDFCYVKEGLCLGQLLGNRFTITLRGIVADSEDIIKASADALGRHGF 309

Query: 895  INYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVE 1074
            INYFGLQRFGS S+ THLIGAALL+GEWK AV MILDPR+GEK    K R+YYKES DV 
Sbjct: 310  INYFGLQRFGSGSLPTHLIGAALLQGEWKLAVDMILDPRDGEKSAIAKARKYYKESSDVV 369

Query: 1075 GTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQ 1254
            GTL+QLPR++VAERA+L   +  PGNYLQAL +IPRTLRM++VHSYQSYLWNHAAS R+Q
Sbjct: 370  GTLKQLPRYLVAERAVLQTLKTSPGNYLQALKSIPRTLRMLYVHSYQSYLWNHAASKRVQ 429

Query: 1255 KYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITDLSEVKSMS 1434
            KYG   VVLGDLVYCKE  T K   S    + +D     + D + +D    ++ E +  S
Sbjct: 430  KYGTENVVLGDLVYCKENSTGKVTESVGSEYAEDCSG--RYDSNNEDEISGEIHE-EIDS 486

Query: 1435 VKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEF 1614
            VK +  ED+ +  YTIDD++LP+PGSRI YP N I  +Y DLAKKDGISLTES HN ++F
Sbjct: 487  VKVVDVEDLNSGYYTIDDVILPMPGSRIKYPTNHIANVYEDLAKKDGISLTESVHNVEDF 546

Query: 1615 SLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTF----VRDSDE 1782
            S+T++TG YRRVFQKP +FEWELL Y D N  L ETD D ++KS    T       +   
Sbjct: 547  SITSITGCYRRVFQKPINFEWELLTYSDSNKQLVETDLDKVNKSKPMGTVKQMGAANGKN 606

Query: 1783 KEQIKC--QADCDNEIELVAGTGE-TKSDIQIEEESLAAASKTQESEMALKLSFTLPASC 1953
            +E   C  + +  N++  V    E    +I++  +   + S +Q+S++ALKLSFTLPASC
Sbjct: 607  EEAFDCIRELESSNDVVKVENYSEIAGEEIKLPHDESLSGSSSQDSQIALKLSFTLPASC 666

Query: 1954 YATMAIRELLKTSTSVAFHKALN 2022
            YATMAIRELLKTSTSVA+HK LN
Sbjct: 667  YATMAIRELLKTSTSVAYHKTLN 689


>ref|XP_004494684.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Cicer arietinum]
          Length = 698

 Score =  778 bits (2009), Expect = 0.0
 Identities = 396/692 (57%), Positives = 505/692 (72%), Gaps = 18/692 (2%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEA-------PLETAEEKK 159
            DVGI CYIS+LPGFRG+LKQRYSDFIVNEVD+DG VV L+SLEA       P++ ++  +
Sbjct: 8    DVGISCYISNLPGFRGVLKQRYSDFIVNEVDIDGKVVELSSLEASAEESKVPVDESKSVQ 67

Query: 160  EKITDILDKD---YSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKS 330
            E  T+  + +   Y+S++ESF++LAG+SD   L+ F++QI +G   +   I+LSP SDKS
Sbjct: 68   ENKTNTSESEVISYASQIESFKSLAGESDASSLEEFINQINVGGEDSPSPIILSPDSDKS 127

Query: 331  HRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDC 510
            HRTAVH FF+E   FLVTDTVDGPD+ SKC+RVRL                     P+D 
Sbjct: 128  HRTAVHVFFRENFKFLVTDTVDGPDASSKCIRVRLNSGGPNNKGKNSRKRKDRDNKPFDS 187

Query: 511  RGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVT 690
            RGS++WP++ GKFLRFHL+KENKDTQEALG+LG MLGI+ RSFGFAGTKDKR+V+TQRVT
Sbjct: 188  RGSENWPENAGKFLRFHLFKENKDTQEALGVLGNMLGIKSRSFGFAGTKDKRAVTTQRVT 247

Query: 691  VFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASA 870
            V+KQ+A KLA+LNE+L GIKVG+FCYVNEGL LGQL GNRFTITLR + A++ D I+A+A
Sbjct: 248  VYKQQARKLASLNEKLFGIKVGDFCYVNEGLCLGQLLGNRFTITLRGIVADSVDTIKAAA 307

Query: 871  TALAKNGFINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREY 1050
             +L ++GFINYFGLQRFGS S+ TH IGAAL RGEWK AV +ILDPR+GE+ V  K R+Y
Sbjct: 308  DSLGRHGFINYFGLQRFGSGSVPTHRIGAALFRGEWKLAVDLILDPRDGERYVIAKARKY 367

Query: 1051 YKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWN 1230
            YK++ DV GTL+QLP+ +VAERA+L   ++ PGNYLQAL +IPRTLRMM+VHSYQSYLWN
Sbjct: 368  YKDTNDVAGTLKQLPQFLVAERAVLKSLKQFPGNYLQALKSIPRTLRMMYVHSYQSYLWN 427

Query: 1231 HAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDCHLDDISITD 1410
            HAAS R+QKYG  QVVLGDLVYCKE    K         +DD G+    D +++D    D
Sbjct: 428  HAASTRVQKYGTEQVVLGDLVYCKENPPSKATEIVGSECDDDCGD--IYDSNIEDEIPED 485

Query: 1411 LSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTE 1590
            + +  + SVKA+  ED+ ++ YTIDD++LP+PGSR  YP NDI ++Y+DL  KDGISLTE
Sbjct: 486  IHDKSNSSVKAVNAEDLNSKSYTIDDVILPMPGSRSIYPANDIVKVYNDLTNKDGISLTE 545

Query: 1591 SAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVR 1770
            + HN+KEFS+T++TG+YRRVFQKP +FEWELL Y D N PL ETD D I KS   +    
Sbjct: 546  NVHNAKEFSMTSVTGSYRRVFQKPINFEWELLTYTDSNKPLVETDLDKIGKSKRTNVHAV 605

Query: 1771 DSDEKEQIKCQADCDNEIELVAGTGETKSD--------IQIEEESLAAASKTQESEMALK 1926
             +   ++     DC  ++E      + ++D        + +  +     S +++S  ALK
Sbjct: 606  GASNGQKETTAFDCIRQVESSDDGVKVETDYDENASKEVILPHDESVPDSSSKDSHTALK 665

Query: 1927 LSFTLPASCYATMAIRELLKTSTSVAFHKALN 2022
            L+FTLP+SCYATMAIRELLKTSTSVA+ K LN
Sbjct: 666  LTFTLPSSCYATMAIRELLKTSTSVAYQKTLN 697


>ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Capsella rubella]
            gi|482568803|gb|EOA32992.1| hypothetical protein
            CARUB_v10016322mg [Capsella rubella]
          Length = 704

 Score =  773 bits (1996), Expect = 0.0
 Identities = 402/680 (59%), Positives = 497/680 (73%), Gaps = 6/680 (0%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAP--LETAEEKKEKITD 174
            DVGI C+IS LPGFRGILKQRY+DFIVNEVD++GNVVHLTSL+ P  ++  EE K K +D
Sbjct: 46   DVGISCFISQLPGFRGILKQRYADFIVNEVDINGNVVHLTSLDLPPEMDVKEEDKTKSSD 105

Query: 175  ILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNF 354
             + ++Y+S +ESF++++  +D E+L+  ++Q+  G +     +VL PSSDKS RTA+HNF
Sbjct: 106  NVPQNYTSAIESFKSISNATDAERLETLINQVTSGTDDEISPVVLDPSSDKSKRTAIHNF 165

Query: 355  FKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWPK 534
             KE   FLVTDTVDGPDS SKC+RVR+                     P+D RGS+ WP+
Sbjct: 166  VKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDSRGSEHWPE 225

Query: 535  DMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANK 714
             +GKFLRFHLYKENKDTQEALGL+GKMLG+QP+SFGF+GTKDKRSVSTQ VTVFKQ+A+K
Sbjct: 226  HVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQCVTVFKQQASK 285

Query: 715  LAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGF 894
            LAALN+RL GIKVG+FC+V EGL+LGQL GNRFTITLR + A++E+ I+ SA +L K+GF
Sbjct: 286  LAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSAESLGKDGF 345

Query: 895  INYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVE 1074
            INYFGLQRFGS S+ TH +GAALL+GEWK A       R     V    REYYKE+GD++
Sbjct: 346  INYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ERINAWHVVNDAREYYKETGDID 399

Query: 1075 GTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQ 1254
            GTLRQLPR++VAERAIL C +KCPGNYLQAL  IPRTLRMM+VHSYQSYLWN+AAS+R++
Sbjct: 400  GTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVK 459

Query: 1255 KYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDC-HLDDISITDLSEVKSM 1431
            KYG  QVVLGDLV  K   T+K   +S    E    N+  +DC  +DD +I DL   +S 
Sbjct: 460  KYGTSQVVLGDLVSTKIDATKKMADTS----EHKENNEDALDCDQVDDTAIVDLPAERSD 515

Query: 1432 SVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKE 1611
             VK +  ED+ A  Y+  DIVLPLPGSR+ YP NDI EIYHDLAKKDGISLT+S H  KE
Sbjct: 516  LVKVVSVEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTDSIHGVKE 575

Query: 1612 FSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKEQ 1791
            FS+T+MTG YRRVFQKP DFEWELL Y D N PLAETD D I+ +      V  ++E E 
Sbjct: 576  FSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRITMTVDK---VGSAEEVE- 631

Query: 1792 IKCQADCDNEIELVAGTGETKSDIQIE---EESLAAASKTQESEMALKLSFTLPASCYAT 1962
                   D  +  ++   ET  + Q E   +E       +++++MALK++ TLP+SCYAT
Sbjct: 632  -------DESMNPISNPPETDLNDQTERKDDEKDTGNPNSEQTQMALKMALTLPSSCYAT 684

Query: 1963 MAIRELLKTSTSVAFHKALN 2022
            MAIRELLKTSTSVA+HK LN
Sbjct: 685  MAIRELLKTSTSVAYHKTLN 704


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  771 bits (1990), Expect = 0.0
 Identities = 405/678 (59%), Positives = 499/678 (73%), Gaps = 4/678 (0%)
 Frame = +1

Query: 1    DVGILCYISHLPGFRGILKQR-YSDFIVNEVDLDGNVVHLTSLEAP--LETAEEKKEKIT 171
            DVGI C+IS LPGFRGILKQR Y+DFIVNEVD+DGNVVHLTSL+ P  ++  EE K K +
Sbjct: 44   DVGISCFISQLPGFRGILKQRSYADFIVNEVDIDGNVVHLTSLDLPPEMDVKEEDKTKTS 103

Query: 172  DILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHN 351
            D + ++Y+S +ESFR+++  +D E+L+  ++Q+  G +     +VL PSSDKS RTA+HN
Sbjct: 104  DNVPQNYTSAIESFRSISSVTDAERLETLINQVTSGTDDEISPVVLDPSSDKSKRTAIHN 163

Query: 352  FFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXXPYDCRGSDSWP 531
            F KE   FLVTDTVDGPDS SKC+RVR+                     P+D RGS+ WP
Sbjct: 164  FVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDSRGSEHWP 223

Query: 532  KDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRAN 711
            + +GKFLRFHLYKENKDTQEALGL+GKMLG+QP+SFGF+GTKDKRSVSTQRVTVFKQ+A+
Sbjct: 224  EHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQAS 283

Query: 712  KLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNG 891
            KLAALN+RL GIKVG+FC+V EGL+LGQL GNRFTITLR + A++E+ I+ SA +L K+G
Sbjct: 284  KLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSAESLGKDG 343

Query: 892  FINYFGLQRFGSSSIATHLIGAALLRGEWKAAVGMILDPREGEKDVTRKIREYYKESGDV 1071
            FINYFGLQRFGS S+ TH +GAALL+GEWK A             V    REYYKE+GD+
Sbjct: 344  FINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ECSNAWHVVNDAREYYKETGDI 397

Query: 1072 EGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRI 1251
            +GTLRQLPR++VAERAIL C +KCPGNYLQAL  IPRTLRMM+VHSYQSYLWN+AAS+R+
Sbjct: 398  DGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRV 457

Query: 1252 QKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDSGNDTQVDC-HLDDISITDLSEVKS 1428
             KYG  QVVLGDLV  K  + +K M  S L  E +  ++  +DC  +DD ++ DL   +S
Sbjct: 458  TKYGTSQVVLGDLVSTK-VDAEKRMVDS-LTSEHNESSEEALDCDQVDDTAVVDLPAERS 515

Query: 1429 MSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSK 1608
              VK +  ED+ A  Y   DIVLPLPGSR+ YP NDI EIYHDLAKKDGISLTES H  K
Sbjct: 516  DLVKVVSIEDLEAGTYLTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTESIHGVK 575

Query: 1609 EFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKE 1788
            EFS+T+MTG YRRVFQKP DFEWELL Y D N PLAETD D I+    P   V  ++E E
Sbjct: 576  EFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIT-VYKPVDKVGSAEEIE 634

Query: 1789 QIKCQADCDNEIELVAGTGETKSDIQIEEESLAAASKTQESEMALKLSFTLPASCYATMA 1968
                ++D  N  E      + ++D + E+E       +++++MALK++ TLP+SCYATMA
Sbjct: 635  DEPLKSD-TNPHESCETNLKDQTDSK-EDEKDTRNPDSEQTQMALKMALTLPSSCYATMA 692

Query: 1969 IRELLKTSTSVAFHKALN 2022
            IRELLKTSTSVA+HK LN
Sbjct: 693  IRELLKTSTSVAYHKTLN 710