BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00010551
         (857 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006360517.1| PREDICTED: RNA-binding protein Nova-2-like [...   318   1e-84
ref|XP_006345844.1| PREDICTED: RNA-binding protein Nova-2-like i...   317   3e-84
ref|XP_004250025.1| PREDICTED: RNA-binding protein Nova-2-like [...   315   1e-83
ref|XP_006345845.1| PREDICTED: RNA-binding protein Nova-2-like i...   313   7e-83
ref|XP_004239711.1| PREDICTED: RNA-binding protein Nova-1-like [...   311   2e-82
emb|CBI31382.3| unnamed protein product [Vitis vinifera]              305   1e-80
ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [...   304   2e-80
ref|XP_006378792.1| hypothetical protein POPTR_0010s23710g [Popu...   300   6e-79
ref|XP_002532622.1| Far upstream element-binding protein, putati...   300   6e-79
gb|EMJ19926.1| hypothetical protein PRUPE_ppa009068mg [Prunus pe...   291   2e-76
gb|EOY18873.1| Binding to TOMV RNA 1L (long form) isoform 1 [The...   287   3e-75
ref|XP_002316405.1| hypothetical protein POPTR_0010s23710g [Popu...   287   3e-75
gb|EOY18878.1| Binding to TOMV RNA 1L (long form) isoform 6 [The...   284   3e-74
ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [...   284   3e-74
ref|XP_004496142.1| PREDICTED: RNA-binding protein Nova-2-like i...   281   2e-73
gb|EMJ19927.1| hypothetical protein PRUPE_ppa009068mg [Prunus pe...   279   8e-73
ref|XP_006288155.1| hypothetical protein CARUB_v10001394mg [Caps...   277   4e-72
ref|XP_006398901.1| hypothetical protein EUTSA_v10014068mg [Eutr...   275   1e-71
ref|NP_196063.1| TOMV RNA binding protein [Arabidopsis thaliana]...   275   1e-71
gb|EOY18877.1| Binding to TOMV RNA 1L (long form) isoform 5 [The...   275   2e-71

>ref|XP_006360517.1| PREDICTED: RNA-binding protein Nova-2-like [Solanum tuberosum]
          Length = 328

 Score =  318 bits (816), Expect = 1e-84
 Identities = 164/242 (67%), Positives = 188/242 (77%), Gaps = 6/242 (2%)
 Frame = +1

Query: 148 MSMEENKSAYSAASPEVQQNQSPPRESSPPP---DNEEKVTHLRFLLSNAEAGSVIGKGG 318
           M+ME    +   +S E Q  QS PR+S PPP   D+EEK T+++FLLSNAEAGS+IGKGG
Sbjct: 1   MAMEGGAESNYNSSTESQLEQSSPRKSPPPPPSQDHEEKATYVKFLLSNAEAGSIIGKGG 60

Query: 319 STINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDG 498
           STI + QS+SGARIQLSRN+E FPGT DRI+MVSG +DDILKAVDLIL KL+DEFY +DG
Sbjct: 61  STITEFQSRSGARIQLSRNYEVFPGTPDRIVMVSGFLDDILKAVDLILGKLMDEFYAEDG 120

Query: 499 GETVPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVT 678
           GE  P SK RLVVPNSSCGG+IGKGG+ I+S IEDSRA IKISPQD  +PGLHDR+VTVT
Sbjct: 121 GEVDPRSKFRLVVPNSSCGGIIGKGGATIKSFIEDSRAGIKISPQDYNFPGLHDRIVTVT 180

Query: 679 GALAEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYG---PNGAGVKYQNNRFP 849
           G L EQMRA+ELIL KL ED +Y QS N PF YA  Y GMNYG   PN  G +Y NNR  
Sbjct: 181 GTLEEQMRAIELILFKLAEDPHYMQSMNAPFQYAAVYVGMNYGYGPPNRVGGRYPNNRQQ 240

Query: 850 NK 855
           NK
Sbjct: 241 NK 242


>ref|XP_006345844.1| PREDICTED: RNA-binding protein Nova-2-like isoform X1 [Solanum
           tuberosum]
          Length = 327

 Score =  317 bits (813), Expect = 3e-84
 Identities = 161/241 (66%), Positives = 197/241 (81%), Gaps = 5/241 (2%)
 Frame = +1

Query: 148 MSME-ENKSAYSAASPEVQQNQSPPRES-SPPP--DNEEKVTHLRFLLSNAEAGSVIGKG 315
           M+ME   +S Y++++  +Q++ S PR+S SPPP  D+EE    ++FLLSNAEAGS+IGKG
Sbjct: 1   MAMEGAAQSEYNSSTEGIQEHSSSPRKSQSPPPSSDHEENKISIKFLLSNAEAGSIIGKG 60

Query: 316 GSTINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQD 495
           GSTI+D Q++SGARIQLSRN E+FPGT DRI+MVSG++DD+LKAVDLIL+KLLDE YV+D
Sbjct: 61  GSTISDFQARSGARIQLSRNNEFFPGTMDRIVMVSGSIDDVLKAVDLILNKLLDESYVED 120

Query: 496 GGETVPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTV 675
           GG+  P SK+RLVVPNSSCGG+IGKGGS+I+S IEDSRA IKI PQD  +PGLHDR+V V
Sbjct: 121 GGDVGPRSKVRLVVPNSSCGGIIGKGGSVIKSFIEDSRAGIKILPQDENFPGLHDRIVIV 180

Query: 676 TGALAEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYG-PNGAGVKYQNNRFPN 852
            G L EQMRA+ELIL KL ED +Y Q+ N PFPYA AY GMNYG PNG G +Y NNR+ N
Sbjct: 181 IGTLGEQMRAIELILYKLAEDTHYVQNMNAPFPYAAAYLGMNYGPPNGIGGRYPNNRYQN 240

Query: 853 K 855
           K
Sbjct: 241 K 241


>ref|XP_004250025.1| PREDICTED: RNA-binding protein Nova-2-like [Solanum lycopersicum]
          Length = 328

 Score =  315 bits (807), Expect = 1e-83
 Identities = 162/242 (66%), Positives = 187/242 (77%), Gaps = 6/242 (2%)
 Frame = +1

Query: 148 MSMEENKSAYSAASPEVQQNQSPPRESSPP---PDNEEKVTHLRFLLSNAEAGSVIGKGG 318
           M+ME    +   +S E Q  QS PR+S PP    D+EEK T+++FLLSNAEAGS+IGKGG
Sbjct: 1   MAMEGGAESNYNSSTESQLEQSSPRKSPPPLPSQDHEEKATYVKFLLSNAEAGSIIGKGG 60

Query: 319 STINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDG 498
           STI + QS+SGARIQLSRN+E FPGT DRI+MVSG +DDILKAVDLIL KL+DEFY +DG
Sbjct: 61  STITEFQSRSGARIQLSRNYEVFPGTPDRIVMVSGFLDDILKAVDLILGKLMDEFYAEDG 120

Query: 499 GETVPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVT 678
           G+  P SK RLVVPNSSCGG+IGKGG+ I+S IEDSRA IKISPQD  +PGLHDR+VTVT
Sbjct: 121 GDVDPRSKFRLVVPNSSCGGIIGKGGATIKSFIEDSRAGIKISPQDYNFPGLHDRIVTVT 180

Query: 679 GALAEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYG---PNGAGVKYQNNRFP 849
           G L EQMRA+ELIL KL +D YY QS N PF YA  Y GMNYG   PN  G +Y NNR  
Sbjct: 181 GTLEEQMRAIELILFKLADDPYYMQSMNAPFQYAAVYVGMNYGYGPPNRVGGRYPNNRQQ 240

Query: 850 NK 855
           NK
Sbjct: 241 NK 242


>ref|XP_006345845.1| PREDICTED: RNA-binding protein Nova-2-like isoform X2 [Solanum
           tuberosum]
          Length = 326

 Score =  313 bits (801), Expect = 7e-83
 Identities = 161/241 (66%), Positives = 197/241 (81%), Gaps = 5/241 (2%)
 Frame = +1

Query: 148 MSME-ENKSAYSAASPEVQQNQSPPRES-SPPP--DNEEKVTHLRFLLSNAEAGSVIGKG 315
           M+ME   +S Y++++  +Q++ S PR+S SPPP  D+EE    ++FLLSNAEAGS+IGKG
Sbjct: 1   MAMEGAAQSEYNSSTEGIQEHSSSPRKSQSPPPSSDHEENKISIKFLLSNAEAGSIIGKG 60

Query: 316 GSTINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQD 495
           GSTI+D Q++SGARIQLSRN E+FPGT DRI+MVSG++DD+LKAVDLIL+KLLDE YV+D
Sbjct: 61  GSTISDFQARSGARIQLSRNNEFFPGTMDRIVMVSGSIDDVLKAVDLILNKLLDESYVED 120

Query: 496 GGETVPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTV 675
           GG+  P SK+RLVVPNSSCGG+IGKGGS+I+S IEDSRA IKI PQD  +PGLHDR+V V
Sbjct: 121 GGDVGPRSKVRLVVPNSSCGGIIGKGGSVIKSFIEDSRAGIKILPQDENFPGLHDRIVIV 180

Query: 676 TGALAEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYG-PNGAGVKYQNNRFPN 852
            G L EQMRA+ELIL KL ED +Y Q+ N PFPYA AY GMNYG PNG G +Y NNR+ N
Sbjct: 181 IGTLGEQMRAIELILYKLAEDTHYVQNMNAPFPYA-AYLGMNYGPPNGIGGRYPNNRYQN 239

Query: 853 K 855
           K
Sbjct: 240 K 240


>ref|XP_004239711.1| PREDICTED: RNA-binding protein Nova-1-like [Solanum lycopersicum]
          Length = 328

 Score =  311 bits (797), Expect = 2e-82
 Identities = 160/242 (66%), Positives = 196/242 (80%), Gaps = 6/242 (2%)
 Frame = +1

Query: 148 MSME-ENKSAYSAASPEVQQNQSPPRES-SPPP--DNEEKVTHLRFLLSNAEAGSVIGKG 315
           M+ME   +S Y++++  VQ++ S PR+S SPPP  D++E    ++FLLSNAEAGS+IGKG
Sbjct: 1   MAMEGAAQSEYNSSTEGVQEHSSSPRKSQSPPPSTDHDENKISIKFLLSNAEAGSIIGKG 60

Query: 316 GSTINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQD 495
           GSTI+D Q++SGARIQLSRN E+FPGT DRI+MVSG +DD+LKAVDL+L+KLLDE YV+D
Sbjct: 61  GSTISDFQARSGARIQLSRNNEFFPGTMDRIVMVSGPIDDVLKAVDLVLNKLLDESYVED 120

Query: 496 GGETVPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTV 675
           GG+  P SK+RLVVPNSSCGG+IGKGGS+I+S IEDSRA IKI PQD  +PGLHDR+V V
Sbjct: 121 GGDVGPRSKVRLVVPNSSCGGIIGKGGSVIKSFIEDSRAGIKILPQDENFPGLHDRIVIV 180

Query: 676 TGALAEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYG-PNGA-GVKYQNNRFP 849
            G L EQMRA+ELIL KL ED +Y Q+ N PFPYA AY GMNYG PNG  G +Y NNR+ 
Sbjct: 181 IGTLGEQMRAIELILYKLAEDAHYVQNMNAPFPYAAAYLGMNYGPPNGVIGGRYPNNRYQ 240

Query: 850 NK 855
           NK
Sbjct: 241 NK 242


>emb|CBI31382.3| unnamed protein product [Vitis vinifera]
          Length = 357

 Score =  305 bits (781), Expect = 1e-80
 Identities = 159/235 (67%), Positives = 188/235 (80%), Gaps = 1/235 (0%)
 Frame = +1

Query: 142 KIMSMEENKSAYSAASPEVQ-QNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGG 318
           +I  ME  +SAY  +SPEV  +  SPPR  SP  D  EK T++RFL+SNA AGSVIGKGG
Sbjct: 45  QISFMESPESAY-VSSPEVPPKRSSPPR--SPTSDFMEKSTYIRFLVSNAAAGSVIGKGG 101

Query: 319 STINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDG 498
           STIND QSQSGARIQLSRN E+FPGTSDRIIM+SG  ++I+KA++LIL+KLL E + +DG
Sbjct: 102 STINDFQSQSGARIQLSRNHEFFPGTSDRIIMISGATNEIIKAMELILAKLLSEMHTEDG 161

Query: 499 GETVPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVT 678
            E  P SK+RL+VPNSSCGG+IGKGGS I+S IEDS+ASIKISPQDN Y GL DRLVT+ 
Sbjct: 162 DEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQASIKISPQDNNYLGLTDRLVTLM 221

Query: 679 GALAEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           G+L EQMRA++LIL KL ED +Y Q  N PF YA AYN MNYGPNGAG K+QNN+
Sbjct: 222 GSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPNGAGGKFQNNK 276


>ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera]
          Length = 309

 Score =  304 bits (779), Expect = 2e-80
 Identities = 158/231 (68%), Positives = 186/231 (80%), Gaps = 1/231 (0%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQ-QNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIN 330
           ME  +SAY  +SPEV  +  SPPR  SP  D  EK T++RFL+SNA AGSVIGKGGSTIN
Sbjct: 1   MESPESAY-VSSPEVPPKRSSPPR--SPTSDFMEKSTYIRFLVSNAAAGSVIGKGGSTIN 57

Query: 331 DIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETV 510
           D QSQSGARIQLSRN E+FPGTSDRIIM+SG  ++I+KA++LIL+KLL E + +DG E  
Sbjct: 58  DFQSQSGARIQLSRNHEFFPGTSDRIIMISGATNEIIKAMELILAKLLSEMHTEDGDEAD 117

Query: 511 PESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALA 690
           P SK+RL+VPNSSCGG+IGKGGS I+S IEDS+ASIKISPQDN Y GL DRLVT+ G+L 
Sbjct: 118 PRSKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQASIKISPQDNNYLGLTDRLVTLMGSLE 177

Query: 691 EQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           EQMRA++LIL KL ED +Y Q  N PF YA AYN MNYGPNGAG K+QNN+
Sbjct: 178 EQMRAIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPNGAGGKFQNNK 228


>ref|XP_006378792.1| hypothetical protein POPTR_0010s23710g [Populus trichocarpa]
           gi|550330463|gb|ERP56589.1| hypothetical protein
           POPTR_0010s23710g [Populus trichocarpa]
          Length = 313

 Score =  300 bits (767), Expect = 6e-79
 Identities = 149/230 (64%), Positives = 183/230 (79%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  Q +SPP  +SPP D+EEK T+ RFL+SNA AGSVIGKGG+TI D
Sbjct: 1   MESTESSY-VSSPEQPQKRSPPPPASPPSDSEEKPTYTRFLVSNAAAGSVIGKGGATITD 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QSQSGARIQLSRN+E+FPGTSDRIIMVSG +DD+LKAV+LI++KLL E   +DG E  P
Sbjct: 60  FQSQSGARIQLSRNYEFFPGTSDRIIMVSGGIDDVLKAVELIIAKLLSEIPAEDGDEAEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
             ++RLVVPNS+CG +IGKGGSII+S IE+S A IKISP D  + GL DRLVTVTG L E
Sbjct: 120 RMRVRLVVPNSACGSIIGKGGSIIKSFIEESHAGIKISPLDTKFFGLTDRLVTVTGTLEE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           QM A++LIL KL +D +Y Q+ + PF YA AYN MN+GPNGA VK+Q+N+
Sbjct: 180 QMHAIDLILSKLTDDPHYSQTMHAPFSYAAAYNSMNHGPNGAAVKFQHNK 229


>ref|XP_002532622.1| Far upstream element-binding protein, putative [Ricinus communis]
           gi|223527642|gb|EEF29753.1| Far upstream element-binding
           protein, putative [Ricinus communis]
          Length = 314

 Score =  300 bits (767), Expect = 6e-79
 Identities = 146/230 (63%), Positives = 185/230 (80%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y ++     + +SPP   SP  D+ EK T++RFL+SNA AGSVIGKGG+TI D
Sbjct: 1   MESTESSYVSSPEAPPRKRSPPPPKSPTSDSVEKPTYVRFLVSNAAAGSVIGKGGATITD 60

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QSQSGARIQLSRN+E+FPGTSDRII++SG +DD+LK V+L+L+KLL E + +DG +  P
Sbjct: 61  FQSQSGARIQLSRNYEFFPGTSDRIILISGILDDVLKGVELVLAKLLSELHTEDGDDVDP 120

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RLVVPNSSCG +IGKGGSII+S IE+S+A IKISPQDN + GL+DRLVTVTG L E
Sbjct: 121 RTKVRLVVPNSSCGSIIGKGGSIIKSFIEESQAGIKISPQDNNFYGLNDRLVTVTGTLEE 180

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           QMRA++LIL KL +D +Y Q+ + PF YAVAYN MNYG NGAG K+QNN+
Sbjct: 181 QMRAIDLILSKLYDDPHYVQTMHAPFSYAVAYNSMNYGANGAGGKFQNNK 230


>gb|EMJ19926.1| hypothetical protein PRUPE_ppa009068mg [Prunus persica]
          Length = 286

 Score =  291 bits (745), Expect = 2e-76
 Identities = 150/231 (64%), Positives = 182/231 (78%), Gaps = 1/231 (0%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  + +S P   SP  D  EK T++RFL+SNA AGSVIGKGG+TI D
Sbjct: 1   MESTESSY-VSSPEAPRRRSSPPPKSPASDTMEKPTYVRFLVSNAAAGSVIGKGGATITD 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QSQSGARIQLSRN E+FPGT+DRIIMVSG++++ILKAVDL+L+KLL E Y ++  +  P
Sbjct: 60  FQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAVDLVLAKLLSELYSEETDDVEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RLVVPNSSCGG+IGKGGS I+S IE S+A IKISPQDN Y GL+DRLVTVTG L E
Sbjct: 120 RTKLRLVVPNSSCGGIIGKGGSTIKSFIEGSQAGIKISPQDNNYFGLNDRLVTVTGNLDE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYG-PNGAGVKYQNNR 843
           QMRAV+LI+ KL ED +Y QS N PF Y  AYN M+YG PNG G K+QNN+
Sbjct: 180 QMRAVDLIVSKLSEDPHYTQSMNAPFSYPAAYNAMSYGPPNGTGGKFQNNK 230


>gb|EOY18873.1| Binding to TOMV RNA 1L (long form) isoform 1 [Theobroma cacao]
           gi|508726978|gb|EOY18875.1| Binding to TOMV RNA 1L (long
           form) isoform 1 [Theobroma cacao]
           gi|508726979|gb|EOY18876.1| Binding to TOMV RNA 1L (long
           form) isoform 1 [Theobroma cacao]
          Length = 313

 Score =  287 bits (735), Expect = 3e-75
 Identities = 141/230 (61%), Positives = 183/230 (79%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  + +SPP   SP  +  EK T++RFL+SNA AGSVIGKGGSTI +
Sbjct: 1   MESTESSY-VSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITE 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QS+SGARIQLSRN E+FPGTSDRIIM+SGT+D++LKA++LIL+KLL+E  ++D  +  P
Sbjct: 60  FQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RL+VPNSSCG +IGKGG+ I+S IEDS+A IKISPQDN + GL+DRLVT+TG L E
Sbjct: 120 RTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           QMRA++LIL KL ED +Y Q+ + PF YA  YN M+Y  NGAG K+QN++
Sbjct: 180 QMRAIDLILSKLSEDPHYLQAMHAPFSYAATYNSMSYPSNGAGGKFQNHK 229


>ref|XP_002316405.1| hypothetical protein POPTR_0010s23710g [Populus trichocarpa]
           gi|222865445|gb|EEF02576.1| hypothetical protein
           POPTR_0010s23710g [Populus trichocarpa]
          Length = 334

 Score =  287 bits (735), Expect = 3e-75
 Identities = 149/251 (59%), Positives = 183/251 (72%), Gaps = 21/251 (8%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  Q +SPP  +SPP D+EEK T+ RFL+SNA AGSVIGKGG+TI D
Sbjct: 1   MESTESSY-VSSPEQPQKRSPPPPASPPSDSEEKPTYTRFLVSNAAAGSVIGKGGATITD 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QSQSGARIQLSRN+E+FPGTSDRIIMVSG +DD+LKAV+LI++KLL E   +DG E  P
Sbjct: 60  FQSQSGARIQLSRNYEFFPGTSDRIIMVSGGIDDVLKAVELIIAKLLSEIPAEDGDEAEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
             ++RLVVPNS+CG +IGKGGSII+S IE+S A IKISP D  + GL DRLVTVTG L E
Sbjct: 120 RMRVRLVVPNSACGSIIGKGGSIIKSFIEESHAGIKISPLDTKFFGLTDRLVTVTGTLEE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYA---------------------VAYNGMNYGP 810
           QM A++LIL KL +D +Y Q+ + PF YA                      AYN MN+GP
Sbjct: 180 QMHAIDLILSKLTDDPHYSQTMHAPFSYAGVFFSGFDGIQYACVLPYVATAAYNSMNHGP 239

Query: 811 NGAGVKYQNNR 843
           NGA VK+Q+N+
Sbjct: 240 NGAAVKFQHNK 250


>gb|EOY18878.1| Binding to TOMV RNA 1L (long form) isoform 6 [Theobroma cacao]
          Length = 314

 Score =  284 bits (727), Expect = 3e-74
 Identities = 142/231 (61%), Positives = 184/231 (79%), Gaps = 1/231 (0%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  + +SPP   SP  +  EK T++RFL+SNA AGSVIGKGGSTI +
Sbjct: 1   MESTESSY-VSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITE 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QS+SGARIQLSRN E+FPGTSDRIIM+SGT+D++LKA++LIL+KLL+E  ++D  +  P
Sbjct: 60  FQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RL+VPNSSCG +IGKGG+ I+S IEDS+A IKISPQDN + GL+DRLVT+TG L E
Sbjct: 120 RTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYAVA-YNGMNYGPNGAGVKYQNNR 843
           QMRA++LIL KL ED +Y Q+ + PF YA A YN M+Y  NGAG K+QN++
Sbjct: 180 QMRAIDLILSKLSEDPHYLQAMHAPFSYAAATYNSMSYPSNGAGGKFQNHK 230


>ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
           gi|449527683|ref|XP_004170839.1| PREDICTED: RNA-binding
           protein Nova-2-like [Cucumis sativus]
          Length = 326

 Score =  284 bits (726), Expect = 3e-74
 Identities = 141/232 (60%), Positives = 180/232 (77%), Gaps = 2/232 (0%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE    +SPP   SP  DN EK T++RFL+SNA AGSVIGKGGSTIND
Sbjct: 1   MESTESSY-VSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTIND 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QSQSGARIQLSRN E+FPGT+DRIIMVSG++++ILKA++L+L+KLL E + ++G +  P
Sbjct: 60  FQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RL+VP+SSCG +IGKGGS I+S IEDS+A IKISPQDN Y    DRLVT++G + E
Sbjct: 120 RTKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGV--KYQNNR 843
           QMRA +LI+ KL ED +Y QS N PF Y  ++N MNYG NG G   ++QNN+
Sbjct: 180 QMRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNGGGTGGRFQNNK 231


>ref|XP_004496142.1| PREDICTED: RNA-binding protein Nova-2-like isoform X2 [Cicer
           arietinum]
          Length = 315

 Score =  281 bits (719), Expect = 2e-73
 Identities = 144/232 (62%), Positives = 182/232 (78%), Gaps = 2/232 (0%)
 Frame = +1

Query: 154 MEENKSAY--SAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTI 327
           ME  +S+Y  S   P  Q+  SPP +S    D+ EK T++RFL+SN+ AGSVIGKGGSTI
Sbjct: 1   MESTESSYVSSPEGPRKQRATSPPPKSPSQDDSVEKPTYVRFLVSNSAAGSVIGKGGSTI 60

Query: 328 NDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGET 507
            D QSQSGARIQLSRN E+FPGT+DRIIMVSG +++IL+AV+LILSKLL E + +D  + 
Sbjct: 61  TDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEILRAVELILSKLLTELHSEDDNDV 120

Query: 508 VPESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGAL 687
            P++K+RL+VPN SCGG+IGKGG+ IRS IEDS+A IKISPQDN Y G +DR+V+VTG L
Sbjct: 121 EPKTKVRLIVPNGSCGGIIGKGGATIRSFIEDSQAGIKISPQDNSYYGQNDRIVSVTGTL 180

Query: 688 AEQMRAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
            EQMRAV+LI+ KL ED +Y QS N+PF Y+ AYN +NY PNGA  K+QN++
Sbjct: 181 DEQMRAVDLIVSKLAEDPHYSQSMNSPFSYS-AYNSVNYRPNGAAGKFQNSK 231


>gb|EMJ19927.1| hypothetical protein PRUPE_ppa009068mg [Prunus persica]
          Length = 307

 Score =  279 bits (714), Expect = 8e-73
 Identities = 150/252 (59%), Positives = 182/252 (72%), Gaps = 22/252 (8%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  + +S P   SP  D  EK T++RFL+SNA AGSVIGKGG+TI D
Sbjct: 1   MESTESSY-VSSPEAPRRRSSPPPKSPASDTMEKPTYVRFLVSNAAAGSVIGKGGATITD 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QSQSGARIQLSRN E+FPGT+DRIIMVSG++++ILKAVDL+L+KLL E Y ++  +  P
Sbjct: 60  FQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAVDLVLAKLLSELYSEETDDVEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RLVVPNSSCGG+IGKGGS I+S IE S+A IKISPQDN Y GL+DRLVTVTG L E
Sbjct: 120 RTKLRLVVPNSSCGGIIGKGGSTIKSFIEGSQAGIKISPQDNNYFGLNDRLVTVTGNLDE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPY---------------------AVAYNGMNYG- 807
           QMRAV+LI+ KL ED +Y QS N PF Y                       AYN M+YG 
Sbjct: 180 QMRAVDLIVSKLSEDPHYTQSMNAPFSYPGVFFSGFHGIPYTYVLPSVATAAYNAMSYGP 239

Query: 808 PNGAGVKYQNNR 843
           PNG G K+QNN+
Sbjct: 240 PNGTGGKFQNNK 251


>ref|XP_006288155.1| hypothetical protein CARUB_v10001394mg [Capsella rubella]
           gi|482556861|gb|EOA21053.1| hypothetical protein
           CARUB_v10001394mg [Capsella rubella]
          Length = 282

 Score =  277 bits (708), Expect = 4e-72
 Identities = 133/228 (58%), Positives = 174/228 (76%)
 Frame = +1

Query: 160 ENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTINDIQ 339
           E+  +Y+A SPE    +SP    S   D+ EK TH+RFL+SNA AGSVIGKGGSTI + Q
Sbjct: 2   ESTESYAAGSPEELTKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQ 61

Query: 340 SQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVPES 519
           ++SGARIQLSRN E+FPGT+DRIIM+SG++ +++  ++LIL KL  E + +DG E  P  
Sbjct: 62  AKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPRR 121

Query: 520 KIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAEQM 699
           +IRLVVPNSSCGG+IGKGG+ I+S IE+S+A IKISP DN Y GL DRLVT++G   EQM
Sbjct: 122 RIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTFEEQM 181

Query: 700 RAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           RA++LIL KL ED +Y Q+ ++P+ YA  YN +NY PNG+G KYQN++
Sbjct: 182 RAIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHK 229



 Score = 73.9 bits (180), Expect = 7e-11
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 27/160 (16%)
 Frame = +1

Query: 265 LRFLLSNAEAGSVIGKGGSTINDIQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILK 444
           +R ++ N+  G +IGKGG+TI     +S A I++S     + G SDR++ +SGT ++ ++
Sbjct: 123 IRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTFEEQMR 182

Query: 445 AVDLILSKLL-DEFYVQD---------------------GGE-----TVPESKIRLVVPN 543
           A+DLIL+KL  D+ Y Q+                     GG+       P + + + V +
Sbjct: 183 AIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHKEEPSNTVTIGVSD 242

Query: 544 SSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDR 663
              G ++G+GG  I  + + + A IKIS + ++  G  DR
Sbjct: 243 EHIGLVLGRGGRNIMEITQMTGARIKISDRGDFISGTSDR 282


>ref|XP_006398901.1| hypothetical protein EUTSA_v10014068mg [Eutrema salsugineum]
           gi|567170303|ref|XP_006398903.1| hypothetical protein
           EUTSA_v10014068mg [Eutrema salsugineum]
           gi|557099991|gb|ESQ40354.1| hypothetical protein
           EUTSA_v10014068mg [Eutrema salsugineum]
           gi|557099993|gb|ESQ40356.1| hypothetical protein
           EUTSA_v10014068mg [Eutrema salsugineum]
          Length = 313

 Score =  275 bits (704), Expect = 1e-71
 Identities = 132/228 (57%), Positives = 174/228 (76%)
 Frame = +1

Query: 160 ENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTINDIQ 339
           E+  +Y+AASPE    +SP    S   D+ EK TH+RFL+SNA AGSVIGKGGSTI + Q
Sbjct: 2   ESTESYAAASPEELTKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQ 61

Query: 340 SQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVPES 519
           ++SGARIQLSRN E+FPGT+DRIIM+SG++ +++  ++LIL KL  E + +DG +  P  
Sbjct: 62  AKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNDVEPRR 121

Query: 520 KIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAEQM 699
           +IRLVVPNSSCGG+IGKGG+ I+S IE+S+A IKISP DN Y GL DRLVT++G   EQM
Sbjct: 122 RIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTFEEQM 181

Query: 700 RAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           RA++LIL KL  D +Y Q+ ++P+ YA  YN +NY PNG+G KYQN++
Sbjct: 182 RAIDLILAKLTSDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHK 229


>ref|NP_196063.1| TOMV RNA binding protein [Arabidopsis thaliana]
           gi|14030641|gb|AAK52995.1|AF375411_1 AT5g04430/T32M21_30
           [Arabidopsis thaliana] gi|7406447|emb|CAB85549.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|21554568|gb|AAM63617.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|23507775|gb|AAN38691.1|
           At5g04430/T32M21_30 [Arabidopsis thaliana]
           gi|332003361|gb|AED90744.1| TOMV RNA binding protein
           [Arabidopsis thaliana]
          Length = 313

 Score =  275 bits (704), Expect = 1e-71
 Identities = 132/228 (57%), Positives = 174/228 (76%)
 Frame = +1

Query: 160 ENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTINDIQ 339
           E+  +Y+A SPE    +SP    S   D+ EK TH+RFL+SNA AGSVIGKGGSTI + Q
Sbjct: 2   ESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQ 61

Query: 340 SQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVPES 519
           ++SGARIQLSRN E+FPGT+DRIIM+SG++ +++  ++LIL KL  E + +DG E  P  
Sbjct: 62  AKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPRR 121

Query: 520 KIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAEQM 699
           +IRLVVPNSSCGG+IGKGG+ I+S IE+S+A IKISP DN + GL DRLVT++G   EQM
Sbjct: 122 RIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQM 181

Query: 700 RAVELILLKLVEDQYYHQSGNTPFPYAVAYNGMNYGPNGAGVKYQNNR 843
           RA++LIL KL ED +Y Q+ ++P+ YA  YN +NY PNG+G KYQN++
Sbjct: 182 RAIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHK 229


>gb|EOY18877.1| Binding to TOMV RNA 1L (long form) isoform 5 [Theobroma cacao]
          Length = 285

 Score =  275 bits (703), Expect = 2e-71
 Identities = 141/251 (56%), Positives = 183/251 (72%), Gaps = 21/251 (8%)
 Frame = +1

Query: 154 MEENKSAYSAASPEVQQNQSPPRESSPPPDNEEKVTHLRFLLSNAEAGSVIGKGGSTIND 333
           ME  +S+Y  +SPE  + +SPP   SP  +  EK T++RFL+SNA AGSVIGKGGSTI +
Sbjct: 1   MESTESSY-VSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITE 59

Query: 334 IQSQSGARIQLSRNFEYFPGTSDRIIMVSGTVDDILKAVDLILSKLLDEFYVQDGGETVP 513
            QS+SGARIQLSRN E+FPGTSDRIIM+SGT+D++LKA++LIL+KLL+E  ++D  +  P
Sbjct: 60  FQSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEP 119

Query: 514 ESKIRLVVPNSSCGGLIGKGGSIIRSLIEDSRASIKISPQDNYYPGLHDRLVTVTGALAE 693
            +K+RL+VPNSSCG +IGKGG+ I+S IEDS+A IKISPQDN + GL+DRLVT+TG L E
Sbjct: 120 RTKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDE 179

Query: 694 QMRAVELILLKLVEDQYYHQSGNTPFPYA---------------------VAYNGMNYGP 810
           QMRA++LIL KL ED +Y Q+ + PF YA                       YN M+Y  
Sbjct: 180 QMRAIDLILSKLSEDPHYLQAMHAPFSYAGIFFSGFHGIPYAYVLPSVATATYNSMSYPS 239

Query: 811 NGAGVKYQNNR 843
           NGAG K+QN++
Sbjct: 240 NGAGGKFQNHK 250