BLASTX nr result
ID: Rehmannia23_contig00010545
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00010545
(3449 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1583 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1577 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 1576 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 1561 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1559 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1555 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1528 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1518 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1518 0.0
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise... 1510 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 1506 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1504 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 1498 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1480 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1476 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1475 0.0
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan... 1459 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1430 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 1430 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1423 0.0
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1583 bits (4098), Expect = 0.0
Identities = 777/1119 (69%), Positives = 920/1119 (82%), Gaps = 4/1119 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFP L+ AE VK+FLE +TG GTV ALEVK SK G R +A+VQF N AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS LY+G SYL+AW+ DI+Q PRT+V M+ VTLNFGCQ S +KF+VL +
Sbjct: 61 IIDLASKG--LYYGPSYLKAWEMKTDIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLG-S 116
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
+ VS+KFG G+KK++F L H S +Y+LQLSYENIWQ+VL+ P+GQ A+ LL+QLFGAPRI
Sbjct: 117 KDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L DS +S+F+ETPDDQW+RTTDFTPS IG SS LCL+ G++LPNF +SF +YKES
Sbjct: 177 YKRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKES 236
Query: 722 QDPFRLETGVPFAAN--LALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
+ F L+TG F+ + LALVPIVH P G+ELPY+ILFK+ L+Q GC PG L+ NFF+
Sbjct: 237 MNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 296
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R +I IEHALEKLYY+KECCYDPV WL EQY++Y R+ P SP I+LDDGLVY
Sbjct: 297 LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVY 356
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + ++NFLRVSFVDEEW+K++STDL P+ + G
Sbjct: 357 VRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTG 416
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+ RT +YERILSTL+ G IIG+K+F+FLAFSSSQLRDNS+WMFA GL A+ IR WM
Sbjct: 417 N-GTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 475
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDFR IRNVAKYAARLGQSF SS ETLSVG EVE I D+ +GT Y+FSDGIGKISA
Sbjct: 476 GDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISA 535
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFA RV IKCG + TPS+FQIRYGGYKGVVAVDP SS+KLSLR SMLKY+S N KLDVL
Sbjct: 536 DFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVL 594
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPC+LNRQ++TLLSTLGV D V + KQ EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 595 GWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGE 654
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILKEML CGY PD EPFLSMMLQTFR+SKLLDLR + RIF+P R MMGCLDE+ L
Sbjct: 655 NTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTL 714
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQFSGAGR F+EES+ D+ S +C+++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 715 EYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVD 774
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD DLIPPRQV MDY+PAPT+
Sbjct: 775 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTT 834
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDHDVTIEEVEEYFTNYI+NDSLGIIANAH VFAD+E +MA+S+PC +LA+LFSIAVDF
Sbjct: 835 QLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDF 894
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEV 2875
PKTGVPAEIP LR KEYPDFM+KPDK +Y S ++IGKLF++VK+ P +SI +FT++V
Sbjct: 895 PKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDV 954
Query: 2876 ARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFD 3055
AR+SYD DM VDGF DY+DEAF YK+EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFD
Sbjct: 955 ARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1014
Query: 3056 RRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDH 3235
RRKD EAI AVR LR E R+WFK+ ++ DD AKASAWYHVTYH +WG YN GLKRDH
Sbjct: 1015 RRKDAEAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDH 1074
Query: 3236 YISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRL 3346
+ISFPWCVYD+LI+IKK +R+ ++SL + SR+L
Sbjct: 1075 FISFPWCVYDQLIQIKKAKARKRPVPHLSSLGSQLSRKL 1113
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 1577 bits (4083), Expect = 0.0
Identities = 776/1122 (69%), Positives = 921/1122 (82%), Gaps = 5/1122 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFP L+ AE VK FLE +TG GTV ALEVK SK G R +A+VQF N AEI
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS LY+G SYL+AW+ I+Q PRT+V M+ VTLNFGCQ S +KF+VL +
Sbjct: 61 IIDLASKG--LYYGPSYLKAWEMKTYIVQ-PRTYVQHMDGVTLNFGCQISDKKFAVLG-S 116
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
+ VS+KFG G+KK++F L + S +Y+LQLSYENIWQ+VL+ P+GQ A+ LL+QL GAPRI
Sbjct: 117 KVVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L DS +S+F+ETPDDQW+RTTDFTPS IG SS LCL+ G+RLPNF +SF +YKES
Sbjct: 177 YKRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKES 236
Query: 722 QDPFRLETGVPFAAN---LALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFF 892
+ L+TG F+ + LALVPIVH P G+ELPY+ILFK+ L+Q GC PG L+ NFF
Sbjct: 237 ANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFF 296
Query: 893 RLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLV 1072
+LVDP+R +I IEHALEKLYY+KECCYDPV WL EQY++Y R+ P SP+I+LDDGLV
Sbjct: 297 QLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLV 356
Query: 1073 YVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAA 1252
YV RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K++STDL P+ +
Sbjct: 357 YVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRAST 416
Query: 1253 GDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRW 1432
G+ RT +Y RILSTL+ G +IG+KKF+FLAFSSSQLRDNS+WMFA GL A+ IR W
Sbjct: 417 GN-GVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTW 475
Query: 1433 MGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKIS 1612
MG F+ IRNVAKYAARLGQSF SS ETLSVG EVE I D+ +GT Y+FSDGIGKIS
Sbjct: 476 MGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKIS 535
Query: 1613 ADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDV 1792
ADFARRVA+KCG + TPS FQIRYGGYKGVVAVDP SS+KLSLR SMLKY+S N KLDV
Sbjct: 536 ADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDV 594
Query: 1793 LSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPG 1972
L WSKYQPC+LNRQ++TLLSTLGVKD VF+ KQ EAV QLD IL D L+AQEAL+LMSPG
Sbjct: 595 LGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPG 654
Query: 1973 ENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGI 2152
EN+NILKEML CGY PD EPFLSMMLQTFR+SKLLDLR ++RIF+P R MMGCLDE+
Sbjct: 655 ENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRT 714
Query: 2153 LEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAI 2332
LEYGQVFVQF+G GR FYEES+ D+ ST+C++++EGNVVVAKNPCLHPGD+RVL+A+
Sbjct: 715 LEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAV 774
Query: 2333 DVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPT 2512
DV ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD DL+PPRQ PMDY+PAP+
Sbjct: 775 DVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPS 834
Query: 2513 SRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVD 2692
++LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA+LFSIAVD
Sbjct: 835 TQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVD 894
Query: 2693 FPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 2872
FPKTGVPAEIP LR KEYPDFM+KPDK +Y S ++IGKLF++VKD P +SI +FT +
Sbjct: 895 FPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMD 954
Query: 2873 VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 3052
VAR+SYD DM V+GF DY+DEAF YK+EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 955 VARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTF 1014
Query: 3053 DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 3232
DRRKD +AI AVRSLR E R+WFK+ ++ DD AKASAWYHVTYH +WG YN GLKRD
Sbjct: 1015 DRRKDADAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRD 1074
Query: 3233 HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNL 3352
H+ISFPWC+YD+LI+IKK +R+ ++SL + SR+L L
Sbjct: 1075 HFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSRKLVL 1116
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 1576 bits (4082), Expect = 0.0
Identities = 779/1122 (69%), Positives = 915/1122 (81%), Gaps = 4/1122 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFP L+ AE VK FLE+YTG GTV ALEVK SK G R +A+VQF + A+
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LA+ RLYFGSSYL+AW+ DI+Q R +V +M+ +TLNFGCQ S +KF+VL
Sbjct: 61 IITLANN--RLYFGSSYLKAWEMKTDIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGST 117
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
E VS++FG G+KK F L S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118 E-VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ G+RLPNF++SF Y E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAER 236
Query: 722 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
++ L+TG F + ALVP V PP G+ +PY+ILFK+ LVQ GC+PGP L+ FFR
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R ++ IEHALEKLYYIKECCYDPV WL EQY+ Y R+ P SP+I+LDDGLVY
Sbjct: 297 LVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA GL A+ IR WM
Sbjct: 417 S-GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWM 475
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF I+NVAKYAARLGQSF SS ETLSV E+E I D++ +GT YVFSDGIGKIS
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISG 533
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFA RVA KCG + TPSAFQIRYGGYKGVV VDPDSS+KLSLR SM KY+S+N KLDVL
Sbjct: 534 DFAHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVL 592
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPC+LNRQ+ITLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593 GWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILK ML CGYKPD EPFLSMMLQTFR+SKLLDLR ++RIF+P R MMGCLDE+ L
Sbjct: 653 NTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTL 712
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQF+GAG G F ++ + ++ ST+ N++++GNVVVAKNPCLHPGD+RVLKA++
Sbjct: 713 EYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVN 772
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
VRALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD D+IPPRQV PM+Y PAP+
Sbjct: 773 VRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 832
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA LFSIAVDF
Sbjct: 833 QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEV 2875
PKTGVPAEIP LR KEYPDFMDKPDK SY S R+IGKLFR+VKD AP +SI +FT++V
Sbjct: 893 PKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDV 952
Query: 2876 ARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFD 3055
ARRSYD DMEVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFD
Sbjct: 953 ARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1012
Query: 3056 RRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDH 3235
RRKD EAIS AVR+LR E R+WFK+ N+ DD KASAWYHVTYHP +WG YN GLKR H
Sbjct: 1013 RRKDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAH 1072
Query: 3236 YISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 3355
+ISFPWCVYD+LI+IKKD +R +++SL + S RL L+
Sbjct: 1073 FISFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVLK 1114
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 1561 bits (4042), Expect = 0.0
Identities = 772/1123 (68%), Positives = 914/1123 (81%), Gaps = 5/1123 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFP+L+ AE VK FLE++TG GT+ ALEVK SK G R +A+VQFV+ A+
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS RLYFGSSYL+AW+ DI+Q R +V M+ +TLNFGCQ S +KF+VL
Sbjct: 61 IINLASK--RLYFGSSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGST 117
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
E VS+KFG G+KK F L S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118 E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L +S +S+F+ETPDDQW+RTTDFTPS IG SS LCLQ G+ LPNFQ+SF Y E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236
Query: 722 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
++ L+TG F + ALVP V PP G+ +PY+ILFK+ LVQ GC+PGP L+ FFR
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R ++ IE ALEKLYY+KECCYDPV WL EQY+ Y R+ P SP+I+LDDGLVY
Sbjct: 297 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YST+L PK + G
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 416
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+ RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA GL + IR WM
Sbjct: 417 N-GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWM 475
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF I+NVAKYAARLGQSF SS ETLSV E+E I D++ +GT YVFSDGIGKISA
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFARRVA KCG + TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 534 DFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593 GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGE 652
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR ++RIF+P R MMGCLDE+ L
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQF+GAG F E+ + ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 713 EYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 772
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD D+IPPRQV M+Y PAP+
Sbjct: 773 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDH+VTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA LFSIAVDF
Sbjct: 833 QLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 2872
PKTGVPAEIP LR KEYPDFMDK PDK +Y S R+IGKLFR+VKD AP +SI FT++
Sbjct: 893 PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRD 952
Query: 2873 VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 3052
VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 953 VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTF 1012
Query: 3053 DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 3232
DRRKD EAIS AVR+LR E R+WFK+ N+ DD KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1013 DRRKDAEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072
Query: 3233 HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 3355
H+ISFPWCVYD+LI+IKK+ +R +++SL + S +L L+
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSHKLVLK 1115
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 1559 bits (4037), Expect = 0.0
Identities = 774/1123 (68%), Positives = 912/1123 (81%), Gaps = 5/1123 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFPDL+ AE VK FLE++TG GTV ALEVK SK G R +A+VQFV+ A+
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS RLYFGSSYL+AW+ DI+Q R +V M+ +TLNFGCQ S +KF+VL
Sbjct: 61 IINLASK--RLYFGSSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGST 117
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
E VS+KFG G+KK F L S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118 E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ G+ LPNFQ+SF Y E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236
Query: 722 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
++ L+TG F + ALVP V PP G+ +PY+ILFK+ LVQ GC+PGP L+ NFFR
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFR 296
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R ++ IE ALEKLYY+KECCYDPV WL EQY+ Y R+ P SP+I+LDDGLVY
Sbjct: 297 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVY 356
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+ RT +Y RILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA GL A IR WM
Sbjct: 417 N-GIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWM 475
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF I+NVAKYAARLGQSF SS ETLSV E+E I D++ +GT YVFSDGIGKISA
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFARRVA KCG + TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 534 DFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPCFLNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593 EWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR ++RIF+P R MMGCLDE+ L
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQF+G+G F E+ + ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 713 EYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 772
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD D+IPPRQV M+Y PAP+
Sbjct: 773 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA LFSIAVDF
Sbjct: 833 QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 2872
PKTGVPAEIP LR KEYPDFMDK PDK +Y S R+IGKL+R+VKD AP +S FT++
Sbjct: 893 PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 952
Query: 2873 VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 3052
VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 953 VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1012
Query: 3053 DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 3232
DRRKD EAIS AVR+LR E R+WFK+ N+ DD KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1013 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072
Query: 3233 HYISFPWCVYDKLIKIKKDN--SRRASDMASLEREFSRRLNLR 3355
H+ISFPWCVYD+LI+IKK+ +R +++SL + S +L L+
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKALNRPVLNLSSLRAQLSHKLVLK 1115
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 1555 bits (4026), Expect = 0.0
Identities = 773/1123 (68%), Positives = 912/1123 (81%), Gaps = 5/1123 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFPDL+ AE VK FLE++TG GTV ALEVK SK G R +A+VQFV+ A+
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS RLYFGSSYL+A + D++Q +V M+ +TLNFGCQ S +KF+VL
Sbjct: 61 IINLASK--RLYFGSSYLKAREMETDLVQLWE-YVDHMDGITLNFGCQISDDKFAVLGST 117
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
E VS+KFG G+KK F L S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118 E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ G+ LPNFQ+SF Y E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236
Query: 722 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
++ L+TG F + ALVP V PP G+ +PY+ILFK+ LVQ GC+PGP L+ FFR
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R ++ IE ALEKLYY+KECCYDPV WL EQY+ Y R+ P SP+I+LDDGLVY
Sbjct: 297 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVY 356
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+ RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA GL A IR WM
Sbjct: 417 N-GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWM 475
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF I+NVAKYAARLGQSF SSTETLSV E+E I D++ +GT YVFSDGIGKISA
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFARRVA KCG + TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 534 DFARRVASKCGLQH-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593 GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR K+RIF+P R MMGCLDE+ L
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTL 712
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQF+G+G F E+ + ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 713 EYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 772
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD D+IPPRQV M+Y PAP+
Sbjct: 773 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA L SIAVDF
Sbjct: 833 QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDF 892
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 2872
PKTGVPAEIPP LR KEYPDFMDK PDK +Y S R+IGKL+R+VKD AP +S FT++
Sbjct: 893 PKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 952
Query: 2873 VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 3052
VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 953 VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1012
Query: 3053 DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 3232
DRRKD EAIS AVR+LR E R+WFK+ N+ DD KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1013 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072
Query: 3233 HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 3355
H+ISFPWCVYD+LI+IKK+ +R +++SL + SR+L L+
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSRKLVLK 1115
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1528 bits (3957), Expect = 0.0
Identities = 760/1127 (67%), Positives = 902/1127 (80%), Gaps = 10/1127 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPR-PYARVQFVNISCAE 178
M KTI V GFP +V A+ +K FLE+YTG+GT+ ALE+K + G +A+VQF + AE
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 179 IIMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 358
I+ L ++++G +YL+A + +DII PR F+H M+++TL+FGCQ S E+F VLWK
Sbjct: 61 FIITLCKK--KVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 359 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 538
A +VSVKFG+G++K +F L H S EY+L+LSYENIWQI L +P GQ K LLIQL GAP+
Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 539 IYKKLNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYK 715
IY+K + YF+E PDDQW+R DFTPSC IGQS LCL+LPYG +LPNF+++F +YK
Sbjct: 179 IYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYK 238
Query: 716 ESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
E+ F LE+G ++ NL LVPI+ PP+G LP++ILFK+ LVQ GCL GP LDT+FFR
Sbjct: 239 ENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFR 298
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQP--NSPAISLDDGL 1069
LVDP+RF I +IEHALEKLY++KECCY+PV WL+EQY RT+ ++P SPAISLD GL
Sbjct: 299 LVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQY---RTYVKKPVAGSPAISLDTGL 355
Query: 1070 VYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVA 1249
VYV RVQITP +VYF GPEVNVSNRVLR+Y + +DNFLRVSF+DE +K++ST +SP+++
Sbjct: 356 VYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMS 415
Query: 1250 AGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRR 1429
E +RT +Y RILS L+ GI+IG+KKFDFLAFSSSQLRDNS WMFA GL A IR
Sbjct: 416 K--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRS 473
Query: 1430 WMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKI 1609
WMGDF IRNVAKYAARLGQSFSSS ETL V + E+E I DIE + T YVFSDGIGKI
Sbjct: 474 WMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKI 533
Query: 1610 SADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLD 1789
S A RVAIKCG KS+TPSAFQIRYGGYKGVVAVDP SS KLSLR SM KY+S+NT LD
Sbjct: 534 SPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLD 593
Query: 1790 VLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSP 1969
VL+WSKYQP FLNRQ+ITLLSTLGVKD+VF+ KQR AV QLD IL DP+ AQEAL+LMSP
Sbjct: 594 VLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSP 653
Query: 1970 GENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETG 2149
GEN+N+LKEML CGYKPD EPFLSMMLQTFR++KLL+LR K RIFVP R MMGCLDET
Sbjct: 654 GENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETR 713
Query: 2150 ILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKA 2329
LEYG+VFVQ SG G + +S M + S N+++EG +VVAKNPCLHPGDVRVL A
Sbjct: 714 TLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWA 773
Query: 2330 IDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAP 2509
++V LHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD DLIPP+Q++PMDY+PAP
Sbjct: 774 VNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAP 833
Query: 2510 TSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAV 2689
T LDHDV IEEVEEYFTNYIVNDSLGIIANAHTVFADKE + A +PC ELA+LFSIAV
Sbjct: 834 TKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAV 893
Query: 2690 DFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTK 2869
DFPKTGVPAEIP +LRVKEYPDFM+K DK +YES +IGKLFREVKDIAPH +IRSFT+
Sbjct: 894 DFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTR 953
Query: 2870 EVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKT 3049
+VAR+SYDPDMEV GF DYV +AF YK+EYD KLGNLM+YYGIKTE+EILSG IM+MSK+
Sbjct: 954 DVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKS 1013
Query: 3050 FDRRKDVEAISAAVRSLRNEVRSWFKK-----GNESDDPYAKASAWYHVTYHPDFWGSYN 3214
FDRRKD EAI AV+SLR E R+WF K +E+DD YAKASAWYHVTYHPD+WG YN
Sbjct: 1014 FDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYN 1073
Query: 3215 VGLKRDHYISFPWCVYDKLIKIK-KDNSRRASDMASLEREFSRRLNL 3352
G+ RDH++SFPWCVYDKLI K K S R+ ++SLER S+ L L
Sbjct: 1074 EGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1518 bits (3929), Expect = 0.0
Identities = 748/1132 (66%), Positives = 902/1132 (79%), Gaps = 15/1132 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGP-RPYARVQFVNISCAE 178
MGKTI V GFP V AE VK FLE TG GTV AL+++ K+G R YA VQF A+
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60
Query: 179 IIMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 358
I+ LA + +L++G SYL A D + PRTF+H ME + L+FGC+ S EKF+VLW+
Sbjct: 61 TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120
Query: 359 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 538
+V+V FG GM+K++F+L H EYRL+L YENIW+I L+ P Q K LLIQL GAPR
Sbjct: 121 GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180
Query: 539 IYKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNF 691
I++K V ++F+E PDDQW+RTTDFTPS IGQS+GLC++LPY + LP+F
Sbjct: 181 IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDF 240
Query: 692 QDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGP 871
+++F +YKES+D F LETG ++ +L LVPIV PP G+ LPY ILFK+ LVQ GC+ GP
Sbjct: 241 KENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 300
Query: 872 KLDTNFFRLVDPKR--FDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSP 1045
LD+NF+RLVDP R I IEHAL+KLY++KECCY+P WL +QY KY T R +P+SP
Sbjct: 301 LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 360
Query: 1046 AISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYS 1225
AISLDDGLVYVHRVQ+TP+RVYF GPE+NVSNRVLRH+R +DNFLR+SF+DE+ DK++S
Sbjct: 361 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 420
Query: 1226 TDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNG 1405
TDLSP+ ++ + RT++Y RILSTL+ GI+IG++KF+FLAFSSSQLR++S WMFA G
Sbjct: 421 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 480
Query: 1406 LDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYV 1585
L A IR WMG+FR+IRNVAKYAARLGQSFSSS ETLSV E+E I D++ TKYV
Sbjct: 481 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 540
Query: 1586 FSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKY 1765
FSDGIGK+SA+FAR+VA KCG K PSAFQIRYGGYKGVVA DP SS KLSLR SM KY
Sbjct: 541 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 600
Query: 1766 QSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQ 1945
+SE TKLDVL+WSKYQPCFLNRQ+I+LLSTLG+ D +F+ KQREAV QLD IL DPL+AQ
Sbjct: 601 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 660
Query: 1946 EALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQM 2125
EAL+LMSPGEN+NILKE+L CGYKPD EPFLSMMLQTFR+SKLL+LR K RIF+P R M
Sbjct: 661 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 720
Query: 2126 MGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHP 2305
MGCLDET L YGQVFVQ SGAG + ES++ + + + ++V+G VVVAKNPCLHP
Sbjct: 721 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSL-FSSSRSRQRFIVQGLVVVAKNPCLHP 779
Query: 2306 GDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVS 2485
GDVRVLKA++V ALHHMVDCVVFP +GMRPHPNECSGSDLDGDIYFVCWD +LIPP+Q
Sbjct: 780 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 839
Query: 2486 PMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLEL 2665
PMDY+PA + +LDHDV IE+VEEYFTNYIVNDSLGIIANAHTVFAD+E + A SEPCL+L
Sbjct: 840 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQL 899
Query: 2666 ARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHT 2845
A FSIAVDFPKTGVPAEIPPHL VKEYPDFM+KPDK +YES +IGKLFR VKDIAPHT
Sbjct: 900 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHT 959
Query: 2846 TSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSG 3025
+ IR FTKEVARRSYDPDMEVDGF D++D+A +K YD KLGNLM+YYGIKTEAEIL+G
Sbjct: 960 SCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG 1019
Query: 3026 GIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNES---DDPYAKASAWYHVTYHPD 3196
IMKMSK+F +R+D EAI AVR+LR E R+WFK+ + S DD YAKASAWYHVTYHPD
Sbjct: 1020 SIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPD 1079
Query: 3197 FWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRASDMASLEREFSRRLNL 3352
+WG YN G+ RDH++SFPWCVYD+L++IKKD + + +LE++F + L +
Sbjct: 1080 YWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFRQGLRM 1131
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1518 bits (3929), Expect = 0.0
Identities = 756/1135 (66%), Positives = 901/1135 (79%), Gaps = 18/1135 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRG-PRPYARVQFVNISCAE 178
M KT+ VSGFP A V+ FLE +TG GTV AL+++ + G R YA VQF AE
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 179 IIMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 358
I+ LA+ RL++G SYL A DII PR+F+H ME VTL+FG QTS+EKFS +W
Sbjct: 61 QIISLANP--RLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118
Query: 359 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 538
+VSV FG GM+K+HF L HN EY+L L +ENIWQI L+ P GQT K LLIQL+GAPR
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 539 IYKK--------LNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNF 691
IY++ D + +YFR+ PD+QW+RTTDFTPSC IG SS LCL+LP ++LPNF
Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238
Query: 692 QDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGP 871
++F +YKE++ F LE+G+ F+ N LVPIV P G+ LPY ILF+V LVQ GCL G
Sbjct: 239 NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298
Query: 872 KLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAI 1051
LD F+RLVDP R +R IE+ALEKLY++KECCY+P W NEQY+KY T P SP +
Sbjct: 299 MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358
Query: 1052 SLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTD 1231
SLD GLVYV++VQITP +V+F GPEVNVSNRVLR YR+ +DNFLRVSFVDEE +K++STD
Sbjct: 359 SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418
Query: 1232 LSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLD 1411
+SP+ ++ +E +RT +Y RILSTL+ GI+IG+KKF+FLAFSSSQLR+NS WMFA GL
Sbjct: 419 VSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLT 478
Query: 1412 ADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFS 1591
A IR WMG F IRNVA+YAARLGQSF SSTETLSV E+E I DIE R GT+Y+FS
Sbjct: 479 AADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFS 538
Query: 1592 DGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQS 1771
DGIGKISA+FAR+VAIKCG K TPSAFQIRY GYKGVVAVDP SS KLSLR SM KY+S
Sbjct: 539 DGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYES 598
Query: 1772 ENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEA 1951
ENTKLDVL+ SKYQPCFLNRQ+ITLLSTLGV D+ F+ KQREAV QLD +L DPLRAQEA
Sbjct: 599 ENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEA 658
Query: 1952 LDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMG 2131
L+LMSPGEN+NILKEML CGY+PD EPFLSMMLQTFR+SKLL+LR K RIF+P R MMG
Sbjct: 659 LELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 718
Query: 2132 CLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGD 2311
CLDET LE+GQVFV+FSG+ Y+ S+M + C Y+++G+VVVAKNPCLHPGD
Sbjct: 719 CLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQC-YLIKGSVVVAKNPCLHPGD 777
Query: 2312 VRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPM 2491
+R+LKA+DV ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD +LIP +Q+SPM
Sbjct: 778 LRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPM 837
Query: 2492 DYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELAR 2671
DY+P P +LDHDVTIEEVEEYFTNYIVNDSLG+IANAHT ADKE+ A+SEPC+ELAR
Sbjct: 838 DYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELAR 897
Query: 2672 LFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTS 2851
FSIAVDFPKTGVPAEIP +LR +EYPDFM+KPDK SYES +IGKLFREVKDIAP T+S
Sbjct: 898 KFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSS 957
Query: 2852 IRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGI 3031
IRSFT +VAR+ YDPDMEVDGF DY+D+AF YK+ YD KLGNLMEYYGIKTEAE+LSG
Sbjct: 958 IRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1017
Query: 3032 MKMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKG----NESDDPYAKASAWYHVTYHPD 3196
MKMSK+F +++D EAI AVRSL+ E RSWF +KG +++DD AKASAWYHVTYH +
Sbjct: 1018 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1077
Query: 3197 FWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS---RRASDMASLEREFSRRLNL 3352
+WG YN G+ RDH++SFPWCVYDKLI+IK+ NS RR+ + S+ER+FSR L+L
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132
>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
Length = 1095
Score = 1510 bits (3909), Expect = 0.0
Identities = 743/1112 (66%), Positives = 893/1112 (80%), Gaps = 1/1112 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MG T+ + GFP VPA+ VK+ +E+YTGQGTV+AL+V+ SK GPR YA VQF++ AE+
Sbjct: 1 MGLTVMIFGFPSRVPADSVKQLVERYTGQGTVVALKVEASKSGPRAYAVVQFLDARSAEM 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ A LY+GSSYL+ S ++++NP T + ++QVTL+FGCQ S KFSVLW
Sbjct: 61 IVH---AQNSLYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSC 117
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
V+VKFGT +K + F+L Y LQLSY++IW+ VLYNP KLL IQLFGAPRI
Sbjct: 118 SDVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRKLL-IQLFGAPRI 176
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKE 718
KK+ S +SY+ +DQW+RTTDFT + IGQSSGLCL+ P+G RLP F+D FV++KE
Sbjct: 177 SKKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDDFVYFKE 236
Query: 719 SQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRL 898
++ F L+ G F+ N L PIV PPRGL LPY I+FK+C LVQ GC+PGP+LD NF+R+
Sbjct: 237 KEEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRM 296
Query: 899 VDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYV 1078
V+P+ DIRYIEHALEK++Y+KECCYDPV WL QY +Y+T +P+SP ISL+ GLVYV
Sbjct: 297 VNPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQT--SKPSSPTISLEGGLVYV 354
Query: 1079 HRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGD 1258
RVQITP+RVYF+GPE+NVSNRVLR Y+D +D+FLRVSFVDE+WDK++S LS K G
Sbjct: 355 RRVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIG- 413
Query: 1259 ENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMG 1438
+T++YERILS L+EGI IG+K+FDFLAFSSSQLR+NSLWMFAP+NG+ AD IR+WMG
Sbjct: 414 ---KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMG 470
Query: 1439 DFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISAD 1618
DFR IRNVAKYAARLGQSF SSTETL+V E I DI Y FSDGIGKISAD
Sbjct: 471 DFRSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISAD 530
Query: 1619 FARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLS 1798
FARRVA KC F PSAFQIRYGG+KGVVAVDP S++KLSLRPSM KY+S+NTKLDVLS
Sbjct: 531 FARRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLS 590
Query: 1799 WSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGEN 1978
WSKY PCFLNRQIITLLSTLGV+D VF KQREAVAQLD+ILVDPLRAQE LDLM+PGEN
Sbjct: 591 WSKYLPCFLNRQIITLLSTLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGEN 650
Query: 1979 SNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILE 2158
S+ILKEMLKCGYKPD EPFLSMML+ FRSSKLLDLR K+RIFVP+ARQ+MGCLDETG LE
Sbjct: 651 SHILKEMLKCGYKPDEEPFLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLE 710
Query: 2159 YGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDV 2338
YG+VFVQ SG+ + F+ + D N VV G V VAKNPCLHPGD+RV+KA+DV
Sbjct: 711 YGEVFVQISGSRQRQFFFDGPA--VGTVNDYNSVVSGTVFVAKNPCLHPGDIRVVKAVDV 768
Query: 2339 RALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSR 2518
LHHMVDC+VFP +G RP P+ECSGSDLDGDIYFVCWD+DL P +Q PMDY PAPT+R
Sbjct: 769 PILHHMVDCLVFPQKGHRPLPDECSGSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTR 828
Query: 2519 LDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFP 2698
LDHDVT++EV++YFT+YIVND+LG+IANAHT FAD+E A S PCLELA+LFS+AVDFP
Sbjct: 829 LDHDVTMQEVQKYFTDYIVNDTLGVIANAHTAFADRERAKARSPPCLELAKLFSVAVDFP 888
Query: 2699 KTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVA 2878
KTGVPA IP +LRVKE+PDFM+K D+ SY+S ++GKL+REV+DI P SI +FT++VA
Sbjct: 889 KTGVPANIPYNLRVKEFPDFMEKSDRVSYQSENVLGKLYREVRDIEP--LSITAFTRDVA 946
Query: 2879 RRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDR 3058
RSYDPD+E+ G+ DYV+EA YK EYD KLGNLM+YYG+KTEAE+L+GGI+KMSKTFDR
Sbjct: 947 ERSYDPDLEIPGYEDYVEEAHSYKDEYDYKLGNLMDYYGVKTEAEMLTGGILKMSKTFDR 1006
Query: 3059 RKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHY 3238
RKD EA++ AVR+LRNE RSWF+ E DD YAKASAWYHVTYHPD+WG YN GL+RDH+
Sbjct: 1007 RKDAEAVADAVRALRNEARSWFRA--EDDDAYAKASAWYHVTYHPDYWGCYNEGLRRDHF 1064
Query: 3239 ISFPWCVYDKLIKIKKDNSRRASDMASLEREF 3334
ISFPWCV+DKLIKIK+D S R+ +AS R F
Sbjct: 1065 ISFPWCVHDKLIKIKRD-SVRSQGLASRFRRF 1095
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 1506 bits (3900), Expect = 0.0
Identities = 744/1074 (69%), Positives = 877/1074 (81%), Gaps = 3/1074 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFPDL+PAE VK FLE++TG GTV AL+VK SK G R +A+VQFV+ A+
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS RLYFGSSYL+AW+ DI+Q +V M+ +TLNFGCQ S +KF+VL
Sbjct: 61 IINLASK--RLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGST 116
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
E VS+KFG G+KK++F L S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 117 E-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 175
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ G+ LPNFQ+SF Y E
Sbjct: 176 YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 235
Query: 722 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
++ L+TG F + ALVP V PP G+ +PY+ILFK+ LVQ GC+PGP L+ FFR
Sbjct: 236 ENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFR 295
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R ++ IE ALEKLYY+KECCYDPV WL EQY+ Y R+ P SP+I+LDDGLVY
Sbjct: 296 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 355
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YST+L PK + G
Sbjct: 356 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 415
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+ RT +YERILST+++G +IG+KKF+FLAFSSSQLRDNS+WMFA GL A+ IR WM
Sbjct: 416 N-GIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 474
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF I+NVAKYAARLGQSF SS ETLSV E+E I D++ +GT YVFSDGIGKISA
Sbjct: 475 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 532
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFARRVA KCG + TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 533 DFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 591
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPC+LNRQ+ITLLSTLGVKD + + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 592 GWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 651
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR K+RIF+P R MMGCLDE+ L
Sbjct: 652 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTL 711
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQF+GAG F E+ + ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 712 EYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 771
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD D+IPPRQV PM+Y PAP+
Sbjct: 772 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 831
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDHDVTIEEVEEYFTNYIVNDSLGII+NAH VFAD+E +MA+S+PC +LA L SIAVDF
Sbjct: 832 QLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDF 891
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 2872
PKTGVPAEIP R KEYPDFMDK PDK +Y S R+IGKL+R+VKD AP +S FT++
Sbjct: 892 PKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 951
Query: 2873 VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 3052
VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 952 VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1011
Query: 3053 DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYN 3214
DRRKD EAIS AVR+LR E R+WFK+ N+ DD KASAWYHVTYHP +WG YN
Sbjct: 1012 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYN 1065
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1504 bits (3893), Expect = 0.0
Identities = 750/1103 (67%), Positives = 886/1103 (80%), Gaps = 7/1103 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRG-PRPYARVQFVNISCAE 178
MGKTI V G P V A +K FLE+YTG+GT+ ALE+K K G +A+VQF ++ AE
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 179 IIMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 358
+I+ LA +L++G +YL+A + +DII PRTF+H M+++TL+FG Q S E+F VLWK
Sbjct: 61 LIISLAK---QLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117
Query: 359 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 538
A +VSVKFG G++K +F L H S EY+L+LS ENIWQI L P GQ K LLIQL AP+
Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177
Query: 539 IYKKLNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYK 715
IY+K + S SYF+ETPDDQW+R DFTPSC IGQSS LCL+LP+G +LPNF ++F YK
Sbjct: 178 IYEK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYK 236
Query: 716 ESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
E+ F LE+G F+ NL LVPIV PP+G LP++ILFK+ LVQ GCL GP LDTNFFR
Sbjct: 237 ENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFR 296
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
VDP+R +I +IEHALEKLYY++ECCY+PV WL+EQY Y + ++ SPAISLD GLVY
Sbjct: 297 WVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYIS-KQVAGSPAISLDTGLVY 355
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RVQITP +VYF GPEVNVSNRVLR+Y + +DNFLRVSF+DE +K++ST +SP+++
Sbjct: 356 VRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS-- 413
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+E +RT +Y RILS L+ GI+IG+KKFDFLA SSSQLRDNS WMFA GL A IR M
Sbjct: 414 NEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRM 473
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF IRNVAKYAARLGQSFSSS ETL V + E+E I DIE R+GT YVFSDGIGKISA
Sbjct: 474 GDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISA 533
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
+ A RVAIKCG K++TPSAFQIRYGGYKGVVAVDP SS KLSLR SM KY+SENT LDVL
Sbjct: 534 ELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVL 593
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
SWSKY+PCFLNRQ+ITLLSTLGVKD+VF+ KQREAV QLD IL DPLRAQEAL+LMSPGE
Sbjct: 594 SWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGE 653
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILKEML CGYKPD EPFLSMMLQTFR++KLL+LR K RIFVP R MMGCLDET L
Sbjct: 654 NTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTL 713
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYG+VFVQ SG G + +S M Y + S N+++EG VVVAKNPCLHPGDVR+L A+D
Sbjct: 714 EYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVD 773
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +GMRPHP+ECSGSDLDGDIYFVCWD DLIPPRQ++PMDY+PAPT
Sbjct: 774 VPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTK 833
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
LDHDV IEEVEEYFTNYI ND LGIIANAHTVFADKE + AL PC ELA+LFSIA++F
Sbjct: 834 VLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEF 893
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEV 2875
PKTGVPAEIP HL VKEYPDFM+K +K +YES +IGKLFREVKD+APH +RSFT++V
Sbjct: 894 PKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDV 953
Query: 2876 ARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFD 3055
A +SYD DMEVDGF DYV +AF YK++YD KLG+LM+ GI+TE+EILSG IMKMSK+FD
Sbjct: 954 AMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFD 1013
Query: 3056 RRKDVEAISAAVRSLRNEVRSWFKKGNE-----SDDPYAKASAWYHVTYHPDFWGSYNVG 3220
+RKD EAI+ AVRSLR E R+WF K +DD YA ASAWYHVTYHP +WG YN G
Sbjct: 1014 KRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEG 1073
Query: 3221 LKRDHYISFPWCVYDKLIKIKKD 3289
+ DH++SFPWCVYDKLI+IK+D
Sbjct: 1074 MYHDHFLSFPWCVYDKLIQIKRD 1096
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 1498 bits (3878), Expect = 0.0
Identities = 753/1132 (66%), Positives = 889/1132 (78%), Gaps = 15/1132 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI VS FP V AE VK FLE YTG+ TV AL+++ K G R YA VQF + AE+
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I++L + RLY+GSSYL+A + DI+ PRTF+H ME VTL+FGCQ S EKF VLW+
Sbjct: 61 IIRLTNQ--RLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEE 118
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
V+V FG GM+K+ F+L H+ VEYRL L YENIWQI L+ P QT+K LLIQLFGAPRI
Sbjct: 119 VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178
Query: 542 YKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNFQ 694
Y+K + + +YF + PDDQW+RTTDFT S CIGQSS LCL+LPY ++LPNF+
Sbjct: 179 YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238
Query: 695 DSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPK 874
++F +YKES+ F LE+G ++ NL LVPIV P G++LPY ILFK+ LVQ GC+PGP
Sbjct: 239 ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298
Query: 875 LDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAIS 1054
LD NF+RLV+P R D YI+HALEKLYY+KECC++P WL EQY+ Y ++ P SP IS
Sbjct: 299 LDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVIS 358
Query: 1055 LDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDL 1234
LDDGLV V RVQITP+RVYF GPE+NVSNRVLRH+ D +DNFLR++FVDEE +K++STDL
Sbjct: 359 LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDL 418
Query: 1235 SPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDA 1414
+ N+ T++Y RILSTLK GI+IG+K+F+FLAFSSSQLR+NS WMFA GL A
Sbjct: 419 LTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTA 472
Query: 1415 DSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSD 1594
IR WMG+F IRNVAKYAARLGQSFSSSTETLSV + E+E I D+E R+G YVFSD
Sbjct: 473 ADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSD 532
Query: 1595 GIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSE 1774
GIGKISA FA++VA KC TPSAFQIR GG+KGVVAVDP SS KLSLR SM KY+SE
Sbjct: 533 GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 592
Query: 1775 NTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEAL 1954
NTKLDVL+WSKYQPCFLNRQ+ITLLSTLGV D+ F+ KQRE V QL+ IL DPL+AQEAL
Sbjct: 593 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 652
Query: 1955 DLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGC 2134
+LMSPGEN+NILKEML CGY+PD EPFLSMMLQTFR+SKLL+LR K+RIFV R MMGC
Sbjct: 653 ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 712
Query: 2135 LDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDV 2314
LDET L+YGQVFVQ SG+ ++ ++V+G VVVAKNPCLHPGDV
Sbjct: 713 LDETRTLDYGQVFVQVSGS----------------RSEQRFIVQGKVVVAKNPCLHPGDV 756
Query: 2315 RVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMD 2494
RVL A++V LHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD +LIP +Q+ PMD
Sbjct: 757 RVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMD 816
Query: 2495 YSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARL 2674
YSPAPT L+H+VTIEEVEEYFTNYIVNDSLGIIANAHTVFAD+E A+S C LA+L
Sbjct: 817 YSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKL 876
Query: 2675 FSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSI 2854
FSIAVDFPKTGVPAEIP LRVKEYPDFM+KPDK +Y+S +IGKLFREVKD+AP+ I
Sbjct: 877 FSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFI 936
Query: 2855 RSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 3034
RS T+E R YDPDMEVDG+ DYVD+AF +K+ YD KLGNLMEYYGIKTEAEILSGGIM
Sbjct: 937 RSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIM 996
Query: 3035 KMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGN----ESDDPYAKASAWYHVTYHPDF 3199
KMS++F +++D EAI AVRSLR E RSWF +KGN E+DD YAKASAWYHVTYHP +
Sbjct: 997 KMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSY 1056
Query: 3200 WGSYNVGLKRDHYISFPWCVYDKLIKIKKD-NSRRASDMASLEREFSRRLNL 3352
WG YN G+ R+H++SFPWCVYDKLI IKK SRR S ++SLE F+R L L
Sbjct: 1057 WGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1480 bits (3831), Expect = 0.0
Identities = 732/1133 (64%), Positives = 898/1133 (79%), Gaps = 16/1133 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GF V A VK FLE YTG+ TV AL+++ K+ R +A VQF S A +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I++LA+ RLY+G SYL+A + DI+ PR F+H ME+VT+NFGCQ S EKF VLWKA
Sbjct: 61 IIRLANQ--RLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKA 118
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
++V++ FGTGM+K+ F+L + S +Y+L+L YENIWQI L PH QT+K LLIQLFGAPRI
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 542 YKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNFQ 694
Y+K +D + +YF++ PDDQW+RTTDFT S CIGQSS L L+LP+ ++LPNF+
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFR 238
Query: 695 DSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPK 874
++F +YKE++ LE+G ++ NL+LVPIV P R ++LP+ ILFKV LVQ GC+PGP
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 875 LDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAIS 1054
LD F+RLVDP R YI+HALEKLYY++ECCY+P WL E+Y+ + R+ SP IS
Sbjct: 299 LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358
Query: 1055 LDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDL 1234
LD+GLVYV RVQITP+RVYF GPE+NVSNRVLR + + +DNFLR+SFVDEE +K++ST++
Sbjct: 359 LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418
Query: 1235 SPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDA 1414
+ +RT +Y+RILSTL+ GI+IGNK+F+FLAFSSSQLR+NS WMFA GL A
Sbjct: 419 QAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472
Query: 1415 DSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSD 1594
IR WMG+F IRNVAKYAARLGQSFSSSTETLSV + E+ I DIE +++G KYVFSD
Sbjct: 473 ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSD 532
Query: 1595 GIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSE 1774
GIGKISA+FA++VA KC K TPSAFQIR GG+KGVVA+DP SS KLSLR SM KY+SE
Sbjct: 533 GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592
Query: 1775 NTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEAL 1954
NTKLDVL+WSKYQPCFLNRQ+ITLLSTLGV D F+ KQRE V QL+ +L DPL AQEAL
Sbjct: 593 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEAL 652
Query: 1955 DLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGC 2134
+LMSPGEN+NILKEML CGYKPD EPFLSMML+TFR+SKLL+LR KARIFV + R MMGC
Sbjct: 653 ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712
Query: 2135 LDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDV 2314
LDET L YGQVFVQFSG+ ++ ++V+G V+VAKNPCLHPGDV
Sbjct: 713 LDETRTLNYGQVFVQFSGS----------------RSERRFIVQGKVIVAKNPCLHPGDV 756
Query: 2315 RVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMD 2494
RVL+A++V LHHMVDCVVFP +G RPHPNECSGSDLDGD+YFVCWD +LIP +Q+ PMD
Sbjct: 757 RVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMD 816
Query: 2495 YSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARL 2674
YSPA T++LDH+VTIEE+EEYFTNYIVNDSLGII+NAHT FAD+E + A+S PCLELA+L
Sbjct: 817 YSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKL 876
Query: 2675 FSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSI 2854
FSIAVDFPKTGVPAEIP LRVKEYPDFM+KPDK SY+S +IGKLFREVK++AP+ SI
Sbjct: 877 FSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSI 936
Query: 2855 RSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 3034
+ T+E +R YDPDMEV+GF DY+D+AF +K++YD KLGNLM+YYG+KTEAEIL GGIM
Sbjct: 937 KFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIM 996
Query: 3035 KMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGN----ESDDPYAKASAWYHVTYHPDF 3199
KMS++F +++D EAIS AVRSLR E RSWF +KG+ E DD YAKASAWY+VTYHP +
Sbjct: 997 KMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSY 1056
Query: 3200 WGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS--RRASDMASLEREFSRRLNL 3352
WG YN G+ RDH++SFPWCVYDKLI+IKK+ + R A D++SLE F R L+L
Sbjct: 1057 WGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1476 bits (3820), Expect = 0.0
Identities = 729/1133 (64%), Positives = 895/1133 (78%), Gaps = 16/1133 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GF V A VK FLE YTG+ TV AL+++ K+ R +A VQF S A +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I++LA+ RLY+G SYL+A + DI+ PR F+H ME+VT+NF C S EKF VLWKA
Sbjct: 61 IIRLANQ--RLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKA 118
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
++V++ FGTGM+K+ F+L + S +Y+L+L YENIWQI L PH QT+K LLIQLFGAPRI
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 542 YKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNFQ 694
Y+K +D + +YF++ PDDQW+RTTDFT S CIGQSS LCL+LP+ ++LPNF+
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFR 238
Query: 695 DSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPK 874
++F +YKE++ LE+G ++ NL+LVPIV P R ++LP+ ILFKV LVQ GC+PGP
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 875 LDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAIS 1054
LD F+RLVDP R YI+HALEKLYY++ECCY+P WL E+Y+ + R+ SP IS
Sbjct: 299 LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358
Query: 1055 LDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDL 1234
LD+GLVYV RVQITP+RVYF GPE+NVSNRVLR + + +DNFLR+SFVDEE +K++ST++
Sbjct: 359 LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418
Query: 1235 SPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDA 1414
+ +RT +Y+RILSTL+ GI+IGNK+F+FLAFSSSQLR+NS WMFA GL A
Sbjct: 419 QAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472
Query: 1415 DSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSD 1594
IR WMG+F IRNVAKYAARLGQSFSSSTETLSV + E+ I DIE +++G KYVF D
Sbjct: 473 ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPD 532
Query: 1595 GIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSE 1774
GIGKISA+FA++VA KC K TPSAFQIR GG+KGVVA+DP SS KLSLR SM KY+SE
Sbjct: 533 GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592
Query: 1775 NTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEAL 1954
NTKLDVL+WSKYQPCFLNRQ+ITLLSTLGV DY F+ KQRE V QL+ +L DPL AQEAL
Sbjct: 593 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEAL 652
Query: 1955 DLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGC 2134
+LMSPGEN+NILKEML CGYKPD EPFLSMML+TFR+SKLL+LR KARIFV + R MMGC
Sbjct: 653 ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712
Query: 2135 LDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDV 2314
LDET L YGQVFVQFSG+ ++ ++V+G V+VAKNPCLHPGDV
Sbjct: 713 LDETRTLNYGQVFVQFSGS----------------RSERRFIVQGKVIVAKNPCLHPGDV 756
Query: 2315 RVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMD 2494
RVL+A++V LHHMVDCVVFP +G RPHPNECSGSDLDGD+YFVCWD +LIP +Q+ PMD
Sbjct: 757 RVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMD 816
Query: 2495 YSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARL 2674
YSPA T++LDH+VTIEE+EEYFTNYIVNDSLGII+NAHT FAD+E A+S PCLELA+L
Sbjct: 817 YSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKL 876
Query: 2675 FSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSI 2854
FSIAVDFPKTGVPAEIP LRVKE+PDFM+KPDK SY+S +IGKLFREVK++AP+ SI
Sbjct: 877 FSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSI 936
Query: 2855 RSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 3034
+ T+E +R YDPDMEV+GF DY+D+AF YK++YD KLGNLM+YYG+KTEAEILSGGIM
Sbjct: 937 KLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIM 996
Query: 3035 KMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGN----ESDDPYAKASAWYHVTYHPDF 3199
KMS++F +++D E+IS AVRSLR E RSWF +KG+ E DD YAKASAWY+VTYH +
Sbjct: 997 KMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSY 1056
Query: 3200 WGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS--RRASDMASLEREFSRRLNL 3352
WG YN G+ RDH++SFPWCVYDKLI+IKK+ + R A D++SLE F R +L
Sbjct: 1057 WGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 1475 bits (3818), Expect = 0.0
Identities = 735/1135 (64%), Positives = 894/1135 (78%), Gaps = 18/1135 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRG-PRPYARVQFVNISCAE 178
MGKTI +SGFP V AE VK FLE +TG+GTV A++++P+K G R YA VQF+ + AE
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60
Query: 179 IIMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 358
+I++LA+ RL++G SYL A DI+ PR ++ ++ VTL+FGCQ S+EKFS LW+
Sbjct: 61 LIIRLANP--RLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118
Query: 359 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 538
+VSV FG G+++++F L + VEYRLQL YEN+WQI L+ P GQTAK LLIQL GAPR
Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178
Query: 539 IYKK--------LNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNF 691
+Y+K L + + +YF++TPDDQW+R TDFT SC IG SS L L+LPYG+ LP+
Sbjct: 179 VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238
Query: 692 QDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGP 871
+++FV+YKES++ F LE+G F+ NL LVPIV PP G+ LP+ +FK+ L+Q GCL GP
Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298
Query: 872 KLDTNFFRLVDPKRF-DIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPA 1048
LD +F+RLVDP+R ++ I +ALEKL+ +KEC Y+P AWLNEQY KY T P PA
Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 1049 ISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYST 1228
I+LD GLVYV RVQ+TP++VYF GPE+NVSNRVLR Y D++D FLRVSFVDEE +K++ST
Sbjct: 359 IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 418
Query: 1229 DLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGL 1408
DLSP+ + +E++RT +Y RILS L+ GI IG++KF+FLAFSSSQLRDNSLWMFA +G
Sbjct: 419 DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 478
Query: 1409 DADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVF 1588
AD+IR+W+GDFR IRNVAKYAARLGQSF SSTETL+V E E E I DIE R KYVF
Sbjct: 479 SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 538
Query: 1589 SDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQ 1768
SDGIGKIS+ FA+RVA KCG K PSAFQIRY GYKGVVAVDP SS KLSLR SM KY+
Sbjct: 539 SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 598
Query: 1769 SENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQE 1948
SE KLDVL++SK Q C+LNRQ+ITLLSTLGV D VF+ KQREAV QL+ IL DPLRA+E
Sbjct: 599 SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 658
Query: 1949 ALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMM 2128
ALDLMS GE +NILKE+L CGY+P+ EPFLSMMLQ FR+SKL +LR K RI +P R MM
Sbjct: 659 ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 718
Query: 2129 GCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPG 2308
GCLDE LEYG+VFVQFSG F+E+S M + NY+V G VVVAKNPCLHPG
Sbjct: 719 GCLDEMRTLEYGEVFVQFSGITHRPFFEDSFM-LGGTGSGQNYIVVGRVVVAKNPCLHPG 777
Query: 2309 DVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSP 2488
DVRVL+A++V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD +LIP +Q P
Sbjct: 778 DVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEP 837
Query: 2489 MDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELA 2668
MDYSPAPT+RLDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE + A+S C+ELA
Sbjct: 838 MDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELA 897
Query: 2669 RLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTT 2848
RLFSIAVDFPKTGVPA IP L VKEYPDFM+K +K +YES +IGKLFREVKDIAP+
Sbjct: 898 RLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVG 957
Query: 2849 SIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGG 3028
S+ FTKEVA RSYDPDME DGF DY+D+AF YK+ YD KLGNL++YYGIK+EAEI+ G
Sbjct: 958 SLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGS 1017
Query: 3029 IMKMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGNE----SDDPYAKASAWYHVTYHP 3193
IM+MSK+F +R+D E+I+ AVR+LR E R+WF +KG+ +DD YAKASAWY+VTYH
Sbjct: 1018 IMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHH 1077
Query: 3194 DFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS--RRASDMASLEREFSRRLNL 3352
+WG YN G+ RDHY+SFPWCVYDKL++IK+ + RR+ M+SLER F RRL+L
Sbjct: 1078 SYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132
>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 1459 bits (3778), Expect = 0.0
Identities = 736/1123 (65%), Positives = 871/1123 (77%), Gaps = 5/1123 (0%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI V GFP L+ AE VK FLE++TG GTV ALEVK SK G R +A+VQFV+ A+
Sbjct: 71 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 130
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LAS RLYFGSSYL+AW+ DI+Q +V M+ +TLNFGCQ S +KF+VL
Sbjct: 131 IINLASK--RLYFGSSYLKAWELETDIVQL-WAYVDHMDGITLNFGCQISDDKFAVLGST 187
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
E +VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 188 E-----------------------------------VVLHRPYGQNAQFLLIQLFGAPRI 212
Query: 542 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 721
YK+L +S +S+F+ETPDDQW+RTTDFTPS IG SS LCLQ G+ LPNFQ+SF Y E
Sbjct: 213 YKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 272
Query: 722 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 895
++ L+TG F + ALVP V PP G+ +PY+ILFK+ LVQ GC+PGP L+ FFR
Sbjct: 273 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 332
Query: 896 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 1075
LVDP+R ++ IE ALEKLYY+KECCYDPV WL EQY+ Y R+ P SP+I+LDDGLVY
Sbjct: 333 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVY 392
Query: 1076 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 1255
V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YST+L PK + G
Sbjct: 393 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 452
Query: 1256 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 1435
+ RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA GL A+ IR WM
Sbjct: 453 N-GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWM 511
Query: 1436 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1615
GDF I+NVAKYAAR GQSF SS ETLSV E+E I D++ +GT YVFSDGIGKISA
Sbjct: 512 GDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 569
Query: 1616 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1795
DFAR+VA CG + TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 570 DFARKVASNCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 628
Query: 1796 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1975
WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 629 EWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 688
Query: 1976 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 2155
N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR K+RIF+P R MMGCLDE+ L
Sbjct: 689 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTL 748
Query: 2156 EYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 2335
EYGQVFVQF+GAG F E+ + ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 749 EYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 808
Query: 2336 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTS 2515
V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD D+IPPRQV M++ P P+
Sbjct: 809 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSI 868
Query: 2516 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 2695
+LDHDVTIEEVEEYFTNYIVND LGIIANAH VFAD+E +MA+ +DF
Sbjct: 869 QLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMAM--------------MDF 914
Query: 2696 PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 2872
PKTGVPAEIP LR KEYPDFMDK PDK +Y S R+IGKLFR+VKD AP +SI FT++
Sbjct: 915 PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRD 974
Query: 2873 VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 3052
ARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 975 DARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1034
Query: 3053 DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 3232
DRRKD EAIS AVR+LR E R+WFK+ N+ DD KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1035 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1094
Query: 3233 HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 3355
H+ISFPWCVYD+LI+IKK+ +R +++SL + SR+L L+
Sbjct: 1095 HFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRDQLSRKLVLK 1137
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 1430 bits (3702), Expect = 0.0
Identities = 718/1121 (64%), Positives = 875/1121 (78%), Gaps = 13/1121 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 181
MGKTI + GFP AE +K FLE++TG+G+V AL+++P+K G R YA +QF +IS AE
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGGRFYAIIQFQSISQAEK 60
Query: 182 IMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 361
I+ LA+A RL++G SYL A + DI+ PRTF+H + + L+ GCQ +++KFSVLW
Sbjct: 61 IISLANA--RLWYGRSYLNARPAH-DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT 117
Query: 362 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 541
VSV FG GM+ + F L + YRLQLSYENIWQI L++ G++AK L+IQL+G PRI
Sbjct: 118 AEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRI 177
Query: 542 YKKLNDSVH-------SYFRETPDDQWIRTTDFTP-SCIGQSSGLCLQLPYGMRLPNFQD 697
Y++ S +YFR+ PDD W+RTTDFTP SCIGQSS LCL L LP+F++
Sbjct: 178 YQQEVCSSGGNGYEDMNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEE 235
Query: 698 SFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKL 877
+F +YK++ F LE G F+ N LVPIV P G++LPY ILFK+ LVQ GCL GP L
Sbjct: 236 NFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTL 295
Query: 878 DTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISL 1057
D NF+RLVDP+R IE AL+KL +KE CY+P WLNE+Y KY ++ P ISL
Sbjct: 296 DNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISL 355
Query: 1058 DDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLS 1237
D GLVYV RVQITP++VYFSGPEVNVSNR+LR Y +DNFLRVSFVDEE +K+YSTDLS
Sbjct: 356 DSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLS 415
Query: 1238 PKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDAD 1417
P+ + ++T++Y R+LS L++GI++G KKF+FLAFSSSQLR+NSLWMFAPT+ AD
Sbjct: 416 PRTST----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSAD 471
Query: 1418 SIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDG 1597
+IR MGDFR IRNVAKYAARLGQSF SSTETLSVG E+E I D+ G KYVFSDG
Sbjct: 472 TIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDG 531
Query: 1598 IGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSEN 1777
IGKISADFA RVA KCG+K+ TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+SEN
Sbjct: 532 IGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESEN 591
Query: 1778 TKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALD 1957
TKLDVL+ SKYQPCFLNRQ+ITLLSTL V+D+VF KQR AV QL+ IL DPL+A+EALD
Sbjct: 592 TKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALD 651
Query: 1958 LMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCL 2137
LMS GE++N+LKE+L CGYKP+ EPFLSMMLQTFR+SKLL+LR K RIF+P R MMGCL
Sbjct: 652 LMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCL 711
Query: 2138 DETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVR 2317
DET LEYGQVFVQFSG R +++ ++ S D +++EG VVVAKNPCLHPGDVR
Sbjct: 712 DETRTLEYGQVFVQFSGKRRRQLFDDICIHS---SLDSCFIIEGKVVVAKNPCLHPGDVR 768
Query: 2318 VLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDY 2497
VL+A++V LHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD +LIPP+Q+ PMDY
Sbjct: 769 VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828
Query: 2498 SPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLF 2677
+PAP +D DVTIEEVEEYF NYIVNDSLGIIANAHTVFAD + + A+S PCL+LA+LF
Sbjct: 829 TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLF 888
Query: 2678 SIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIR 2857
SIAVDFPKTGVPAEIPP L KEYPDFM+KPDK +Y S +IG+LFREVKDIAPH +SI
Sbjct: 889 SIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIA 948
Query: 2858 SFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMK 3037
SFT++VA + YDPDMEVDGF DY+++AF +K YD KLGN+++YYGIKTEAEILSG IM
Sbjct: 949 SFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMT 1008
Query: 3038 MSKTFDRRKDVEAISAAVRSLRNEVRSWFKK-----GNESDDPYAKASAWYHVTYHPDFW 3202
+SK+F +R+D +AI+ AV+SLR E R+WF + + DD YAKASAWYHVTYHP+++
Sbjct: 1009 LSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYF 1068
Query: 3203 GSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRASDMASLE 3325
G YN G+ R H+ISFPWCV+DKL IKK+ +A ++SLE
Sbjct: 1069 GLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLISSLE 1109
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 1430 bits (3701), Expect = 0.0
Identities = 730/1136 (64%), Positives = 886/1136 (77%), Gaps = 19/1136 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSKRGP-RPYARVQFVNISCAE 178
MGKTIH+SGFP V A+ VK FLE +TG GTV A++V+P KRG R YA VQF + + AE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 179 IIMKLASASARLYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 358
+I+ LA+ RL++GSSYL+A + +DI+ PRT+++ +E++ L FGCQ S EKF VLW+
Sbjct: 61 LIISLANQ--RLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 359 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 538
V FG GM+KM+F L + SVEYRL+LSYE IWQI L+ P Q+ K LLIQL GAPR
Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178
Query: 539 IYKKL--------NDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNF 691
IYKK+ ++ + ++F+E DDQW+RTTDFT SC IGQSS LCL+LP G +LP F
Sbjct: 179 IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPF 238
Query: 692 QDSFVFYKESQDPFRL-ETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPG 868
+ +F +Y+E + FRL + F+ L PIV R LPY+ILFK+ LVQ GC+P
Sbjct: 239 KQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS-RSHVLPYKILFKINALVQYGCIPW 297
Query: 869 PKLDTNFFRLVDPK-RFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSP 1045
P LD +F+RLV+ I ++EHALEKL+++KEC YDP +L EQY KY R PNSP
Sbjct: 298 PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYS--RHPPNSP 355
Query: 1046 AISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYS 1225
ISLDDGLVYV RVQITP +V+F GPEVNVSNRVLRH+ ++DNFLRVSFVDEEWDKM S
Sbjct: 356 VISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS 415
Query: 1226 TDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNG 1405
TDL P++++ E+ +T +Y RILS LK GI+IG+K F FLAFSSSQLRDNSLWMFA
Sbjct: 416 TDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPD 475
Query: 1406 LDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYV 1585
+DA IR WMGDFR I+N AKYAARLGQSF SSTE LSV E E I DIE + KYV
Sbjct: 476 IDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYV 535
Query: 1586 FSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKY 1765
FSDGIGKIS+ FA+ VA KCGF+ A PSAFQIRYGGYKGVVAVDP S++KLSLR SM K+
Sbjct: 536 FSDGIGKISSKFAKEVAAKCGFQ-AVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKF 594
Query: 1766 QSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQ 1945
+S+NTKLDVL SKYQPCFLNRQ+ITL+STLGV+D +F+ KQ EAV QLD IL DPL+AQ
Sbjct: 595 ESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQ 654
Query: 1946 EALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQM 2125
EAL+LMSPGEN+NILKEMLKCGY+PD EP+LSMMLQTFR+SKLL+LR K+RIF+P R M
Sbjct: 655 EALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAM 714
Query: 2126 MGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHP 2305
MGCLDET LEYGQVFVQ S +GR ES ++ + + + V+EGNV VAKNPCLHP
Sbjct: 715 MGCLDETRTLEYGQVFVQIS-SGRHRNLSES-FAFNRIGREHHLVIEGNVTVAKNPCLHP 772
Query: 2306 GDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVS 2485
GDVRVLKA+++ L+HMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD++LIP RQ+
Sbjct: 773 GDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIP 832
Query: 2486 PMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLEL 2665
PMDY+PAP + LD DVT E+++EYF NY+VNDSLGIIANAHT FADKE A S PCLEL
Sbjct: 833 PMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLEL 892
Query: 2666 ARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHT 2845
A+LFS+AVDFPKTGVPA IP HL VKE+PDFM+KPD+ SYES ++IGKLFR VKDIAP
Sbjct: 893 AKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTL 952
Query: 2846 TSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSG 3025
+ IRSFT++VARR YD DMEV+GF DYV++AF +K+ YD KLGNL++YYGIK+EAE+LSG
Sbjct: 953 SHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSG 1012
Query: 3026 GIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFK----KGNESDDPYAKASAWYHVTYHP 3193
IM+MSK+F RR+D EAI+ AVRSLR E R+WF + SDD +AKASAWY+VTYH
Sbjct: 1013 SIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHH 1072
Query: 3194 DFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSR---RASDMASLEREFSRRLNL 3352
+WG YN G+KRDHY+SFPWCVYDKL++IK++N R RA+ +AS +R F LNL
Sbjct: 1073 SYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDR-FGHVLNL 1127
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 1423 bits (3683), Expect = 0.0
Identities = 717/1133 (63%), Positives = 876/1133 (77%), Gaps = 21/1133 (1%)
Frame = +2
Query: 2 MGKTIHVSGFPDLVPAERVKRFLEQYTGQGTVIALEVKPSK-RGPRPYARVQFVNISCAE 178
MGKTI + GFP V VK F+EQYTG+GTV A++++ K R PR +A +QF + A
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60
Query: 179 IIMKLASASAR-LYFGSSYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLW 355
+M A+ R L +G+SYL+A + DI+ PR F+H ++ V L+FGCQ S+ +FSVLW
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120
Query: 356 KAESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAP 535
K + V V FG+GM+KMHF+ HN+V+Y+L+LSYENIW+I L+ P +T + LLIQL GAP
Sbjct: 121 KKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAP 180
Query: 536 RIYKK--------LNDSVHSYFRETPDDQWIRTTDFTP-SCIGQSSGLCLQLPYGMRLPN 688
R+++ +D + ++F++ PD+QWIR DFTP S IGQSS +CL+LP G +LPN
Sbjct: 181 RVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPN 240
Query: 689 FQDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPG 868
F+++F +Y+ES+ + L+TGVPF+ N LVPIV PP G+++ Y ILFKV LVQ CL G
Sbjct: 241 FRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAG 300
Query: 869 PKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPA 1048
P LD +F+RLVDP+R +IE+ALEK+YY KE CY+P WL +QY+ Y + P SPA
Sbjct: 301 PALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPA 360
Query: 1049 ISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYST 1228
ISLD GLVYV RVQITP +VYF GPE+NVSNRVLRH+R+H+DNFLRVSFVDEE DK++ST
Sbjct: 361 ISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFST 420
Query: 1229 DLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTN-G 1405
DLS + +NK+T++Y RILS LK GI++G+KKF+FLAFSSSQLR+NSLWMFAPT G
Sbjct: 421 DLSSR----SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETG 476
Query: 1406 LDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVR-NGTKY 1582
A IR+WMG+F IRNVAKYAARLGQSF SSTETLSV EVE I D++ + +G +Y
Sbjct: 477 CTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEY 536
Query: 1583 VFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLK 1762
VFSDGIGKIS +FA++VA KCG+ TPSAFQIRYGGYKGVVAVDP S KLSLR SM K
Sbjct: 537 VFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRK 595
Query: 1763 YQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRA 1942
Y S+NTKLDVL+ SK+QPC+LNRQ+I+LLSTLG+KD VF+ KQRE V QL+ IL D L+A
Sbjct: 596 YDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKA 655
Query: 1943 QEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQ 2122
QE LDLMS GE +N+LKEML CGYKP+ EPFLSMMLQTFR+SKLL+LR+K+RIF+P+ R
Sbjct: 656 QEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRA 715
Query: 2123 MMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDC--NYVVEGNVVVAKNPC 2296
MMGCLDET LEYGQVFVQFS N++ D S D NY+V+G VVVAKNPC
Sbjct: 716 MMGCLDETRTLEYGQVFVQFSNN------RLQNLSDDFFSYDLPKNYMVKGKVVVAKNPC 769
Query: 2297 LHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWDSDLIPPR 2476
LHPGDVRVL+A+DV L+HMVDCVVFP +G RPHPNECSGSDLDGDIYFVCWD +LIP R
Sbjct: 770 LHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSR 829
Query: 2477 QVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPC 2656
+ PMDY+ T LDHDV IEEVEEYF NYIVNDSLGIIANAHTVFADKE A+S+ C
Sbjct: 830 PIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQC 889
Query: 2657 LELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIA 2836
++LARLFS AVDFPKTGVPA IPP L VKEYPDFM+KPDK +Y+S +IGKLFREVK+I+
Sbjct: 890 VKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEIS 949
Query: 2837 PHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEI 3016
SI SFTK VAR SYD +MEVDGF DYVD+AF +KT YD KLGNLM+YYGIKTEAEI
Sbjct: 950 TSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEI 1009
Query: 3017 LSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNESD------DPYAKASAWYH 3178
L G IMKMSK+F++R+D EAI+ AVRSLR E R+WF + + D D YAKASAWYH
Sbjct: 1010 LGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYH 1069
Query: 3179 VTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRASDMASLEREFS 3337
VTYHP +WG YN G+ RDHY+SF WCVY L++IKK+ + + +SLE FS
Sbjct: 1070 VTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKE--KLSIRRSSLEYSFS 1120