BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00008006
         (372 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein A...    86   4e-15
ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein A...    82   6e-14
ref|XP_002533890.1| conserved hypothetical protein [Ricinus comm...    76   4e-12
ref|XP_002531653.1| conserved hypothetical protein [Ricinus comm...    75   7e-12
gb|EXB74531.1| hypothetical protein L484_026228 [Morus notabilis]      74   2e-11
ref|XP_004308308.1| PREDICTED: uncharacterized protein LOC101295...    74   3e-11
ref|XP_004304923.1| PREDICTED: putative ribonuclease H protein A...    74   3e-11
ref|XP_004308354.1| PREDICTED: putative ribonuclease H protein A...    72   8e-11
ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein A...    70   3e-10
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    70   4e-10
ref|YP_008992319.1| hypothetical protein Salmi_Mp055 (mitochondr...    64   3e-08
ref|XP_004289281.1| PREDICTED: putative ribonuclease H protein A...    63   4e-08
ref|XP_006849381.1| hypothetical protein AMTR_s00158p00089990 [A...    63   5e-08
ref|XP_004253442.1| PREDICTED: putative ribonuclease H protein A...    61   1e-07
ref|YP_008992387.1| hypothetical protein Salmi_Mp120 (mitochondr...    61   2e-07
ref|XP_004301067.1| PREDICTED: uncharacterized protein LOC101309...    61   2e-07
ref|XP_002516681.1| conserved hypothetical protein [Ricinus comm...    60   4e-07
ref|XP_004308214.1| PREDICTED: putative ribonuclease H protein A...    59   5e-07
ref|XP_004304990.1| PREDICTED: putative ribonuclease H protein A...    59   5e-07
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    59   5e-07

>ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 197

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 46/116 (39%), Positives = 61/116 (52%)
 Frame = +3

Query: 6   MQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXX 185
           M+N   +L IL R+ + G P +APKIV+V W  P    +K+NTDG+A G+PG        
Sbjct: 1   MKNTVGELCILHRIGIKGRPSKAPKIVEVMWHVPSIYQVKLNTDGAARGSPGLAGFGGIF 60

Query: 186 XXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELL 353
                          G   A EAEL   + AIQ AS +GW+ LW+ESDS  V+  L
Sbjct: 61  RDHLGHVLGCFSGNLGIANALEAELQTVIHAIQMASQRGWHSLWIESDSTLVIHFL 116


>ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 197

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 45/116 (38%), Positives = 59/116 (50%)
 Frame = +3

Query: 6   MQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXX 185
           M+N   +L IL R+ + G P + PKIV+V W       +K+NTDG+A G+PG        
Sbjct: 1   MKNTVGELCILHRIGIKGRPSKVPKIVEVMWHVLSIYQVKLNTDGAARGSPGLAGFGGIF 60

Query: 186 XXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELL 353
                          G   A EAEL A + AIQ AS +GW  LW+ESDS  V+  L
Sbjct: 61  RDHLGQVLCCFSGNLGIATALEAELQAVIHAIQMASQRGWRSLWIESDSTLVIHFL 116


>ref|XP_002533890.1| conserved hypothetical protein [Ricinus communis]
           gi|223526154|gb|EEF28490.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 155

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 43/121 (35%), Positives = 56/121 (46%)
 Frame = +3

Query: 6   MQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXX 185
           M N Q DL ILRRLRV   P +   ++ V W KP   WIK+N  G+A  AP    A    
Sbjct: 1   MHNSQSDLAILRRLRVDLAPCKVTSVISVIWFKPSLEWIKINIGGAARQAPRLSGAGGVF 60

Query: 186 XXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKS 365
                          G  FAFEA+L   +  +    S     +W+E DS+YVV LL  + 
Sbjct: 61  QNHESKAIASSINSLGISFAFEAKLVVVIFVVSKVLSFDLTPIWIECDSLYVVRLLHSRC 120

Query: 366 I 368
           +
Sbjct: 121 L 121


>ref|XP_002531653.1| conserved hypothetical protein [Ricinus communis]
           gi|223528711|gb|EEF30723.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 160

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 45/117 (38%), Positives = 56/117 (47%)
 Frame = +3

Query: 6   MQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXX 185
           M N+     IL+ L + G P  AP I+ V W+     WIKVNTD SA G+P + +     
Sbjct: 36  MFNNTSKFQILKSLHIAGKPSGAPSIISVFWRSSPLVWIKVNTDRSAFGSPRSASLGGIF 95

Query: 186 XXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLR 356
                             FA  AEL AAM  +  A   GW QLWLE DS+YVV L +
Sbjct: 96  EISRGYPAGCFVFSICNSFAHIAELCAAMFVVLKAKEFGWRQLWLECDSMYVVHLFK 152


>gb|EXB74531.1| hypothetical protein L484_026228 [Morus notabilis]
          Length = 203

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 45/117 (38%), Positives = 57/117 (48%)
 Frame = +3

Query: 12  NDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXX 191
           N   ++ IL +L V     ++PKI  V W  P  GW+KVN D SA GA   +        
Sbjct: 35  NSAFEIRILNKLYVRQNFPRSPKIFLVYWIPPPSGWVKVNIDSSAKGALDPIACGGIFRN 94

Query: 192 XXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKK 362
                        G GFAFEAEL A + AI      GW++LWLESDS  ++ LL  K
Sbjct: 95  ARGFVCDCFSVFLGNGFAFEAELWAVINAISITFENGWHKLWLESDSSLIICLLSFK 151


>ref|XP_004308308.1| PREDICTED: uncharacterized protein LOC101295087 [Fragaria vesca
           subsp. vesca]
          Length = 227

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 40/118 (33%), Positives = 57/118 (48%)
 Frame = +3

Query: 3   CMQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXX 182
           CM N    L IL+++ VP  P +AP IV+V W  PL GW+KVNTDG+   + G       
Sbjct: 79  CMNNGVFYLSILKKVGVPCKPSKAPCIVEVNWHPPLFGWVKVNTDGAWRSSSGQAGYGGI 138

Query: 183 XXXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLR 356
                               +  AE+ A ++AI+ +  + W  +WLE DS  V+  LR
Sbjct: 139 FRDFRGGVLGVFCSNFNMASSVAAEVMAVIKAIELSWVRDWKHVWLEVDSSLVITFLR 196


>ref|XP_004304923.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 209

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 41/99 (41%), Positives = 49/99 (49%)
 Frame = +3

Query: 69  QAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXXXXXXXXXERCGFGFAF 248
           +AP+I  V WQ P   WIKVNTDG A G P                     +  G+  +F
Sbjct: 35  KAPRIQHVLWQPPFFPWIKVNTDGLAKGNPSPAACGGVFRDASGGFLGSFCQSLGWKTSF 94

Query: 249 EAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKS 365
            +EL A + AI+ A  KGW  LWLESDSV VV     KS
Sbjct: 95  YSELYAVILAIEIAHDKGWVYLWLESDSVSVVACFSSKS 133


>ref|XP_004308354.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 235

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 43/114 (37%), Positives = 53/114 (46%)
 Frame = +3

Query: 24  DLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXXX 203
           D  +L  L V     +AP+I  V WQ P   WIKVNT+G A G PG              
Sbjct: 46  DARLLASLGVASKGGKAPRIQHVLWQPPFFPWIKVNTNGLAKGNPGPAACGGVFRDASGG 105

Query: 204 XXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKS 365
                    G+  +F +EL   + AI+ A  KGW  LWLESDSV VV     +S
Sbjct: 106 FLGSFCHSLGWKTSFYSELYVVILAIEIAHDKGWVYLWLESDSVSVVACFSSRS 159


>ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 364

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 37/118 (31%), Positives = 57/118 (48%)
 Frame = +3

Query: 3   CMQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXX 182
           CM N   +L +L++  +   P +AP+I +V W  PL GWIKVNTDG+     G       
Sbjct: 182 CMSNSLTELRVLKKFGLLCRPHRAPRITEVNWHPPLFGWIKVNTDGAWQKTTGKSGYGGI 241

Query: 183 XXXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLR 356
                               + +AE+ A ++AI+ A  + W  +WLE DS+ V+  L+
Sbjct: 242 FRDFHGSFLGAFASNLEILNSVDAEVMAVIQAIELAWVRDWEHIWLEVDSIIVLNFLQ 299


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 34/89 (38%), Positives = 45/89 (50%)
 Frame = +3

Query: 75  PKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXXXXXXXXXERCGFGFAFEA 254
           PKI  + W  P P WIK+N++G+  GAPG                          +AF A
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 255 ELTAAMRAIQYASSKGWNQLWLESDSVYV 341
           E+ AA+  I  A + GWN++WLESDS YV
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLESDSTYV 90


>ref|YP_008992319.1| hypothetical protein Salmi_Mp055 (mitochondrion) [Salvia
           miltiorrhiza] gi|534292292|gb|AGU16584.1| hypothetical
           protein Salmi_Mp055 (mitochondrion) [Salvia
           miltiorrhiza]
          Length = 119

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = +3

Query: 237 GFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKSI 368
           GFAFEAEL   M A+  A SKGW+ LW+ESDS+YVV LLR +S+
Sbjct: 2   GFAFEAELVGVMMAVDIAFSKGWHSLWIESDSIYVVSLLRSRSM 45


>ref|XP_004289281.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 215

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 38/102 (37%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +3

Query: 63  PRQAPKIVQ-VTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXXXXXXXXXERCGFG 239
           P +A K ++ V W  PL  WIK+NTDG A G PG  T                    G  
Sbjct: 38  PSRAQKRIRLVLWHPPLSPWIKLNTDGLAKGNPGPATCGGVFRDYQGHFIGGFSTPIGHH 97

Query: 240 FAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKS 365
             F +EL A +  I+ A   GW  +WLE DS  VVE   K S
Sbjct: 98  NDFFSELLAVIIGIELAFQLGWQHVWLECDSTSVVECFSKSS 139


>ref|XP_006849381.1| hypothetical protein AMTR_s00158p00089990 [Amborella trichopoda]
           gi|548852928|gb|ERN10962.1| hypothetical protein
           AMTR_s00158p00089990 [Amborella trichopoda]
          Length = 143

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
 Frame = +3

Query: 24  DLFILRRLRVPGCPRQAPKI-VQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXX 200
           DL ILR   +P   R  PK  V++ W+KP+ GW K+N DG A G   +  A         
Sbjct: 17  DLQILRTFDIPA-ERSRPKTPVEIIWRKPIEGWFKLNVDG-ALGNLDHSGAGGVFKNSMS 74

Query: 201 XXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKSI 368
                   R G    F AE  A  + I+ A  KG  ++W+E DS+ V+E ++ + I
Sbjct: 75  ILGWTVSSRLGNTTNFFAEFAALFQGIEIAKEKGVERVWIECDSIAVIEAIKGRKI 130


>ref|XP_004253442.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           lycopersicum]
          Length = 775

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 33/97 (34%), Positives = 48/97 (49%)
 Frame = +3

Query: 78  KIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXXXXXXXXXERCGFGFAFEAE 257
           K+ QV W +P   WIK+NTDGSA   PGN+ A                   G G   +AE
Sbjct: 592 KVCQVVWNRPPEEWIKINTDGSALTNPGNIGAGGIIRNKEGKLVMAFATSLGEGSNNKAE 651

Query: 258 LTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKKSI 368
             AA+  + +A   G+  + +E DS  +V+ + KKS+
Sbjct: 652 TEAALIGLVHALELGYRNIIMELDSQLIVQWISKKSV 688


>ref|YP_008992387.1| hypothetical protein Salmi_Mp120 (mitochondrion) [Salvia
           miltiorrhiza] gi|534292356|gb|AGU16648.1| hypothetical
           protein Salmi_Mp120 (mitochondrion) [Salvia
           miltiorrhiza]
          Length = 224

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/52 (57%), Positives = 33/52 (63%)
 Frame = +3

Query: 6   MQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPG 161
           M N   DL IL  L V G PR+AP I  VTW  P  G IK+N+DGSA GAPG
Sbjct: 142 MNNSVSDLLILHNLHVRGIPRKAPVITSVTWLPPPEGVIKMNSDGSAMGAPG 193


>ref|XP_004301067.1| PREDICTED: uncharacterized protein LOC101309260 [Fragaria vesca
           subsp. vesca]
          Length = 209

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
 Frame = +3

Query: 3   CMQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXX 182
           CM N   +L +L+   VP   R+AP+I++V W  PL   IK+NT+G+   A G   A   
Sbjct: 14  CMNNSVSELCVLKCFDVPCKSRRAPRIIEVNWIPPLFDCIKINTNGAFNHASGK--AGFR 71

Query: 183 XXXXXXXXXXXXXERCGFGF-AFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELL 353
                          C       +AE+ A ++AI  A  + W  +WLE DS  V+  +
Sbjct: 72  GVFRNFKGEFIGVFACNLDIPCSDAEVMAVIKAIDLAWVREWRHIWLEVDSAIVLNFI 129


>ref|XP_002516681.1| conserved hypothetical protein [Ricinus communis]
           gi|223544176|gb|EEF45700.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 180

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 42/110 (38%), Positives = 49/110 (44%)
 Frame = +3

Query: 33  ILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXXXXXXXXXXX 212
           I R L + G PR+ P ++ V           VNTDGSA GA G   A             
Sbjct: 30  IRRCLGINGSPRRTPAVMFV-----------VNTDGSALGALGPAGAGGLFRNPSGYVMG 78

Query: 213 XXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLRKK 362
                 G   AF  EL +A  A+  A   GW  LWLESDS+YVV L R K
Sbjct: 79  AFAFSLGTNCAFFVELNSASFAVCKAWEVGWLHLWLESDSIYVVHLFRTK 128


>ref|XP_004308214.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 409

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +3

Query: 3   CMQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXX 182
           CM N    L +L++  +   P QA +I +V W  PL GWIKVNTDG+     G       
Sbjct: 214 CMSNSLTKLRVLKKFGLLCHPCQALRITKVNWHPPLFGWIKVNTDGAWQKTTGKSGYGGI 273

Query: 183 XXXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELL 353
                               + +AE+ A ++AI+ A  + W  + LE DS  V+  L
Sbjct: 274 FRDFHGSFLGAFASNLEIPNSVDAEVMAVIQAIELAWVRDWKHILLEVDSAIVLNFL 330


>ref|XP_004304990.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 202

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 34/117 (29%), Positives = 54/117 (46%)
 Frame = +3

Query: 6   MQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXXX 185
           M N  QDL I++         +AP++++V W  P+ GW+K+N+DG+   A G        
Sbjct: 37  MHNLVQDLQIIKSFGAECRLGRAPRVIEVVWHPPVIGWVKINSDGAWKHAEGVGGFGAIF 96

Query: 186 XXXXXXXXXXXXERCGFGFAFEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLR 356
                              +  AE+ A + AI+ A  + W  +WLE DS  V++ LR
Sbjct: 97  RDFKCHVLGAFSSNIDIPSSVAAEVIAVIVAIELAWVRDWKHIWLEVDSSLVLDYLR 153


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
 Frame = +3

Query: 3    CMQNDQQDLFILRRLRVPGCPRQAPKIVQVTWQKPLPGWIKVNTDGSATGAPGNLTASXX 182
            C+ +D     IL    V    R+   I+ V W+ P P  +KVNTDGS  G      A+  
Sbjct: 987  CLHSDSA---ILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVGG----LAACG 1039

Query: 183  XXXXXXXXXXXXXERCGFGFA--FEAELTAAMRAIQYASSKGWNQLWLESDSVYVVELLR 356
                           C  G A  F AE  A + A+++A+  GW  LWLESDS   + +  
Sbjct: 1040 GLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFS 1099

Query: 357  KKSI 368
              S+
Sbjct: 1100 NSSL 1103