BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00007654
         (4100 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...  1174   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...  1129   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]    1128   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...  1107   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...  1104   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]          1095   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...  1078   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...  1070   0.0  
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]  1053   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]    1047   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]             1045   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]             1043   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]             1038   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]             1032   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]       1032   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                 1023   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]    1021   0.0  
gb|AFB73912.1| polyprotein [Citrus sinensis]                         1019   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                         1019   0.0  
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...  1006   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 1174 bits (3037), Expect = 0.0
 Identities = 615/1168 (52%), Positives = 788/1168 (67%), Gaps = 11/1168 (0%)
 Frame = +2

Query: 5    FEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXX 184
            FE+   + + GKD VSL  V +AL+S EL          I        +           
Sbjct: 153  FENFVQSFIVGKDTVSLEEVRSALHSRELRHKANGTSTDIQPSG-LFTSSRKGRKNGGKK 211

Query: 185  XXXXXXXAKLDKDECAFCHEKGHWKKDCPKLKNKG-KAPQDACVAEGE--SEDEFSLVVS 355
                   AK D D C +C EKGHWK DCPK K +  K    A VAE +  SE++ +LV  
Sbjct: 212  NKPMSKGAKPD-DVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVAD 270

Query: 356  PLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDG 535
                 SD W+LDSG +YH+ P +EWF  +E+++GG + M N + CK  G GSI+++ HDG
Sbjct: 271  EHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDG 330

Query: 536  STRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQ 715
            S   L +VR+VP + KNLISL  L+SKG   + +DGVL+   GS +++KG+ R  LY+ Q
Sbjct: 331  SFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQ 390

Query: 716  GNTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHC 895
            G+TV G+A VA S   ++ +  KLWH+RLGH GE+ +Q L+K+ LL   KV  L+FCEHC
Sbjct: 391  GSTVTGSAHVASSEFHQK-DMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHC 449

Query: 896  VLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMK 1075
            V GK  R KF  AIH T+G LDY+HSD WGP +  SLGG  +FV+ IDD+SR  WVY MK
Sbjct: 450  VFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMK 509

Query: 1076 TKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQ 1255
             K E    F +WK  +ENQTG+KIK LRTDNG E+    F + C   GI RH TVR TPQ
Sbjct: 510  HKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQ 569

Query: 1256 QNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSG 1435
            QNGVAERMN+TL+E+ RCMLSNAGL R+ WAEAV+ A +LINR P + I  KTP+E+WSG
Sbjct: 570  QNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSG 629

Query: 1436 KPVTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDV 1615
            K   DY +L+ FG   YYHV E KLEPRAK+ +F+G   GVKG+R+W    K+++ SR+V
Sbjct: 630  K-AADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNV 688

Query: 1616 TFDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKND--NPVTEDLSDDDEEEV 1789
             FDE  +L+T+    T S    ++   KQVE +   +I  ++D   P  ED     E ++
Sbjct: 689  VFDESPLLRTIVKPTTTSETGSLD---KQVEFQ---VIQNESDLKEPEEEDQEPQTETDI 742

Query: 1790 QTQKPLDQSEPIAVRRPRRE-IHKPAR--FADMVAYALPV---IDDDVPFTFREAVRSPE 1951
                P D  + IA  RPRR  +  P R  F DMV YAL V   +D   P T++EA+ S +
Sbjct: 743  PESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSD 802

Query: 1952 SEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAK 2131
            SEKW  AM +EM+SL KN+TW +   P G+K I CKWVF KK+G      V+YKAR+VA+
Sbjct: 803  SEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVAR 862

Query: 2132 GYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQP 2311
            G+ Q+EG+DYNE+FSPVV+H+SIR+               DVKTAFLHG+LEEEIYMTQP
Sbjct: 863  GFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQP 922

Query: 2312 EGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDES 2491
            +GF+V GKEN VCKL KSLYGLKQSPRQWYKRFD +M+   YTRS YD CVY  +L D+S
Sbjct: 923  DGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDS 982

Query: 2492 FIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLT 2671
            FIYL+LYVDDMLIA++ + +I KLK  L+ EFEMKDLG A+KILGMEI RDR   KL L+
Sbjct: 983  FIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLS 1042

Query: 2672 QKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMY 2851
            Q+ Y++KVL RFGM+ ++K + TP A ++ L+A  +P+++EE++YM +VPYA+AVGSLMY
Sbjct: 1043 QRSYIQKVLARFGMS-SSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMY 1101

Query: 2852 AMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVG 3031
            AMVCTRPD++ AVSVVSR+M  PG+ HW AVK I RY+  T DVGL++  D +    + G
Sbjct: 1102 AMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQC--LVTG 1159

Query: 3032 YCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWL 3211
            Y DSDYAGD+D RRS TGY+FTL  + VSWK+TLQ TV LSTTEAEYMA++EA KE IWL
Sbjct: 1160 YSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWL 1219

Query: 3212 QSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKI 3391
            + L+ DLG+      V+CDS SAI LAK+QV H RTKHIDVRYHF+R    E  I ++K+
Sbjct: 1220 KGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKV 1276

Query: 3392 HTTENPADMLTKVVTSVKFKHCLYLINI 3475
             T +NPADM TK V   KF+HCL L+NI
Sbjct: 1277 GTADNPADMFTKPVPQSKFQHCLDLLNI 1304


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 1129 bits (2919), Expect = 0.0
 Identities = 590/1108 (53%), Positives = 754/1108 (68%), Gaps = 27/1108 (2%)
 Frame = +2

Query: 227  CAFCHEKGHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEFSLVVSPLIS 367
            C +C   GH   +C KL +K          GK  ++   A V + +S+ E  +  +    
Sbjct: 443  CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 502

Query: 368  RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 547
             SD+WIL++ C YHM P ++WF  +E +  G V MG+D  C+  GIG++++K  DG  R 
Sbjct: 503  TSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 562

Query: 548  LTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNT 724
            L+DVR++PNLK++LISL  L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T
Sbjct: 563  LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTT 622

Query: 725  VIGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVL 901
            ++G  AAV+DS +   S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ 
Sbjct: 623  ILGNVAAVSDSLSN--SDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIF 680

Query: 902  GKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTK 1081
            GK KRVKF T+ H TEGILDYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K
Sbjct: 681  GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHK 740

Query: 1082 DEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQN 1261
             +   +F +WKT +E QT RK+K+LRTDNG E+ S  F+  C   GIVRH+TV  TPQQN
Sbjct: 741  YQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQN 800

Query: 1262 GVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKP 1441
            GVAERMNRT++ K RC+LSNAGL +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P
Sbjct: 801  GVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP 860

Query: 1442 VTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTF 1621
              +Y  LRVFG   Y HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F
Sbjct: 861  -ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVF 919

Query: 1622 DEHAML-----KTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEE 1786
             E  ML       V  E  + A  QVE         E   +    D PV E    D    
Sbjct: 920  HESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIE----DSNSS 975

Query: 1787 VQTQKPLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRS 1945
            +  Q P      IA  RP+R I  P R+   A++VAYAL V ++      P T+ EA+ S
Sbjct: 976  IVQQSP---KRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVS 1032

Query: 1946 PESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLV 2125
             +  +W  AM +EM+SL+KN TW++ +LPK KK I CKW+F +K+G  + ++ RYKARL+
Sbjct: 1033 DDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLI 1092

Query: 2126 AKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMT 2305
            AKGY+Q  GID+N+VFSPVVKHSSIR                DVKTAFLHG+LEE+IYM 
Sbjct: 1093 AKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYME 1152

Query: 2306 QPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQD 2485
            QP+GF V GKEN VC+L KSLYGLKQSPRQWYKRFD FM+ QK+ RS YD CVYL K+ D
Sbjct: 1153 QPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVD 1211

Query: 2486 ESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLC 2665
             S IYLLLYVDDMLIA++ + EI KLKAQL+ EFEMKDLG AKKILGMEI+R R S KL 
Sbjct: 1212 GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLY 1271

Query: 2666 LTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSL 2845
            L+QK Y++KVL+RF M  + K VSTPLA H +LS+ L P++D + +YM +VPY++AVGSL
Sbjct: 1272 LSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSL 1330

Query: 2846 MYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGI 3025
            MYAMVC+RPD+S A+SVVSRYM +PGK HW AV+WI RY+  T    L F   G+   G+
Sbjct: 1331 MYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF---GRSRDGL 1387

Query: 3026 VGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAI 3205
            VGY DSD+AGDLD+ RS  GY+FT+    VSWK++LQ+TVALSTTEAEYMA+SEA KEAI
Sbjct: 1388 VGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAI 1447

Query: 3206 WLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLE 3385
            WL+ L   L      I + CDSQSAI L K+Q+ H RTKHIDVRYHF+R ++ EG++ + 
Sbjct: 1448 WLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKIC 1507

Query: 3386 KIHTTENPADMLTKVVTSVKFKHCLYLI 3469
            KI   +NPADM+TK V + KF+ C  L+
Sbjct: 1508 KISIHDNPADMMTKPVPATKFELCSSLV 1535


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 1128 bits (2918), Expect = 0.0
 Identities = 587/1108 (52%), Positives = 757/1108 (68%), Gaps = 25/1108 (2%)
 Frame = +2

Query: 227  CAFCHEKGHWKKDCPKLKNKGKAPQD-------------ACVAEGESEDEFSLVVSPLIS 367
            C +C   GH   +C KL++K K  +              A V + +S+ E  +  +    
Sbjct: 145  CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 204

Query: 368  RSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRV 547
             SD+WILD+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R 
Sbjct: 205  TSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 264

Query: 548  LTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNT 724
            L DVR++PNLK++LISL  L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T
Sbjct: 265  LLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTT 324

Query: 725  VIGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVL 901
            ++G  AAV+DS +   S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ 
Sbjct: 325  ILGNVAAVSDSLSN--SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIF 382

Query: 902  GKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTK 1081
            GK KRVKF T+ H TEGILDYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K
Sbjct: 383  GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHK 442

Query: 1082 DEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQN 1261
             +   +F +WKT +E QT RK+K+LRTDNG E  S  F+  C   GIVRH+TV  TPQQN
Sbjct: 443  YQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQN 502

Query: 1262 GVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKP 1441
            GVAERMNRT++ K RCMLSNA L +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P
Sbjct: 503  GVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP 562

Query: 1442 VTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTF 1621
              +Y  LRVFG   Y HV   KLEPR  + +F+G  SGVKGY+LWC E+KK++ SR+V F
Sbjct: 563  -ANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVF 621

Query: 1622 DEHAMLKTVTSEKTDSALQQVERTPKQVE-VEEMAIIPAKNDNPVTED--LSDDDEEEVQ 1792
             E  ML    S  T+  ++  E+   QVE +      P K D  + +D  + +D +  + 
Sbjct: 622  HESIMLHDKPS--TNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIV 679

Query: 1793 TQKPLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPE 1951
             Q P      IA  RP+R    P R+   A++VAYAL V ++      P T+ +A+ S +
Sbjct: 680  QQSP---KRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDD 736

Query: 1952 SEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAK 2131
              +W  AM +EM+SL+KN +W++ +LPK KK I CKW+F +K+G    ++ RYKARLVAK
Sbjct: 737  CNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAK 796

Query: 2132 GYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQP 2311
            GY+Q  GID+N+VFSPVVKHSSIR                DVKTAFLHG+LEE+IYM QP
Sbjct: 797  GYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQP 856

Query: 2312 EGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDES 2491
            EGF V GKEN VC+L KSLYGLKQSPRQWYKRFD FM+ QK+ RS YD CVYL K+ D S
Sbjct: 857  EGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGS 915

Query: 2492 FIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLT 2671
             IYLLLYVDDMLIA++ + EI KLKAQL+ EFEMKDLG AKKILGMEI+R+R SGKL L+
Sbjct: 916  AIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLS 975

Query: 2672 QKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMY 2851
            QK Y++KVL RF M  + K VST LA H +LS+ L P++  + +YM +VPY++AV SLMY
Sbjct: 976  QKCYIEKVLHRFNM-HDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMY 1034

Query: 2852 AMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVG 3031
            AMVC+RPD+S A+SVVSRYM +PGK HW AV+WI RY+  T    L F   G+   G+VG
Sbjct: 1035 AMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF---GRSSDGLVG 1091

Query: 3032 YCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWL 3211
            Y DSD+AGDLD+RRS TGY+FT+    VSWK++LQ+TVALSTTEAEYMA+SEA KE IWL
Sbjct: 1092 YVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWL 1151

Query: 3212 QSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKI 3391
            + L  +L      I + CDSQSAI L K+Q+ H RTKHID+RYHF+R ++ EG++ + KI
Sbjct: 1152 RGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKI 1211

Query: 3392 HTTENPADMLTKVVTSVKFKHCLYLINI 3475
             T +NP DM+TK V + KF+ C  L+ +
Sbjct: 1212 STHDNPVDMMTKPVPATKFELCSSLVGV 1239


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1107 bits (2864), Expect = 0.0
 Identities = 572/1113 (51%), Positives = 745/1113 (66%), Gaps = 25/1113 (2%)
 Frame = +2

Query: 215  DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLISRS 373
            +K  C +C  K H   +C K+     KNK  GK    +  A  +   +  +V +  ++  
Sbjct: 228  NKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGH 287

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEIN-GGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 550
            DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG TR L
Sbjct: 288  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTV 727
             +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G T+
Sbjct: 348  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
             G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK
Sbjct: 408  TGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGK 467

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
             KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+
Sbjct: 468  HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDD 527

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
                F  WK  IE QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGV
Sbjct: 528  TFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 587

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  
Sbjct: 588  AERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMP-A 646

Query: 1448 DYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDE 1627
            DY  L+VFG   Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1628 HAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEV 1789
              M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  ++V
Sbjct: 707  SVMFTNSLPSEHVPE--KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDV 764

Query: 1790 QTQKPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAV 1939
            Q   P+ Q E   PIA R+ +R    P R     ++  YAL   +       P T++EAV
Sbjct: 765  QQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAV 824

Query: 1940 RSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKAR 2119
            R  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +YKAR
Sbjct: 825  RCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKAR 884

Query: 2120 LVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIY 2299
            LVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IY
Sbjct: 885  LVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIY 944

Query: 2300 MTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKL 2479
            M QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ +
Sbjct: 945  MDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV 1004

Query: 2480 QDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGK 2659
             + S IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR SG 
Sbjct: 1005 -NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1063

Query: 2660 LCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVG 2839
            L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++AVG
Sbjct: 1064 LFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVG 1122

Query: 2840 SLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQ 3019
            SLMYAMVC+RPD+S A+S+VSRYM +PGK HW AV+WI RY+  T    L F   G+  +
Sbjct: 1123 SLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GRTDK 1179

Query: 3020 GIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKE 3199
            G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE
Sbjct: 1180 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239

Query: 3200 AIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNIL 3379
             IWL+ L  +L   +  I +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + 
Sbjct: 1240 LIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLK 1299

Query: 3380 LEKIHTTENPADMLTKVVTSVKFKHCLYLINIL 3478
            + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1300 VCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1104 bits (2855), Expect = 0.0
 Identities = 570/1113 (51%), Positives = 743/1113 (66%), Gaps = 25/1113 (2%)
 Frame = +2

Query: 215  DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLISRS 373
            +K  C +C  K H   +C K+     KNK  GK    +  A  +   +  +V +  ++  
Sbjct: 228  NKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGH 287

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEIN-GGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 550
            DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG TR L
Sbjct: 288  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTV 727
             +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G T+
Sbjct: 348  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
             G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK
Sbjct: 408  TGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGK 467

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
             KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+
Sbjct: 468  HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDD 527

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
                F  WK  IE QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGV
Sbjct: 528  TFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 587

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  
Sbjct: 588  AERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-A 646

Query: 1448 DYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDE 1627
            DY  L+VFG   Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1628 HAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEV 1789
              M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  ++V
Sbjct: 707  SVMFTNSLPSEHVPE--KELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDV 764

Query: 1790 QTQKPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAV 1939
            Q   P+ Q E   PIA R+ +R    P R     ++  YAL   +       P T++EAV
Sbjct: 765  QQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAV 824

Query: 1940 RSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKAR 2119
            R  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +YKAR
Sbjct: 825  RCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKAR 884

Query: 2120 LVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIY 2299
            LVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IY
Sbjct: 885  LVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIY 944

Query: 2300 MTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKL 2479
            M QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ +
Sbjct: 945  MDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV 1004

Query: 2480 QDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGK 2659
             + S IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKIL MEISRDR SG 
Sbjct: 1005 -NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGL 1063

Query: 2660 LCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVG 2839
            L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++AVG
Sbjct: 1064 LFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVG 1122

Query: 2840 SLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQ 3019
            SLMYAMVC+RPD+S A+S+VSRYM +PGK HW  V+WI RY+  T    L F   G+  +
Sbjct: 1123 SLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKF---GRTDK 1179

Query: 3020 GIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKE 3199
            G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE
Sbjct: 1180 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239

Query: 3200 AIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNIL 3379
             IWL+ L  +L   +  I +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + 
Sbjct: 1240 LIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLK 1299

Query: 3380 LEKIHTTENPADMLTKVVTSVKFKHCLYLINIL 3478
            + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1300 VCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 1095 bits (2831), Expect = 0.0
 Identities = 567/1113 (50%), Positives = 740/1113 (66%), Gaps = 25/1113 (2%)
 Frame = +2

Query: 215  DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLISRS 373
            +K  C +C  K H   +C K+     KNK  GK    +     +   +  +V +  ++  
Sbjct: 230  NKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGH 289

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEIN-GGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 550
            DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG TR L
Sbjct: 290  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 349

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTV 727
             +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G T+
Sbjct: 350  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 409

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
             G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK
Sbjct: 410  PGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGK 469

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
             KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+
Sbjct: 470  HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDD 529

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
                F  WK  IE QT RK+K+L TDNGGE+ S  F + C + GIVRH T+  TPQQNGV
Sbjct: 530  TFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 589

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  
Sbjct: 590  AERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-A 648

Query: 1448 DYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDE 1627
            DY  L+VFG   Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E
Sbjct: 649  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 708

Query: 1628 HAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEV 1789
              M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  ++V
Sbjct: 709  SVMFTNSLPSEHVPE--KELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDAHDDV 766

Query: 1790 QTQKPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAV 1939
            Q   P+ Q E    IA R+ +R    P R     ++  YAL   +       P T++EAV
Sbjct: 767  QQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAV 826

Query: 1940 RSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKAR 2119
            R  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+        +YKAR
Sbjct: 827  RCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKAR 886

Query: 2120 LVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIY 2299
            LVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IY
Sbjct: 887  LVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIY 946

Query: 2300 MTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKL 2479
            M QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ +
Sbjct: 947  MDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV 1006

Query: 2480 QDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGK 2659
             + S IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR SG 
Sbjct: 1007 -NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1065

Query: 2660 LCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVG 2839
            L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++AVG
Sbjct: 1066 LFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVG 1124

Query: 2840 SLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQ 3019
            SLMYAMVC+RPD+S A+S+VSRYM +PGK HW A++WI RY+  T    L F   G+  +
Sbjct: 1125 SLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKF---GRTDK 1181

Query: 3020 GIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKE 3199
            G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE
Sbjct: 1182 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1241

Query: 3200 AIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNIL 3379
             IWL+ L  +L   +  I +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + 
Sbjct: 1242 LIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLK 1301

Query: 3380 LEKIHTTENPADMLTKVVTSVKFKHCLYLINIL 3478
            + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1302 VCKICTHDNPADMMTKPIPVAKFELCSSLVGLI 1334


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score = 1078 bits (2787), Expect = 0.0
 Identities = 557/1081 (51%), Positives = 724/1081 (66%), Gaps = 25/1081 (2%)
 Frame = +2

Query: 215  DKDECAFCHEKGHWKKDCPKL-----KNK--GKAPQDACVAEGESEDEFSLVVSPLISRS 373
            +K  C +C  K H   +C K+     KNK  GK    +  A  +   +  +V +  ++  
Sbjct: 228  NKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGH 287

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEIN-GGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 550
            DEWILDS C++H+   + WF +++ +  G VV MG+DN C   GIGS+++K  DG TR L
Sbjct: 288  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTV 727
             +VRY+P + +NLISL  L+++G   +  DGVLK + GSLV +KG +    LY  +G T+
Sbjct: 348  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTL 407

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
             G+ + A +    E     LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK
Sbjct: 408  TGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGK 467

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
             KRV+F T++H T+G LDYVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+
Sbjct: 468  HKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDD 527

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
                F  WK  IE QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGV
Sbjct: 528  TFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGV 587

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRT++ + RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  
Sbjct: 588  AERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-A 646

Query: 1448 DYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDE 1627
            DY  L+VFG   Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1628 HAML-KTVTSEKTDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEV 1789
              M   ++ SE      ++++R   QVE  +    + + P    +    D++DDD  ++V
Sbjct: 707  SVMFTNSLPSEHVPE--KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDV 764

Query: 1790 QTQKPLDQSE---PIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAV 1939
            Q   P+ Q E   PIA R+ +R    P R     ++  YAL   +       P T++EAV
Sbjct: 765  QQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAV 824

Query: 1940 RSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKAR 2119
            R  +SE W  AM EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +YKAR
Sbjct: 825  RCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKAR 884

Query: 2120 LVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIY 2299
            LVA+GY+Q  G+DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IY
Sbjct: 885  LVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIY 944

Query: 2300 MTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKL 2479
            M QPEGF V GKE +VCKL +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ +
Sbjct: 945  MDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV 1004

Query: 2480 QDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGK 2659
             + S IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR SG 
Sbjct: 1005 -NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1063

Query: 2660 LCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVG 2839
            L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D E +YM +VPY++AVG
Sbjct: 1064 LFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVG 1122

Query: 2840 SLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQ 3019
            SLMYAMVC+RPD+S A+S+VSRYM +PGK HW AV+WI RY+  T    L F   G+  +
Sbjct: 1123 SLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GRTDK 1179

Query: 3020 GIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKE 3199
            G++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE
Sbjct: 1180 GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239

Query: 3200 AIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNIL 3379
             IWL+ L  +L   +  I +HCDS+SAI+L K+Q+ H RTKHID++YHFVR+++EE + L
Sbjct: 1240 LIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIEEDDWL 1299

Query: 3380 L 3382
            +
Sbjct: 1300 I 1300


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 1070 bits (2768), Expect = 0.0
 Identities = 559/1103 (50%), Positives = 732/1103 (66%), Gaps = 16/1103 (1%)
 Frame = +2

Query: 218  KDECAFCHEKGHWKKDCPKLKNKGKAPQDACV-----AEGESEDEFSLVVSPLISRSDEW 382
            K  C +C +K H+ ++C KL+NK K   D        AE     +  +V +  ++  DEW
Sbjct: 233  KKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEW 292

Query: 383  ILDSGCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 559
            ILD+ C++H+   ++WF +++ + N  VV MG+DN  +  GIGS+++K HDG TR L DV
Sbjct: 293  ILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352

Query: 560  RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGT 736
            R++P + +NLISL  L+++G   +   GV+K + GSLV + G +   NLY  +G+T+ G+
Sbjct: 353  RHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 412

Query: 737  AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKR 916
               A    ++ S+   LWHMRLGH  E  +  L K+ LL       + FCEHCV GK KR
Sbjct: 413  VTAAAVTKDEPSKT-NLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKR 471

Query: 917  VKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLG 1096
            VKF T++H T+GILDYVH+D+WGPS+ PSLGG  Y +T IDD+SR+ W Y +K KD+   
Sbjct: 472  VKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFA 531

Query: 1097 IFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAER 1276
             F + K  IE QT +++KVL TDNGGE+ SD F + C K GIVRH T+  TPQQNGVAER
Sbjct: 532  AFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAER 591

Query: 1277 MNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYD 1456
            MNRT++ K RCMLSNA + ++ WAEA   A +LINR PS  +  KTP+E+WSG P  DY 
Sbjct: 592  MNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMP-ADYS 650

Query: 1457 SLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAM 1636
             LRVFG   Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR+V F+E  M
Sbjct: 651  QLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVM 710

Query: 1637 LKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPL--D 1810
                            E+    V+VE +       D+  TE + +D  + VQ    +   
Sbjct: 711  FNDSLPTDVIPGGSDEEQQYVSVQVEHV-------DDQETEIVGNDVNDTVQHSPSVLQP 763

Query: 1811 QSEPIAVRRPRREIHKPARF---ADMV----AYALPVIDDDVPFTFREAVRSPESEKWKG 1969
            Q EPIA RR +R    P R     DMV    +YA  V +   P T+ EAV S + EKW  
Sbjct: 764  QDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWIS 823

Query: 1970 AMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKE 2149
            A++EEMQSL+KN TW++  LPK KK + CKW+F +K+G       R+K RLVAKG++Q  
Sbjct: 824  AIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIA 883

Query: 2150 GIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVA 2329
            G+DYN+VFSPVVKHSSIR                DVKT FLHG+LEEEIYM QPEGF V 
Sbjct: 884  GVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVP 943

Query: 2330 GKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLL 2509
            GKE++VCKL +SLYGLKQSPRQWYKRFD FM+   + RS++D CVY+ K  + S IYLLL
Sbjct: 944  GKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYI-KFVNGSPIYLLL 1002

Query: 2510 YVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLK 2689
            YVDDMLIA++S+ +I  LK QL+ EF+MKDLG AKKILGMEI+RDR SG L L+Q+ Y+K
Sbjct: 1003 YVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIK 1062

Query: 2690 KVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTR 2869
            KVLQRF M  + K VSTP+APH KLSA      DE+ +YM +VPY++AVGSLMYAMVC+ 
Sbjct: 1063 KVLQRFNM-HDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSW 1121

Query: 2870 PDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDY 3049
            PD+S A+S+VSRYM +PGK HW AV+WI RY+  T D  L F   G++ +G+VGY DSD+
Sbjct: 1122 PDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKF---GRIDKGLVGYVDSDF 1178

Query: 3050 AGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLED 3229
            A DLDKRRS TGY+FT+    VSWK+TLQ  VA STTEAEYMA++EA KE++WL+ L  +
Sbjct: 1179 AADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAE 1238

Query: 3230 LGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENP 3409
            L      I + CDSQSAI L K+Q+ H RTKHID++YH+VR+I+ +G + + KI   +NP
Sbjct: 1239 LCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNP 1298

Query: 3410 ADMLTKVVTSVKFKHCLYLINIL 3478
            ADM+TK +   KF+ C  L+ I+
Sbjct: 1299 ADMMTKPIPVAKFELCSSLVGIV 1321


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 1053 bits (2723), Expect = 0.0
 Identities = 562/1116 (50%), Positives = 736/1116 (65%), Gaps = 36/1116 (3%)
 Frame = +2

Query: 227  CAFCHEKGHWKKDCPKLKN---KGKAPQDACVA-------------EGESEDEFSLVVSP 358
            C  C EKGH++K+CP+ +     G   + A V              EGE  D  ++  S 
Sbjct: 556  CFHCKEKGHFRKNCPQRQKGIGSGVGMEIAQVVVAQKYXEKXDSSDEGEGGDVLTVSTS- 614

Query: 359  LISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGS 538
              S ++ WILD+G +YHM+  ++ F  F+E NG V  +G+D      G GS+++K +DG 
Sbjct: 615  --SSAESWILDTGASYHMAYSRDLFTTFKEWNGSVK-LGDDGELGVKGSGSVQIKMYDGL 671

Query: 539  TRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQG 718
             R L +  YVP L+KNLIS+G L+  G   +   GVL+ + G+LVV+KG  ++ +Y   G
Sbjct: 672  VRTL-NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMG 730

Query: 719  NTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCV 898
            ++V+GTAAV      +E    +LWH RLGH  EK L  L+KQGLL   +  KL FCE CV
Sbjct: 731  SSVLGTAAV------EEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCV 784

Query: 899  LGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKT 1078
            +GKQ+RVKF    H T G+L+Y+HSD+WGPS   S  G  Y+VTFIDDFSR+VWVY +K 
Sbjct: 785  MGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKA 844

Query: 1079 KDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQ 1258
            KDEV G F +WKT +E +TG+ +K LRTDNG E+ +  F E C K GIVRH TVR TPQQ
Sbjct: 845  KDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQ 904

Query: 1259 NGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGK 1438
            NGVAERMN+TLV++ RCM  +AGL ++ WAEAV  A +L+NR PS+AI  KTP EVWSGK
Sbjct: 905  NGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGK 964

Query: 1439 PVTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESK--KILFSRD 1612
            P ++Y  L++FG   Y HV + KLEPRA + +F+G  +GVKGYRLWC E +  K + SRD
Sbjct: 965  P-SNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRD 1023

Query: 1613 VTFDEHAML-------KTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSD 1771
            VTFDE AM            + KTD    Q      +VE E    + A  +N V      
Sbjct: 1024 VTFDESAMFGQRKEFGDLAGTSKTDLGANQ------KVEFE----VDAPMENGV------ 1067

Query: 1772 DDEEEVQTQKPLDQSEPIAVRRPRREIHKPARFADM--------VAYALPVIDD---DVP 1918
            DD  E Q     + S+ IA  RPRREI +P R+ D         VA+AL V ++   + P
Sbjct: 1068 DDTSEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEP 1127

Query: 1919 FTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKN 2098
             +++EA+ S +S+KW  +M++EM SL+KN+TW++  LP+G K + CKW+F  KDG     
Sbjct: 1128 RSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDE 1187

Query: 2099 DVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHG 2278
              +YK+RLVAK            VFSPVVKH SIR+               DVKTAFLHG
Sbjct: 1188 PPKYKSRLVAK------------VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHG 1235

Query: 2279 DLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDH 2458
            +LEEEIYM QPEGF  + K + VC L KSLYGLKQSPRQWYKRFD FM+  ++ R++YD 
Sbjct: 1236 NLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDS 1295

Query: 2459 CVYLRKLQDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEIS 2638
            CVY + L D SFIYLLLYVDDMLIA++++ EI+KLK  L+ EFEMKDLG AKKILGMEI 
Sbjct: 1296 CVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIW 1355

Query: 2639 RDRTSGKLCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKV 2818
            RDR +G L ++Q++Y++K++Q F M +++K VSTPLA H K      P  DEE +YM  V
Sbjct: 1356 RDRDAGLLYVSQQKYIEKLMQAFHM-DHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSV 1414

Query: 2819 PYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFE 2998
            PY++ VGSLMYAMVCTRPD++ AVSVVSR+M +PGK HW AVKWI+RY+  +  V LV+ 
Sbjct: 1415 PYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVY- 1473

Query: 2999 QDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMA 3178
             +G +  G+VG+ DSD+ GDL KRRS T Y+FTL    +SW+++LQ TVALSTTEAEYM+
Sbjct: 1474 GNGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMS 1533

Query: 3179 VSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREI 3358
            ++E VKE +WL   L  LG+     +++CDSQSA+ LAKN V H RTKHIDVR +F+R++
Sbjct: 1534 LTEGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDV 1593

Query: 3359 LEEGNILLEKIHTTENPADMLTKVVTSVKFKHCLYL 3466
            +EE    +EK+ T  NPADMLTK +T+ KFKH L L
Sbjct: 1594 IEEKLFSIEKVATEVNPADMLTKPITTEKFKHSLGL 1629


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 1047 bits (2707), Expect = 0.0
 Identities = 552/1102 (50%), Positives = 725/1102 (65%), Gaps = 25/1102 (2%)
 Frame = +2

Query: 218  KDECAFCHEKGHWKKDCPKLKNK-----GKAPQDACVAEG-ESEDEFSLVVSPLISRSDE 379
            KD C       HWK++C + K K     G++ Q A V  G   ED   L +S        
Sbjct: 203  KDGCFIYGSPDHWKRNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELLAISTSSGAPRH 262

Query: 380  WILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 559
            W LD+ CT+H    ++WF  ++E N   V MGND+  +  GIG ++++ HDG  R L +V
Sbjct: 263  WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNV 322

Query: 560  RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGT 736
            R+ P L +NLISL  ++  G     ++GVLK   G +V +KG I+ +N+Y   G+TV G 
Sbjct: 323  RHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGG 382

Query: 737  AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKR 916
            A V       E +  +LW  RLGH  ++ LQ L K+  L  V    L+FC +C LGKQ R
Sbjct: 383  AGVCT-----EEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTR 437

Query: 917  VKFG--TAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEV 1090
            V F   ++ + ++G+LDY+H+DVWGPS T S GG  YFV+FIDDFSR+VW++ MKTK+EV
Sbjct: 438  VSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEV 497

Query: 1091 LGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVA 1270
               F +WK  + NQTGRKIK LR+DNGGEY    F ++C   GI RHFTV+++PQQNGVA
Sbjct: 498  FTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVA 557

Query: 1271 ERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTD 1450
            ERMNRTL+EK R M  +AGL  + WAEA  +A +LINR PS AI  K   EVWSGKPV D
Sbjct: 558  ERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPV-D 616

Query: 1451 YDSLRVFGSLVYYHV---KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTF 1621
            Y +LRVFG   Y H+   + +KLEP++   LF+G   GVKGY+LW + ++K + SRDV F
Sbjct: 617  YSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVF 676

Query: 1622 DEHAMLKTVTSEKT----DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEV 1789
            DE   +    ++ +    ++ ++Q E+   +V +EE    P     P      +   +  
Sbjct: 677  DEREAISISLAKPSVADSEAQVEQNEQGNDEVAIEE----PEHQQQPTVMAQVEQSPQRG 732

Query: 1790 QT----QKPLDQSEPIAVRRPRREIHKPARFA----DMVAYALPVIDDDVPFTFREAVRS 1945
            Q     Q P      IA+ +P+R      RF     + V+ AL +   D P T+ +A+ S
Sbjct: 733  QNSPIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGD-PTTYEDAIES 791

Query: 1946 PESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLV 2125
             ES  W GAM EEM+SL KN  W++   PK +K +GCKWVF KK+G    + + YKARLV
Sbjct: 792  VESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLV 851

Query: 2126 AKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMT 2305
            AKGY+QKEG+DY+E+FSPVVKH+SIR+               DVKTAFLHGDLEE+IYM+
Sbjct: 852  AKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMS 911

Query: 2306 QPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQD 2485
            QPEGF   GKEN VC+L KSLYGLKQSPRQWYK FD +M+   YTR +YD CVY    +D
Sbjct: 912  QPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFED 971

Query: 2486 ESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLC 2665
               I LLLYVDDMLIA +  L+I KLK +L  EF+MKDLG A+KILG+EI RDR +GK+ 
Sbjct: 972  GKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIW 1031

Query: 2666 LTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSL 2845
            L+Q++Y+ K+L+RF M E  K VS PLA H +LSA+  P + +E D M  VPYA+AVG L
Sbjct: 1032 LSQEKYIMKILERFNMAE-AKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCL 1090

Query: 2846 MYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQG- 3022
            MYAM+CTRPD++QA+SVVS+YM +PGK HW AVKWI +Y+ NT  +G++FE+  + G+  
Sbjct: 1091 MYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFER--RQGEAC 1148

Query: 3023 IVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEA 3202
            + G+ DSD+AGDLD+RRST GY+FT    PVSWK+TLQ+  ALSTTEAEYMA++EA KEA
Sbjct: 1149 VAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEA 1208

Query: 3203 IWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILL 3382
            IWL  L   LGV Q+ ++V CDSQSAIHLAKNQV HARTKHID RYH +R+ +E G I++
Sbjct: 1209 IWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIV 1268

Query: 3383 EKIHTTENPADMLTKVVTSVKF 3448
            EK+HT +N AD LTK V+  K+
Sbjct: 1269 EKVHTDDNAADFLTKPVSVEKY 1290


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1045 bits (2703), Expect = 0.0
 Identities = 555/1108 (50%), Positives = 740/1108 (66%), Gaps = 23/1108 (2%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 373
            +C  C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 553
            D WI+DSG T+HM+P ++WFF++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554  DVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI 730
             VR+V  LKKNL+S+G L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+ 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 731  -GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
               A+VA +  E   E   +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF      ++ ILD +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F  +K +IE +TG+KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL+E+ R ML  AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV 
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV- 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY SL VFG  VY  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV 
Sbjct: 644  DYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703

Query: 1619 FDEHAMLKTVTSEKT--DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQ 1792
            F E+ +     ++ T  ++A+ Q+E   K+ +  E          PV E+   DD     
Sbjct: 704  FAENELQSKQKNDSTSKETAIVQMEEKSKESDSSEA--------EPVHEEQEPDDVNN-- 753

Query: 1793 TQKPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESE 1957
                        VRR  R+  KP+  +D V     AY L + ++  P TF EA+   ++ 
Sbjct: 754  -----------GVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDAS 801

Query: 1958 KWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKG 2134
            +W  AM EEM++L +NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KG
Sbjct: 802  QWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKG 859

Query: 2135 YAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPE 2314
            YAQKEGID+NE+FSPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPE
Sbjct: 860  YAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPE 919

Query: 2315 GFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESF 2494
            GFK  GKEN VC+L KSLYGLKQ+PR WYKRFD F++   Y+R   DHC Y ++     F
Sbjct: 920  GFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDF 979

Query: 2495 IYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQ 2674
            I LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+Q
Sbjct: 980  IILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQ 1039

Query: 2675 KQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYA 2854
            K YL+KVL+RF M ++ K +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYA
Sbjct: 1040 KNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 2855 MVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGY 3034
            M+CTRPDI+QAV VVSR+M DPGK HW+AVK I+RYI  T  V + F   G     + GY
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGY 1155

Query: 3035 CDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQ 3214
             DSD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q
Sbjct: 1156 VDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQ 1215

Query: 3215 SLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIH 3394
             L+E+LG  Q+ I V+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIH
Sbjct: 1216 RLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIH 1275

Query: 3395 TTENPADMLTKVVTSVKFKHCLYLINIL 3478
            T +N AD +TK + + KF  C  L  +L
Sbjct: 1276 TNDNLADAMTKSINTDKFIWCRSLYGLL 1303


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1043 bits (2697), Expect = 0.0
 Identities = 554/1099 (50%), Positives = 743/1099 (67%), Gaps = 21/1099 (1%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 373
            +C  C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 553
            D WI+DSG T+HM+P ++WFF++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554  DVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI 730
             VR+V  LKKNL+S+G L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+ 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 731  -GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
               A+VA S  E   E   +WH RLGH  E+ L+ LA++ LL  +K   L FCEHCV+ K
Sbjct: 409  EADASVAASSQE---ETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF      ++ ILD +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F  +K +IE +T +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL+E+ R ML  AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV 
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV- 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY SL VFG  VY  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV 
Sbjct: 644  DYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703

Query: 1619 FDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQ 1798
            F E+ +    + +K DS       T K+  + +M     ++D+   E + ++       Q
Sbjct: 704  FAENELQ---SEQKNDS-------TSKETAIVQMEEKSKESDSSEAESVHEE-------Q 746

Query: 1799 KPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKW 1963
            +P D ++   VRR  R+  KP+  +D V     AY L + ++  P TF EA+   ++ +W
Sbjct: 747  EPDDVND--GVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQW 803

Query: 1964 KGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYA 2140
              AM EEM++L +NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYA
Sbjct: 804  MTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYA 861

Query: 2141 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2320
            QKEGID+NE+FSPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGF
Sbjct: 862  QKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGF 921

Query: 2321 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIY 2500
            K  GKEN VC+L KSLYGLKQ+PR WYKRFD F++   Y+R   DHC Y ++     FI 
Sbjct: 922  KEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFII 981

Query: 2501 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2680
            LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK 
Sbjct: 982  LLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKN 1041

Query: 2681 YLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 2860
            YL+KVL+RF M ++ K +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+
Sbjct: 1042 YLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMI 1100

Query: 2861 CTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3040
            CTRPDI+QAV VVSR+M DPGK HW+AVK I+RYI  T  V + F   G     + GY D
Sbjct: 1101 CTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVD 1157

Query: 3041 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3220
            SD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3221 LEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTT 3400
            +E+LG  Q+ I V+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 3401 ENPADMLTKVVTSVKFKHC 3457
            +N AD++TK + + KF  C
Sbjct: 1278 DNLADVMTKPINADKFVWC 1296


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1038 bits (2684), Expect = 0.0
 Identities = 550/1099 (50%), Positives = 740/1099 (67%), Gaps = 21/1099 (1%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 373
            +C  C  KGH KK+C  +K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 553
            D WI+DSG T+HM+P ++WF+++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554  DVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI 730
             VR+V  LKKNL+S+G L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+ 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 731  -GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
               A+VA +  E   E   +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF      ++ ILD +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F  +K +IE +T +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL+E+ R ML  AG+ +  WAEA   A ++INR PS+AI  KTP+E+W GKPV 
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPV- 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY SL VFG  VY  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV 
Sbjct: 644  DYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703

Query: 1619 FDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQ 1798
            F E+ +    + +K DS       T K+  + +M     ++D+   E + ++       Q
Sbjct: 704  FAENELQ---SEQKNDS-------TSKETAIVQMEEKSKESDSSEAESVHEE-------Q 746

Query: 1799 KPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKW 1963
            +P D ++   VRR  R+  KP+  +D V     AY L + ++  P TF EA+   ++ +W
Sbjct: 747  EPDDVND--GVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQW 803

Query: 1964 KGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYA 2140
              AM EEM++L +NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYA
Sbjct: 804  MTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYA 861

Query: 2141 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2320
            QKEGID+NE+FSPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGF
Sbjct: 862  QKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGF 921

Query: 2321 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIY 2500
            K  GKEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y ++     FI 
Sbjct: 922  KEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFII 981

Query: 2501 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2680
            LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK 
Sbjct: 982  LLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKN 1041

Query: 2681 YLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 2860
            YL+KVL+RF M ++ K +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+
Sbjct: 1042 YLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMI 1100

Query: 2861 CTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3040
            CTRPDI+QAV VVSR+M DPGK HW+AVK I+RYI  T  V + F   G     + GY D
Sbjct: 1101 CTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVWGYVD 1157

Query: 3041 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3220
            SD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3221 LEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTT 3400
            +E+LG  Q+ I V+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 3401 ENPADMLTKVVTSVKFKHC 3457
            +N AD++TK + + KF  C
Sbjct: 1278 DNLADVMTKPINTDKFVWC 1296


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1032 bits (2669), Expect = 0.0
 Identities = 547/1101 (49%), Positives = 736/1101 (66%), Gaps = 23/1101 (2%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG---ESEDEFSLVVSPLISRS------- 373
            +C  C  KGH KK+C   K  G+   +A  ++G    + D+  ++ S   + S       
Sbjct: 229  KCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLN 288

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 553
            D WI+DSG T+HM+P ++WF+++E I+ G VYMGND+A +  G+G+IRLK HDG+ R + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554  DVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI 730
             VR+V  LKKNL+S+G L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+ 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 731  -GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
               A+VA +  E   E   +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF      ++ ILD +HSDVW   K  SLGG  YFV+FIDD+SRR+WVY +K K +
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVWESPKL-SLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F  +K +IE +TG+KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL+E+ R ML  A + +  WAEAV  A ++INR PS+ I  KTP+E+W GKPV 
Sbjct: 585  AERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPV- 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY SL VFG  VY  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV 
Sbjct: 644  DYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVV 703

Query: 1619 FDEHAMLKTVTSEKT--DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQ 1792
            F E+ +     ++ T  ++A+ Q+E   K+ +                   S + E   +
Sbjct: 704  FAENELQSEQKNDSTFKETAILQIEEKSKESD-------------------SSEAESVHE 744

Query: 1793 TQKPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESE 1957
             Q+P D +    VRR  R+  KP+  +D V     AY L + ++  P TF EA+   ++ 
Sbjct: 745  EQEPDDVNN--GVRRSTRQTQKPSWQSDYVMTGHDAYCL-IAEEGEPSTFHEALNGSDAS 801

Query: 1958 KWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKG 2134
            +W  A+ EEM++L+KNKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KG
Sbjct: 802  QWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKG 859

Query: 2135 YAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPE 2314
            YAQKEGID+NE+FSPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPE
Sbjct: 860  YAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPE 919

Query: 2315 GFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESF 2494
            GFK  GKEN VC+L KSLYGLKQ+PR WYKRFD F++   Y R   DHC Y ++     F
Sbjct: 920  GFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDF 979

Query: 2495 IYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQ 2674
            I LLLYVDD+L+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+Q
Sbjct: 980  IILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQ 1039

Query: 2675 KQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYA 2854
            K YL+KVL+RF M ++ K +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYA
Sbjct: 1040 KNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 2855 MVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGY 3034
            M+CTRPDI+QAV VVSR+M DPGK HW+AVK I+RYI  T  V + F   G     + GY
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGY 1155

Query: 3035 CDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQ 3214
             DSD+AGD DKR+STTGY+FTL    VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q
Sbjct: 1156 VDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQ 1215

Query: 3215 SLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIH 3394
             L+E+LG  Q+ I V+CDSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIH
Sbjct: 1216 RLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIH 1275

Query: 3395 TTENPADMLTKVVTSVKFKHC 3457
            T +N AD++TK + + KF  C
Sbjct: 1276 TNDNLADVMTKPINADKFVWC 1296


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 1032 bits (2669), Expect = 0.0
 Identities = 539/1114 (48%), Positives = 734/1114 (65%), Gaps = 24/1114 (2%)
 Frame = +2

Query: 209  KLDKDECAFCHEKGHWKKDCPKLKNKGKAPQ--DACVAEGESEDEFS---LVVSPLISRS 373
            K  K +C +C ++GH+ +DC + K K    +  DA VA  +  D +    L+V+   +  
Sbjct: 230  KKKKRKCFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTK 289

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSI-RLKNHDGSTRVL 550
             +W++DSGC++H+ P K  F+ +E ++GG V MGN+N C   GI    R +      R L
Sbjct: 290  GQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSL 349

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVI 730
             +VR+ P LK+NLISLG L+S G     R G L+   G+ +V+KG+  N LY  QG++V 
Sbjct: 350  HEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVP 409

Query: 731  ---GTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVL 901
               G +AV+      E +  KLWH+RLGH   K LQ L+KQGLL   ++ +L+FCE+C+ 
Sbjct: 410  VQEGVSAVS------EEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIF 463

Query: 902  GKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTK 1081
            GK  R KF    H ++ +LDY H D WGP++ PSL G  YF++ IDD+SR+VW+Y +K K
Sbjct: 464  GKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIK 523

Query: 1082 DEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQN 1261
            D+ L  F  WK+ +ENQ+  K+K LRTDNG E+ S  F+E C K+GI RH TVR TPQQN
Sbjct: 524  DQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQN 583

Query: 1262 GVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKP 1441
            G+AERMNRTLV+K RCML N+ L R  WAEAV  A +L+NR PSSAIG KTP E+W+GKP
Sbjct: 584  GLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKP 643

Query: 1442 VTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTF 1621
              +Y +LRVFG   Y H+ + KLE RA + +F+G   GVKGY++WC +  K + SRDV F
Sbjct: 644  A-NYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVF 702

Query: 1622 DEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAI-IPAKNDNPVTEDLSDDDEEEVQTQ 1798
             E  +LK   S + D+ LQ      K+   E   + +    D    ++ + DDE      
Sbjct: 703  HESVLLKE--SAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAES 760

Query: 1799 KPLDQSE---------PIAVRRPRREIHKPARF--ADMVAYALPVIDD---DVPFTFREA 1936
            +  + SE          +A  R RRE+  P R+  AD++AYAL   D+   + P  F EA
Sbjct: 761  EEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEA 820

Query: 1937 VRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKA 2116
            + S   +KW  AM++EM+SLQ+N+TW +   P  K+ I CKW+F + +G P+    +YKA
Sbjct: 821  MESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKA 880

Query: 2117 RLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEI 2296
            RLVA+G+ Q+EG+D+NE+FSPVVKHSSIRI               DVKTAFLHG+LEE+I
Sbjct: 881  RLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQI 940

Query: 2297 YMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRK 2476
             M QPEGF+   KE++VC L KSLYGLKQSPRQWY+RFD FM+ + Y RS+YD CVY   
Sbjct: 941  LMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGG 1000

Query: 2477 LQDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSG 2656
                   YLLLYVDDMLIAS+ + EI++LK  L  EFEMKDLG AK+ILGM+I RDR++G
Sbjct: 1001 SDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAG 1060

Query: 2657 KLCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAV 2836
             L L+Q +Y+KKVL+RF M ++ K V TPL P  KLSA  +    E+   M++ PYA AV
Sbjct: 1061 TLFLSQGKYIKKVLERFEM-QDCKPVQTPLGPQFKLSAATT---SEDESQMNEFPYAQAV 1116

Query: 2837 GSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLG 3016
            GSLMYAMVCTR DI+ AVSVVSRY+  PGK HW+AVKWI+RY+  +   GL++ +     
Sbjct: 1117 GSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDK 1176

Query: 3017 QGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVK 3196
              ++G+ DSD+AGDLD+R+ST+ Y+F L    +SWKS+LQS  ALS+TEAE++A +EAVK
Sbjct: 1177 IEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVK 1236

Query: 3197 EAIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNI 3376
            EA+WL+ LL +L + QK + V CD+Q+AIHL KNQ+ H RTKHIDV+  F+R+ + +G +
Sbjct: 1237 EAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTV 1296

Query: 3377 LLEKIHTTENPADMLTKVVTSVKFKHCLYLINIL 3478
            ++ KIHT+ NPAD LTK + + KF+ C+ L+ I+
Sbjct: 1297 VVSKIHTSVNPADALTKSLPTAKFEFCVNLMGIM 1330


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 1023 bits (2644), Expect = 0.0
 Identities = 551/1099 (50%), Positives = 730/1099 (66%), Gaps = 21/1099 (1%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEG----ESEDEFSLVVSPLISR------S 373
            +C  C ++GH KKDC   K  G+   +A  ++G     S+D   L     +S       +
Sbjct: 229  KCYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAVSTKGKNRLT 288

Query: 374  DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLT 553
            D WI+DSG T+HM+P ++WF  +E ++ G V+MGND+A +  GIG++++K +DG+ R L 
Sbjct: 289  DVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQ 348

Query: 554  DVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNT-V 727
            +VR+V  L KNL+S+G L+  G    ++ G+LK   GSLVV+K  +   NLY   G+T  
Sbjct: 349  EVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQ 408

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
            +  A+VA    E   E   +WH RLGH  E+ L+ LA++ L+  +K   L FCEHCV+ K
Sbjct: 409  MADASVAVGSQE---ETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF  +   ++ ILD +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K  
Sbjct: 466  QHRLKFAKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSG 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F ++K ++E +TG++IK LRTDNGGEYT   F   C + GI R FTV  TPQQNGV
Sbjct: 525  VYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL+E+ R ML  AGL +  WAEA   A ++INR PS+AIG KTP+E+W GKP  
Sbjct: 585  AERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKP-G 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY SLRVFG  VY  Y+ +E +KL+P+++R  F+G    VKGYRLW   ++KI  SRDV 
Sbjct: 644  DYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVI 703

Query: 1619 FDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQ 1798
            F E+ + K    +K D   ++       VE+EE +           E+   + E E Q  
Sbjct: 704  FVENELQK---EQKNDGTTKETAT----VEIEEKS---------GEENSEAEPEHEEQEP 747

Query: 1799 KPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKW 1963
              ++ +EP   RR  R+I KP+  ++ V     AY L + +D  P TF EAV   ++  W
Sbjct: 748  NEVNDAEP---RRTTRQIRKPSWHSEYVMASHDAYCL-LSEDGEPSTFHEAVNGSDASLW 803

Query: 1964 KGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYA 2140
              AM+EE+++L +N TW++ +LPKG+KAIG KWVF  K+DG  N    RY+ARLV KGYA
Sbjct: 804  MAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDG--NDQVERYRARLVVKGYA 861

Query: 2141 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2320
            QKEGID+NE+FSPVV+ ++IRI               DVKTAFLHG+LEEEIYM QPEGF
Sbjct: 862  QKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGF 921

Query: 2321 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIY 2500
            +   +EN VC+L KSLYGLKQ+PR WYKRFD F+M   Y R   DHC Y ++  D  FI 
Sbjct: 922  EEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFII 981

Query: 2501 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2680
            LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK 
Sbjct: 982  LLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKN 1041

Query: 2681 YLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 2860
            YL+KVL+RF M ++   +STPL  + KLS+ + P ++ ER  M +VPYA+AVGSLMYAM+
Sbjct: 1042 YLQKVLRRFNM-QDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMI 1100

Query: 2861 CTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3040
            CTRPDI+QAV  VSR+M DPGK HW+AVK ILRYI  T    L F   G     I GY D
Sbjct: 1101 CTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCF---GGSEFTIRGYVD 1157

Query: 3041 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3220
            SD+AGDLDKR+STTGY+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW Q L
Sbjct: 1158 SDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRL 1217

Query: 3221 LEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTT 3400
            LE+LG  Q+ I V+CDS SA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT 
Sbjct: 1218 LEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTK 1277

Query: 3401 ENPADMLTKVVTSVKFKHC 3457
            +N AD++TK + S KF  C
Sbjct: 1278 DNLADVMTKPINSDKFIWC 1296


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 545/1037 (52%), Positives = 704/1037 (67%), Gaps = 13/1037 (1%)
 Frame = +2

Query: 227  CAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGESEDEF-SLVVSPLISRSDEWILDSGCT 403
            C +C   GH   +C KL++K K      + +G+ E+E  + VV+   S ++  +  +GC 
Sbjct: 236  CKYCKRDGHDISECWKLQDKDKRT-GKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCA 294

Query: 404  YHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKK 583
               +  ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R L+DV+++PNLK+
Sbjct: 295  --QTSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKR 352

Query: 584  NLISLGALESKGLIVTLRDGVLKATSGSLVVIK-GIRRNNLYYYQGNTVIGT-AAVADSR 757
            +LISL              G+LK T GSLVV+K  I+  NLY+ +G T++G  AAV DS 
Sbjct: 353  SLISLY-------------GILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSL 399

Query: 758  NEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAI 937
            +   S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ 
Sbjct: 400  SN--SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTST 457

Query: 938  HNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKT 1117
            H TEGILDYVHSD+WGP+   S GG  Y +T +DD+SR+VW Y +K K +    F +WKT
Sbjct: 458  HTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKT 517

Query: 1118 RIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVE 1297
             +E QT RK+K+LRTDNG E+ S  F+  C   GIV H+T   TPQQN VAERMNRT++ 
Sbjct: 518  MVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIIS 577

Query: 1298 KVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGS 1477
            K RCMLSNAGL +Q WAEAV+ A +LINR P  AI  KTP+EVWSG P T+Y  LRVFG 
Sbjct: 578  KARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSP-TNYSDLRVFGC 636

Query: 1478 LVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSE 1657
              Y HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  +L    S 
Sbjct: 637  TAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPS- 695

Query: 1658 KTDSALQQVERTPKQVE-VEEMAIIPAKNDNPVTED--LSDDDEEEVQTQKPLDQSEPIA 1828
             T+  ++  E+   QVE +      P K D  + +D  + +D +  +  Q P      IA
Sbjct: 696  -TNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSP---KRSIA 751

Query: 1829 VRRPRREIHKPARF---ADMVAYALPVID----DDVPFTFREAVRSPESEKWKGAMEEEM 1987
              +P+R I  P R+   A +VAYAL V +    +  P T+ EA+ S +  +W  AM +EM
Sbjct: 752  KDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEM 811

Query: 1988 QSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNE 2167
            +SL+KN TW++ +LPK KK I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID+N+
Sbjct: 812  ESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFND 871

Query: 2168 VFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWV 2347
            VFSPVVKHSSIR                +VKTAFLHG+LEE+IYM QPEGF V GKEN V
Sbjct: 872  VFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLV 931

Query: 2348 CKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDML 2527
            C+L KSLYGLKQSPRQWYKRFD FM+ QK+  S YD CVYL K+ D S IYLLLYVDDML
Sbjct: 932  CRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYL-KVVDGSVIYLLLYVDDML 990

Query: 2528 IASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRF 2707
            IA++ + EI+KLKAQL+ EFEMKDLG AKKILGMEI+R+R SGKL L+QK Y++KVL+RF
Sbjct: 991  IAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRF 1050

Query: 2708 GMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQA 2887
             M  + K VSTPLA H +LS+ L P +D + +YM +VPY++AVGSLMYAMVC RPD+S A
Sbjct: 1051 NM-HDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHA 1109

Query: 2888 VSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDK 3067
            +SVV+RYM +PGK HW AV+WI RY+  T    L FE+      G+VGY DSD+AGDLD+
Sbjct: 1110 LSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERS---RDGLVGYVDSDFAGDLDR 1166

Query: 3068 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 3247
            RRS TGY+FT+    VSWK++LQ+TVALSTTEAEYMA+ EA KEAIWL+ L  +L     
Sbjct: 1167 RRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACKEAIWLRGLYTELCGVTS 1226

Query: 3248 HIIVHCDSQSAIHLAKN 3298
             I + CDSQSAI+L K+
Sbjct: 1227 CINIFCDSQSAIYLTKD 1243


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 550/1096 (50%), Positives = 730/1096 (66%), Gaps = 21/1096 (1%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDC--PKLKNKGKAPQDA----CVAEGESEDEFSLVVSPLISR----- 370
            +C  C +KGH KK+C   + + +GK P+ +    CVA    + E     + ++S      
Sbjct: 229  KCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRKRL 288

Query: 371  SDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 550
            SD W++DSG T+HM+  +EWF  +E I+GG VYMGND+A +  GIG+I++K  DG+ R +
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRR-NNLYYYQGNTV 727
             +VR+V  LKKNL+SLG ++S G    + +G++K   G+LV++K  +   NL+  +G T+
Sbjct: 349  EEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETL 408

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
                A   S  E   E+  +WH++LGH  E+ L+ L+++ L   +K   L FCEHCV  K
Sbjct: 409  QEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF  +I  ++ ILD +HSDVW  S   S+GG  Y VTFIDD+SRR WVY +K K +
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSD 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F ++K  +E ++G+KIK LRTDNGGEYT   F   C + GI R FTV  TPQQNGV
Sbjct: 525  VFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL E++R ML  AGL    WAEA   A +++NR PS+AIG KT +E+W+GKP  
Sbjct: 585  AERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPA- 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY  L  FG  VY  Y+ +E +KL+P++++ +F+G   GVKGYRLW   + KI+ SRDV 
Sbjct: 644  DYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLWDPTAHKIVISRDVI 703

Query: 1619 FDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQ 1798
            F E  + +    + T    ++ E  P  VE           +NP   D S+   E  + Q
Sbjct: 704  FVEDQLQRKDGDDGT--VKEKSETVPVYVE-----------NNPENSDSSEAAPEH-EEQ 749

Query: 1799 KPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKW 1963
            +P++   P  VRR  RE   P   ++ V     AY L + +D  P TF EA+ S +   W
Sbjct: 750  EPVESEAP-EVRRSTRERRPPTWHSEYVTEINVAYCL-LTEDGEPSTFHEALNSLDVALW 807

Query: 1964 KGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYA 2140
              AM+EE+++L KNKTW++  LP G+KAIG KWV+  K+DG  N    RY+ARLV KGYA
Sbjct: 808  MTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYA 865

Query: 2141 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2320
            QKEGID+NE+FSPVV+ +++RI               DVKTAFLHG+LEEEIYM QPEGF
Sbjct: 866  QKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGF 925

Query: 2321 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIY 2500
               GKEN VC+L KSLYGLKQ+PR WYKRFD F+M   Y R   DHC Y ++ +D  FI 
Sbjct: 926  AETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFII 985

Query: 2501 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2680
            LLLYVDDML+A  ++  I +LKAQL +EFEMKDLG A KILGM+I RDR + K+ L+QK 
Sbjct: 986  LLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKN 1045

Query: 2681 YLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 2860
            YLKK+L+RF M ++ K +STPL  + KLS+ + P N+ ER  M +VPYA+AVGSLM+AM+
Sbjct: 1046 YLKKILRRFNM-QDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMI 1104

Query: 2861 CTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3040
            CTRPDI+QAV  VSRYM +PG  HW AVK ILRYI  T +V L +   G     + GY D
Sbjct: 1105 CTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCY---GGSEFTVRGYVD 1161

Query: 3041 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3220
            SD+AGDLDKR+STTGY+FTLA A VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L
Sbjct: 1162 SDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRL 1221

Query: 3221 LEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTT 3400
            LE+LG  Q+ I V CDSQSA+H+A+N   H+RTKHI V+YHFVRE++E+G++ L+KIHT 
Sbjct: 1222 LEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTK 1281

Query: 3401 ENPADMLTKVVTSVKF 3448
            EN AD+LTK + + KF
Sbjct: 1282 ENLADVLTKSINTDKF 1297


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 550/1096 (50%), Positives = 731/1096 (66%), Gaps = 21/1096 (1%)
 Frame = +2

Query: 224  ECAFCHEKGHWKKDC--PKLKNKGKAPQDA----CVAEGESEDEFSLVVSPLISR----- 370
            +C  C +KGH KK+C   + + +GK P+ +    CVA    + E     +  +S      
Sbjct: 229  KCYNCGKKGHVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEILYSEATTVSEGRKRL 288

Query: 371  SDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 550
            SD W++DSG T+HM+  +EWF  +E I+GG VYMGND+A +  GIG+I++K  DG+ R +
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 551  TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRRN-NLYYYQGNTV 727
             +VR+V  LKKNL+SLG ++S G    + +G++K   G+LV++K  +   NL+  +G T+
Sbjct: 349  GEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETL 408

Query: 728  IGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGK 907
                A   S  E   E+  +WH++LGH  E+ L+ L+++ LL  +K   L FCEHCV  K
Sbjct: 409  QEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSK 465

Query: 908  QKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDE 1087
            Q R+KF  +I  ++ ILD +HSDVW  S   S+GG  Y VTFIDD+SRR WVY +K K +
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSD 524

Query: 1088 VLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGV 1267
            V  +F ++K  +E ++G+KIK LRTDNGGEYT   F   C + GI R FTV  TPQQNGV
Sbjct: 525  VFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGV 584

Query: 1268 AERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVT 1447
            AERMNRTL E++R ML  AGL    WAEA   A +++NR PS+AIG KT +E+W+GKP  
Sbjct: 585  AERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPA- 643

Query: 1448 DYDSLRVFGSLVY--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVT 1618
            DY  L  FG  +Y  Y+ +E +KL+ +++R +F+G   GVKGYRLW   + KI+ SRDV 
Sbjct: 644  DYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLWDPTAHKIVISRDVI 703

Query: 1619 FDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQ 1798
            F E  + +    + T    ++ E  P  VE           +NP   D S+   E  + Q
Sbjct: 704  FVEDQLQRKDGDDGT--VKEKSETVPVYVE-----------NNPENSDSSEAAPEH-EEQ 749

Query: 1799 KPLDQSEPIAVRRPRREIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKW 1963
            +P++   P  VRR  RE   P   ++ V     AY L + +D  P TF EA+ S +   W
Sbjct: 750  EPVESEAP-EVRRSTRERRPPTWHSEYVTEINVAYCL-LTEDGEPSTFHEALNSSDVALW 807

Query: 1964 KGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYA 2140
              AM+EE+++L KNKTW++  LP+G+KAIG KWV+  K+DG  N    RY+ARLV KGYA
Sbjct: 808  MTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYA 865

Query: 2141 QKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGF 2320
            QKEGID+NE+FSPVV+ +++RI               DVKTAFLHG+LEEEIYM QPEGF
Sbjct: 866  QKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGF 925

Query: 2321 KVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIY 2500
               GKEN VC+L KSLYGLKQ+PR WYKRFD F+M   Y R   DHC Y ++ +D  FI 
Sbjct: 926  AETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFII 985

Query: 2501 LLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQ 2680
            LLLYVDDML+A  ++  I +LKAQL +EFEMKDLG A KILGM+I RDR + K+ L+QK 
Sbjct: 986  LLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKN 1045

Query: 2681 YLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMV 2860
            YLKK+L+RF M ++ K +ST L  + KLS+ + P N+ ER  M +VPYA+AVGSLM+AM+
Sbjct: 1046 YLKKILRRFNM-QDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMI 1104

Query: 2861 CTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCD 3040
            CTRPDI+QAV VVSRYM +PG  HW AVK ILRYI  T DV L +   G     + GY D
Sbjct: 1105 CTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCY---GGSEFTVRGYVD 1161

Query: 3041 SDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSL 3220
            SD+AGDLDKR+STTGY+FTLA A VSW S LQ+ VALSTTEAEYMA ++A K+AIW+Q L
Sbjct: 1162 SDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRL 1221

Query: 3221 LEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTT 3400
            LE+LG  Q+ I+V CDSQSA+H+A+N   H+RTKHI V+YHFVRE++E+G++ L+KIHT 
Sbjct: 1222 LEELGHKQQKILVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTK 1281

Query: 3401 ENPADMLTKVVTSVKF 3448
            EN AD+LTK + + KF
Sbjct: 1282 ENLADVLTKPINTDKF 1297


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score = 1006 bits (2600), Expect = 0.0
 Identities = 542/1115 (48%), Positives = 700/1115 (62%), Gaps = 32/1115 (2%)
 Frame = +2

Query: 227  CAFCHEKGHWKKDCPKLKNKGKAPQ-----DACVAEGESEDEFSLVVSPLIS-----RSD 376
            C  C ++GH+KK C   K + K        +A        D  +LVVS  +        D
Sbjct: 251  CWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRALLGFAEVTPD 310

Query: 377  EWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTD 556
             WILD+GC++HM+  K+W  +F+E   G V MGND   +  GIG +R+KN DGST +LTD
Sbjct: 311  TWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTD 370

Query: 557  VRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGT 736
            VRY+P + KNLISLG LE KG     + G+L      L V+ G + + LY+ QG T+ G 
Sbjct: 371  VRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFLQGTTLAGE 430

Query: 737  AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKR 916
            A V D    KE +   LWH RLGH G K LQ L  +G L                 K   
Sbjct: 431  ANVID----KEKDETSLWHSRLGHIGAKGLQVLVSKGHLD----------------KNIM 470

Query: 917  VKFGTAIHNTEGILDYVHSDVWGPSKTP-SLGGKHYFVTFIDDFSRRVWVYTMKTKDEVL 1093
            + FG A H T+  LDYVHSD+WG +  P S+G   YF+TFIDDF+RR W+Y ++TKDE  
Sbjct: 471  ISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAF 530

Query: 1094 GIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAE 1273
              F++WKT+IENQ  +K+K+L TDNG E+ +  F   C K G++RH T   TPQQNGVAE
Sbjct: 531  SKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAE 590

Query: 1274 RMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDY 1453
            RMNRT++ KVRCMLS +GLG+Q WAEA + A  LIN+ PSS+I    P E W+G P  DY
Sbjct: 591  RMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHP-PDY 649

Query: 1454 DSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHA 1633
              L+ FGS+ Y H  + KL PRAK+ +F+G   GVK +++W LE +K + SRD+ F E+ 
Sbjct: 650  KILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRDIVFQENQ 709

Query: 1634 MLKTVTSE---KTDSALQQVERTPKQVEVEEMAIIPAKN----DNPVTEDLS-------D 1771
            M K +      + D  L +VERT   +E++ ++          DN   E  S       D
Sbjct: 710  MYKELQKNDMSEEDKQLTEVERT--LIELKNLSADDENQSEGGDNSNQEQASTTRSASKD 767

Query: 1772 DDEEEVQTQKPLDQSEPIAVRRPRREIHKPARFAD----MVAYALPVIDDDV---PFTFR 1930
               EE  +     ++  +A  R RR+I  P RF +    +V +AL + +D     P T+ 
Sbjct: 768  KQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYE 827

Query: 1931 EAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRY 2110
            EA+RSPE EKWK A  EEM S++KN TW V   P+GK+ IGCKW+F +K G P     RY
Sbjct: 828  EAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRY 887

Query: 2111 KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEE 2290
            KARLVAKG++Q+EGIDY E+FSPVVKH SIR                DVKTAFLHG+L+E
Sbjct: 888  KARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDE 947

Query: 2291 EIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYL 2470
             I M+QPEG++       VC L KSLYGLKQSPRQW +RFD FM+   Y RSKY+ CVY 
Sbjct: 948  YILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYT 1007

Query: 2471 RKLQDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRT 2650
            ++L D S+IYLLLYVDDMLIASQ++ +I KLK  LN+EFEMKDLG A+KILGMEI+R+R 
Sbjct: 1008 QQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNRE 1067

Query: 2651 SGKLCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYAN 2830
             G L L+Q +Y+  VL+ FGM + +K   TPL  H KL A        + +YM  VPY N
Sbjct: 1068 QGILDLSQSEYVAGVLRAFGM-DQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPN 1126

Query: 2831 AVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGK 3010
            A+GS+MY+M+ +RPD++  V VVSR+M  P K HW AVKW++RY+  T D  L F++D K
Sbjct: 1127 AIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKDDK 1186

Query: 3011 LGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEA 3190
                I GYCDSDYA DLD+RRS TG++FT     +SWKS LQ  VALSTTEAEYMA++EA
Sbjct: 1187 F--EIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEA 1244

Query: 3191 VKEAIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEG 3370
            VKEAIWL+ L  ++G  Q  + V CDSQSAI L+KN V H RTKHIDVRYHF+RE + +G
Sbjct: 1245 VKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADG 1304

Query: 3371 NILLEKIHTTENPADMLTKVVTSVKFKHCLYLINI 3475
             I + KI TT NPAD+ TK V   K +  L L+ +
Sbjct: 1305 EIQVVKISTTWNPADIFTKTVPVSKLQEALKLLRV 1339