BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00007569
         (336 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...    91   2e-16
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    87   2e-15
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...    84   1e-14
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...    83   3e-14
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     83   4e-14
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]         82   6e-14
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]    81   1e-13
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         81   2e-13
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...    80   3e-13
emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]    80   3e-13
emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]    79   5e-13
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...    79   6e-13
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    79   8e-13
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    79   8e-13
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...    78   1e-12
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    78   1e-12
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    77   3e-12
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...    75   9e-12
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    74   2e-11
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    74   2e-11

>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 46/104 (44%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
 Frame = +3

Query: 24  ENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESI 200
           EN++ +EM++++V  ++NE + L +Y LARD  RR NIR P+RF+D   ++Y  +  E +
Sbjct: 671 ENLEESEMNEEVVG-SENE-QSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDL 728

Query: 201 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
           +  EPK+Y++ALKS   ++W NAM EEM+S   ++TW L+ KPE
Sbjct: 729 EEEEPKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPE 772


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
 Frame = +3

Query: 51   DDLVDLNDNEPEE-LGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQ 227
            +++V    NEP + L +Y L RDR +R ++ P R+   +M ++  SV E I + EPKTYQ
Sbjct: 716  EEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQ 775

Query: 228  DALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
            +A+ S  + +W+ A+ EEM+SL  N TW LV KP++
Sbjct: 776  EAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKD 811


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
 Frame = +3

Query: 9   IANMPENVDNAEMHDDLVDLNDNEPEE---LGNYQLARDRTRRNIRQPTRFDDFQMISYV 179
           I    E+ +N E   + V+  D   E    L NYQLA+DR RR I  P RF +   +++ 
Sbjct: 446 IEECEESDENDEQEPETVNETDPTVESEGSLANYQLAKDRVRRQINPPARFTEESGVAFA 505

Query: 180 FSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
             V ES+   EP++YQ+A + +   +W NA HEEM+SL  N TW LV KP N
Sbjct: 506 LVVVESLSLEEPESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTN 557


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 43/104 (41%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
 Frame = +3

Query: 24  ENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESI 200
           EN++ +E +++ VD ++NE + L +Y LAR+R RR NIR P+RF D   ++Y  +  E +
Sbjct: 143 ENLEESETNEE-VDGSENE-QSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDL 200

Query: 201 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
           +  EPK+Y++A+K    ++W +AM EEM+S   ++TW L+ KPE
Sbjct: 201 EIEEPKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPE 244


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +3

Query: 24   ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 200
            E+V+  +  +  V+L + +    L NYQLARDR RR I  P RF +   +++     E++
Sbjct: 782  ESVEEEQEPETQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETL 841

Query: 201  DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
               EP++YQ+A   +  ++W  A HEEM+SL  N TW+LV KP+N
Sbjct: 842  SMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQN 886


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = +3

Query: 24  ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 200
           E+VD  +  +  V+L + +    L NYQLARDR RR I  P RF +   +++     E++
Sbjct: 7   ESVDEEQEPEPQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETL 66

Query: 201 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
              EP++YQ+A  ++  ++W  A HEEM+SL  N TW+LV KP++
Sbjct: 67  SMEEPQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKD 111


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 42/102 (41%), Positives = 55/102 (53%)
 Frame = +3

Query: 27  NVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDN 206
           N +N E+ D            L NYQL RD  RR+IR P RF    M++Y  S+ E +  
Sbjct: 396 NKENGEVKDKFETKPQQYDIPLENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSC 455

Query: 207 CEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
            EPK Y +A+  + S +W+ AM EE  SL  N TW LV KP+
Sbjct: 456 AEPKNYLEAISCKDSPKWMTAMQEEFESLLKNGTWQLVDKPK 497


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 36/83 (43%), Positives = 50/83 (60%)
 Frame = +3

Query: 87   ELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLN 266
            +L NYQLARDR RR +R P R+    +I+Y     + +   EP  + +A++S H  +WL 
Sbjct: 772  DLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLE 831

Query: 267  AMHEEMNSLHVNNTWILVPKPEN 335
            AM +EM SL  N TW L+P P N
Sbjct: 832  AMQDEMESLQRNQTWTLIPNPGN 854


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
           (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
           unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = +3

Query: 24  ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 200
           E+VD  +  +  V+L + +    L NYQL RDR RR I  P RF +   +++     E++
Sbjct: 682 ESVDEEQEPEPQVELPETQTTSSLANYQLVRDRERRQIHPPARFTEESGVAFALVTVETL 741

Query: 201 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
              EP++YQ+A   +  ++W  A HEE NSL  N TW+LV KP++
Sbjct: 742 SMEEPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKD 786


>emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]
          Length = 259

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 39/91 (42%), Positives = 57/91 (62%)
 Frame = +3

Query: 63  DLNDNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKS 242
           D N+N P+E   Y LARDR  R I+ P R+     ++Y FSV ++I+  EP+TY + + +
Sbjct: 143 DDNENTPQEQ-QYCLARDRIMRQIKPPQRYSYVDSVAYAFSVAKNIEKEEPQTYHETITN 201

Query: 243 EHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
             S +W+  M+EE+ SL  N TW LV KP+N
Sbjct: 202 RESTQWIITMNEEIESLQKNLTWQLVEKPKN 232


>emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]
          Length = 992

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 35/88 (39%), Positives = 56/88 (63%)
 Frame = +3

Query: 72   DNEPEELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHS 251
            D   + L +Y LARDR +R ++ P R+   +M ++  SV E I + EPKT Q+A+ S+ +
Sbjct: 892  DEPTQGLESYSLARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEA 951

Query: 252  QEWLNAMHEEMNSLHVNNTWILVPKPEN 335
             +W+  + E+M+SL  N TW LV KP++
Sbjct: 952  NQWVKVIQEKMDSLRKNETWELVTKPKD 979


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
 Frame = +3

Query: 24   ENVDNAEMHDDLVDLNDNEPEELG--NYQLARDRTRRNIRQPTRFDDFQMISYVFSVFES 197
            E   ++E   +  +     P+  G   Y+LARDR RRNI  PTRF +   +++   V E+
Sbjct: 774  EQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVEN 833

Query: 198  IDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
                EP++YQ+A++S+  ++W  A H+EM+SL  N TW LV KP++
Sbjct: 834  CIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKD 879


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
 Frame = +3

Query: 3    PEIANMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYV 179
            PE  N+  N+D   + D    +    P+    + +A+D+ +RNI+ P R+ ++  +++Y 
Sbjct: 709  PEKENVAINLDAPVIEDSDSSIVQQSPK----HSIAKDKPKRNIKPPRRYIEEANIVAYA 764

Query: 180  FSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
             SV E I+ N EP TY DA+ S+    W+ AMH+EM SL  N+TW LV  P+
Sbjct: 765  LSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 816


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
 Frame = +3

Query: 3    PEIANMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYV 179
            PE  N+  N+D   + D    +    P+    + +A+D+ +RNI+ P R+ ++  +++Y 
Sbjct: 746  PEKENVAINLDAPVIEDSDSSIVQQSPK----HSIAKDKPKRNIKPPRRYIEEANIVAYA 801

Query: 180  FSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
             SV E I+ N EP TY DA+ S+    W+ AMH+EM SL  N+TW LV  P+
Sbjct: 802  LSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 853


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
 Frame = +3

Query: 51   DDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF--DDFQMISYVFSVFESIDNCEPKTY 224
            D  V+  D++ + L NY LARDR RR IR P RF  +D  ++ +  ++ E  +  EP+TY
Sbjct: 767  DKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETY 826

Query: 225  QDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
            ++A++S   ++W  A  EEM+S+  N+TW ++ KPE
Sbjct: 827  EEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPE 862


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
 Frame = +3

Query: 21   PENVDNAEMHDDLV--DLNDNEPEELGNYQLARDRTRRNIRQPTRF-DDFQMISYVFSVF 191
            PE  D A   D+ V  D N +  ++     +A+DR +RNI+ P R+ ++  +++Y  SV 
Sbjct: 955  PEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVA 1014

Query: 192  ESID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
            E I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW LV  P+
Sbjct: 1015 EEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 1062


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
 Frame = +3

Query: 21   PENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFES 197
            PE  D     +   D+ ++ P ++ +  +A+DR RR  +R PTR+    M+ Y   V E 
Sbjct: 729  PEEEDQEPQTE--TDIPESMPSDI-HQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEE 785

Query: 198  IDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKP 329
            +D  EP TY++A+ S  S++W  AM +EM SLH N TW LV +P
Sbjct: 786  VDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQP 829


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
 Frame = +3

Query: 24  ENVDNAEMHDDLVDLNDNEP-EELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESI 200
           E V+  +  +  V+L   +    L  YQLA+DR RR I  P RF +   +++     E++
Sbjct: 6   ETVEEEQEPEPQVELPKTQTTSSLAYYQLAKDRERREIHPPARFTEESGVAFALVTVETL 65

Query: 201 DNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPEN 335
              EP++YQ+A   +  ++W  A HEEM+SL  N TW+LV KP++
Sbjct: 66  SMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQD 110


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
 Frame = +3

Query: 12   ANMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDF------QMIS 173
            A M   VD+      ++D ND++        +A  R RR IR+P R+ D         ++
Sbjct: 848  APMENGVDDTSEEQPVIDQNDSQ-------SIAAHRPRREIRRPMRYVDCVSANITNPVA 900

Query: 174  YVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
            +  +V E I   EP++Y++A++S+ S++WL++M +EM SL  N TW LVP PE
Sbjct: 901  FALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPE 953


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
 Frame = +3

Query: 12   ANMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRFDDF------QMIS 173
            A M   VD+      ++D ND++        +A  R RR IR+P R+ D         ++
Sbjct: 1061 APMENGVDDTSEEQPVIDQNDSQ-------SIAAXRPRREIRRPMRYVDCVSANITNPVA 1113

Query: 174  YVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPE 332
            +  +V E I   EP++Y++A++S+ S++WL++M +EM SL  N TW LVP PE
Sbjct: 1114 FALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPE 1166