BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00007324
         (1180 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      312   2e-82
gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      312   2e-82
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      312   2e-82
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      311   3e-82
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      310   6e-82
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   310   7e-82
ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212...   310   1e-81
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      309   2e-81
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera...   306   1e-80
emb|CAN64335.1| hypothetical protein VITISV_001808 [Vitis vinifera]   299   1e-78
emb|CAN63777.1| hypothetical protein VITISV_043745 [Vitis vinifera]   295   3e-77
gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]             293   7e-77
gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]                293   9e-77
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                293   9e-77
gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subc...   292   2e-76
gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    291   3e-76
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  291   5e-76
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         289   2e-75
gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]     289   2e-75
gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Ze...   289   2e-75

>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  312 bits (799), Expect = 2e-82
 Identities = 158/279 (56%), Positives = 199/279 (71%)
 Frame = +1

Query: 343  INSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPDVRWLRDHPPELVIGD 522
            + +  D +A++ K  EN + SD      S T    +N  +  +P +R  + HP EL+IGD
Sbjct: 991  VRTSGDNVADTAKSAENAENSD------SATDEPNINQPDK-RPSIRIQKMHPKELIIGD 1043

Query: 523  IREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQR 702
               GV TRSR  +    +CF+S+IEPK+V +AL D  WI AMQEEL QF+RN+VWELV R
Sbjct: 1044 PNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPR 1103

Query: 703  PIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFL 882
            P   NVIGTKW+F+NK NEEG + RNKARLVA+GY Q EG+DFDETFAPVARLE+IR+ L
Sbjct: 1104 PEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLL 1163

Query: 883  AYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPR 1062
              A    F +YQMDVKSAFLNG L EE YVEQP GF   T  D VY+LKKALYGLKQAPR
Sbjct: 1164 GVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPR 1223

Query: 1063 AWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            AWY+ L++FLT+ G+ KG +D+TLF  QD +++++ QIY
Sbjct: 1224 AWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1262



 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 28/81 (34%), Positives = 51/81 (62%)
 Frame = +1

Query: 22  LWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTR 201
           +WH++  HL+ + + K+     V G+P+   ++  +C  CQ GKQ+K S ++    +++R
Sbjct: 692 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSR 751

Query: 202 ILHLLHMDLFGPVEPASINGE 264
           +L LLHMDL GP++  S+ G+
Sbjct: 752 VLELLHMDLMGPMQVESLGGK 772


>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  312 bits (799), Expect = 2e-82
 Identities = 161/283 (56%), Positives = 200/283 (70%), Gaps = 4/283 (1%)
 Frame = +1

Query: 343  INSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPD----VRWLRDHPPEL 510
            + +  D +A++ K  EN + SD    D+SN          + QPD     R  + HP EL
Sbjct: 988  VRTSGDNVADAAKSGENAENSD-SATDESN----------INQPDKRSSTRIQKMHPKEL 1036

Query: 511  VIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWE 690
            +IGD   GV TRSR  +    +CF+S+IEPK+V +AL D  WI AMQEEL QF+RN+VWE
Sbjct: 1037 IIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWE 1096

Query: 691  LVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAI 870
            LV RP   NVIGTKW+F+NK NEEG + RNKARLVA+GY Q EG+DFDETFAPVARLE+I
Sbjct: 1097 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1156

Query: 871  RMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLK 1050
            R+ L  A    F +YQMDVKSAFLNG L EEVYVEQP GF   T  D VY+LKKALYGLK
Sbjct: 1157 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLK 1216

Query: 1051 QAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            QAPRAWY+ L++FLT+ G+ KG +D+TLF  QD +++++ QIY
Sbjct: 1217 QAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1259



 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 28/81 (34%), Positives = 51/81 (62%)
 Frame = +1

Query: 22  LWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTR 201
           +WH++  HL+ + + K+     V G+P+   ++  +C  CQ GKQ+K S ++    +++R
Sbjct: 689 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSR 748

Query: 202 ILHLLHMDLFGPVEPASINGE 264
           +L LLHMDL GP++  S+ G+
Sbjct: 749 VLELLHMDLMGPMQVESLGGK 769


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  312 bits (799), Expect = 2e-82
 Identities = 161/283 (56%), Positives = 200/283 (70%), Gaps = 4/283 (1%)
 Frame = +1

Query: 343  INSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPD----VRWLRDHPPEL 510
            + +  D +A++ K  EN + SD    D+SN          + QPD     R  + HP EL
Sbjct: 990  VRTSGDNVADAAKSGENAENSD-SATDESN----------INQPDKRSSTRIQKMHPKEL 1038

Query: 511  VIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWE 690
            +IGD   GV TRSR  +    +CF+S+IEPK+V +AL D  WI AMQEEL QF+RN+VWE
Sbjct: 1039 IIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWE 1098

Query: 691  LVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAI 870
            LV RP   NVIGTKW+F+NK NEEG + RNKARLVA+GY Q EG+DFDETFAPVARLE+I
Sbjct: 1099 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 1158

Query: 871  RMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLK 1050
            R+ L  A    F +YQMDVKSAFLNG L EEVYVEQP GF   T  D VY+LKKALYGLK
Sbjct: 1159 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLK 1218

Query: 1051 QAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            QAPRAWY+ L++FLT+ G+ KG +D+TLF  QD +++++ QIY
Sbjct: 1219 QAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1261



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 28/81 (34%), Positives = 52/81 (64%)
 Frame = +1

Query: 22  LWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTR 201
           +WH++  HL+ + + K+   + V G+P+   ++  +C  CQ GKQ+K S ++    +++R
Sbjct: 691 IWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSR 750

Query: 202 ILHLLHMDLFGPVEPASINGE 264
           +L LLHMDL GP++  S+ G+
Sbjct: 751 VLELLHMDLMGPMQVESLGGK 771


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  311 bits (797), Expect = 3e-82
 Identities = 161/278 (57%), Positives = 198/278 (71%), Gaps = 4/278 (1%)
 Frame = +1

Query: 358  DEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPD----VRWLRDHPPELVIGDI 525
            D +A++ K  EN + SD    D+SN          + QPD     R  + HP EL+IGD 
Sbjct: 995  DNVADAAKSGENAENSD-SATDESN----------INQPDKRSSTRIQKMHPKELIIGDP 1043

Query: 526  REGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRP 705
              GV TRSR  +    +CF+S+IEPK+V +AL D  WI AMQEEL QF+RN+VWELV RP
Sbjct: 1044 NRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRP 1103

Query: 706  IHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLA 885
               NVIGTKW+F+NK NEEG + RNKARLVA+GY Q EG+DFDETFAPVARLE+IR+ L 
Sbjct: 1104 EGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLG 1163

Query: 886  YAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRA 1065
             A    F +YQMDVKSAFLNG L EEVYVEQP GF   T  D VY+LKKALYGLKQAPRA
Sbjct: 1164 VACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRA 1223

Query: 1066 WYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            WY+ L++FLT+ G+ KG +D+TLF  QD +++++ QIY
Sbjct: 1224 WYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1261



 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 28/81 (34%), Positives = 51/81 (62%)
 Frame = +1

Query: 22  LWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTR 201
           +WH++  HL+ + + K+     V G+P+   ++  +C  CQ GKQ+K S ++    +++R
Sbjct: 691 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSR 750

Query: 202 ILHLLHMDLFGPVEPASINGE 264
           +L LLHMDL GP++  S+ G+
Sbjct: 751 VLELLHMDLMGPMQVESLGGK 771


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  310 bits (795), Expect = 6e-82
 Identities = 158/279 (56%), Positives = 198/279 (70%)
 Frame = +1

Query: 343  INSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPDVRWLRDHPPELVIGD 522
            + + ED +A++ K  EN + SD      S T    +N  +   P +R  +  P EL+IGD
Sbjct: 990  VRTSEDNVADTAKSAENAEKSD------STTDEPNINQPDK-SPFIRIQKMQPKELIIGD 1042

Query: 523  IREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQR 702
               GV TRSR  +    +CF+S+IEPK+V +AL D  WI AMQEEL QF+RN+VWELV R
Sbjct: 1043 PNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPR 1102

Query: 703  PIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFL 882
            P   NVIGTKW+F+NK NEEG + RNKARLVA+GY Q EG+DFDETFAPVARLE+IR+ L
Sbjct: 1103 PEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLL 1162

Query: 883  AYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPR 1062
              A    F +YQMDVKSAFLNG L EE YVEQP GF   T  D VY+LKKALYGLKQAPR
Sbjct: 1163 GVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHLDHVYRLKKALYGLKQAPR 1222

Query: 1063 AWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            AWY+ L++FLT+ G+ KG +D+TLF  QD +++++ QIY
Sbjct: 1223 AWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1261



 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 27/81 (33%), Positives = 50/81 (61%)
 Frame = +1

Query: 22  LWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTR 201
           +WH++  HL+ + + K+     V G+P+   ++  +C  CQ GKQ+K S ++    +++ 
Sbjct: 691 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSM 750

Query: 202 ILHLLHMDLFGPVEPASINGE 264
           +L LLHMDL GP++  S+ G+
Sbjct: 751 VLELLHMDLMGPMQVESLGGK 771


>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  310 bits (794), Expect = 7e-82
 Identities = 166/314 (52%), Positives = 213/314 (67%), Gaps = 20/314 (6%)
 Frame = +1

Query: 298  PTIQKSPYAEAEAGIINSEE----DEIAESQK--QLENLQLSDYERADQSNTAAR----- 444
            P  + S  +E+ AG  +SE+    D+ ++S+K  ++E+   ++     +SN+ A      
Sbjct: 1088 PGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESCPEAEITPEAESNSEAEPSPKV 1147

Query: 445  ---------RLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIE 597
                     + N   ++QP  +    HP EL+IG      +TRS  +QE      +S IE
Sbjct: 1148 QNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIE 1207

Query: 598  PKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVR 777
            PK V +AL D  WI AMQEELNQF+RN VW+LV +P  +N+IGTKWVFRNK+NE+G V R
Sbjct: 1208 PKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTR 1267

Query: 778  NKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLE 957
            NKARLVA+GY Q+EGID+ ETFAPVARLEAIR+ L+YA +    +YQMDVKSAFLNG++E
Sbjct: 1268 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIE 1327

Query: 958  EEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLF 1137
            EEVYV+QPPGFE     D VYKLKK+LYGLKQAPRAWYD LS FL +N F +G+VD TLF
Sbjct: 1328 EEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLF 1387

Query: 1138 RIQDKKSILLVQIY 1179
            R   KK IL+VQIY
Sbjct: 1388 RRTLKKDILIVQIY 1401



 Score = 96.3 bits (238), Expect = 2e-17
 Identities = 43/87 (49%), Positives = 62/87 (71%)
 Frame = +1

Query: 1    STAESSWLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEK 180
            S  +  W+WHK+L H N++ I+K+++  LV+GLP+     +++C ACQKGK +KSSFK K
Sbjct: 792  SMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSK 851

Query: 181  TCPSSTRILHLLHMDLFGPVEPASING 261
               S++R L LLH+DLFGPV  AS+ G
Sbjct: 852  DIVSTSRPLELLHIDLFGPVNTASLYG 878


>ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  310 bits (793), Expect = 1e-81
 Identities = 154/250 (61%), Positives = 190/250 (76%)
 Frame = +1

Query: 430  NTAARRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDV 609
            N   ++   ++ L  + R+   HP +L++G+  +GVKTRS     +    F+SQIEP+  
Sbjct: 1586 NIIEKKEEGSSSLPKEWRYALSHPKDLILGNPEQGVKTRSSLNLFSNLA-FVSQIEPRSF 1644

Query: 610  SQALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKAR 789
              A  D  WI AMQEELNQFERNKVW+LV RP + ++IGTKWVFRNKM+E G+++RNKAR
Sbjct: 1645 KDAECDEFWILAMQEELNQFERNKVWKLVPRPSNASIIGTKWVFRNKMDENGNIIRNKAR 1704

Query: 790  LVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVY 969
            LVA+GYCQEEGID++ETFAPVARLEAIRM LA+A++KNF +YQMDVKSAFLNG + EEVY
Sbjct: 1705 LVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFILYQMDVKSAFLNGYIVEEVY 1764

Query: 970  VEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQD 1149
            VEQPPGFE   L + VYKL+KALYGLKQAPRAWYD LS+FL EN F  GK+D TLF    
Sbjct: 1765 VEQPPGFESFDLPNHVYKLEKALYGLKQAPRAWYDRLSKFLLENDFKMGKIDNTLFIKVK 1824

Query: 1150 KKSILLVQIY 1179
               +L+VQIY
Sbjct: 1825 NNDMLIVQIY 1834


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  309 bits (791), Expect = 2e-81
 Identities = 157/279 (56%), Positives = 198/279 (70%)
 Frame = +1

Query: 343  INSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPDVRWLRDHPPELVIGD 522
            + +  D +A++ K  EN + SD      S T    +N  +  +P +R  + HP EL+IGD
Sbjct: 964  VRTSGDNVADTAKSAENAENSD------SATDEPNINQPDK-RPSIRIQKMHPKELIIGD 1016

Query: 523  IREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQR 702
               GV TRSR  +    +CF+S+IEPK+V +AL D  WI AMQEEL QF+RN+VWELV R
Sbjct: 1017 PNRGVTTRSREIEIISNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPR 1076

Query: 703  PIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFL 882
            P   NVIGTKW+F+NK NEEG + RNKARLVA+GY Q EG+DFDETFAP ARLE+IR+ L
Sbjct: 1077 PEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPGARLESIRLLL 1136

Query: 883  AYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPR 1062
              A    F +YQMDVKSAFLNG L EE YVEQP GF   T  D VY+LKKALYGLKQAPR
Sbjct: 1137 GVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPR 1196

Query: 1063 AWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            AWY+ L++FLT+ G+ KG +D+TLF  QD +++++ QIY
Sbjct: 1197 AWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1235



 Score = 65.5 bits (158), Expect = 4e-08
 Identities = 27/78 (34%), Positives = 49/78 (62%)
 Frame = +1

Query: 22  LWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTR 201
           +WH++  HL+ + + K+     V G+P+   ++  +C  CQ GKQ+K S ++    +++R
Sbjct: 665 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSR 724

Query: 202 ILHLLHMDLFGPVEPASI 255
           +L LLHMDL GP++  S+
Sbjct: 725 VLELLHMDLMGPMQVESL 742


>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
            [Medicago truncatula]
          Length = 1654

 Score =  306 bits (783), Expect = 1e-80
 Identities = 164/319 (51%), Positives = 205/319 (64%), Gaps = 2/319 (0%)
 Frame = +1

Query: 229  FGPVEPASINGEDIEESADKLNHPTIQKSPYAEAEAGIINSEEDEIAESQKQLENLQLSD 408
            F   EP S   E  E +A   +     +S            E    AE   ++E+   ++
Sbjct: 1022 FDDREPGSKTPEQSESNAGTTDSEDASESDQPSNSEKYTEVESYPEAEITPEVESNSEAE 1081

Query: 409  YERADQSNTAARRL--NPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCF 582
                 Q+ +A+     N   ++QP  +    HP EL+IG      +TRS  +QE      
Sbjct: 1082 PSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEETLIGL 1141

Query: 583  ISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEE 762
            +S IEPK V +AL D  WI +MQEELNQF+RN VW+LV +P  +N+IGTKWVFRNK NE+
Sbjct: 1142 LSIIEPKTVEEALSDDGWILSMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKQNEQ 1201

Query: 763  GSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFL 942
            G V RNKARLVA+GY Q+EGID+ ETFAPVARLEAIR+ L+YA +    +YQMDVKSA L
Sbjct: 1202 GEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSALL 1261

Query: 943  NGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKV 1122
            NG++EEEVYV+QPPGFE     D VYKLKK+LYGLKQAPRAWYD LS FL +N F +G+V
Sbjct: 1262 NGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQV 1321

Query: 1123 DRTLFRIQDKKSILLVQIY 1179
            D TLFR   KK IL+VQIY
Sbjct: 1322 DTTLFRRTLKKDILIVQIY 1340



 Score = 80.9 bits (198), Expect = 9e-13
 Identities = 39/79 (49%), Positives = 56/79 (70%)
 Frame = +1

Query: 25  WHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSSTRI 204
           W++ L H N++ I+K+ +  LV+GLP+     +++C ACQKGK +KSSFK K   S++R 
Sbjct: 740 WYR-LGHANWRLISKIIKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRP 798

Query: 205 LHLLHMDLFGPVEPASING 261
           L LLH+DLFGPV  AS+ G
Sbjct: 799 LELLHIDLFGPVNTASLYG 817


>emb|CAN64335.1| hypothetical protein VITISV_001808 [Vitis vinifera]
          Length = 1885

 Score =  299 bits (766), Expect = 1e-78
 Identities = 154/277 (55%), Positives = 199/277 (71%), Gaps = 2/277 (0%)
 Frame = +1

Query: 355  EDEIAESQKQLENLQLSDYERADQSNTAARRLNPA--NLLQPDVRWLRDHPPELVIGDIR 528
            E+ I + +   EN +L   +   +     R+ N     LL    +++ +HP + +IG+  
Sbjct: 880  EESIHDWRLPWENCKLRTKDNKKKVERIPRKKNHLWHYLLLNKCKFVINHPQDQIIGNPL 939

Query: 529  EGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPI 708
             GV+TRS  +       FISQIEPK++  A+ D +W+ AMQ+ELNQFER++VWELV RP 
Sbjct: 940  SGVRTRSSLRNICNNLAFISQIEPKNIKDAIVDENWMIAMQKELNQFERSEVWELVPRPS 999

Query: 709  HQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLAY 888
            +Q+VIGTKWVFRNKM+E G +VRNKARLVA+GY QEEGID++ETFAPVARLEAIRM LA+
Sbjct: 1000 NQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEEGIDYEETFAPVARLEAIRMLLAF 1059

Query: 889  AAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAW 1068
            A  K+F +YQMDVKSAFLNG + EE+YVEQPPGF+     + V+KLKKALYGLKQAPRAW
Sbjct: 1060 ACFKDFILYQMDVKSAFLNGFINEEIYVEQPPGFQSFNFPNHVFKLKKALYGLKQAPRAW 1119

Query: 1069 YDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            Y+ LS+FL +  F  GK+D TLF    +  +LLVQIY
Sbjct: 1120 YERLSKFLLKKSFKMGKIDTTLFIKTKENDMLLVQIY 1156



 Score = 95.9 bits (237), Expect = 3e-17
 Identities = 44/88 (50%), Positives = 59/88 (67%)
 Frame = +1

Query: 1   STAESSWLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEK 180
           S  + SWLWH++L H N   I++L +  LV GLP    +K+ +C+ACQ GKQIK+SFK K
Sbjct: 596 SMHDQSWLWHRRLGHANMDLISQLNKDELVRGLPKINFQKDKICEACQMGKQIKNSFKNK 655

Query: 181 TCPSSTRILHLLHMDLFGPVEPASINGE 264
              S++R L LLHMDLFGP    S+ G+
Sbjct: 656 NFISTSRPLELLHMDLFGPSRTPSLGGK 683


>emb|CAN63777.1| hypothetical protein VITISV_043745 [Vitis vinifera]
          Length = 898

 Score =  295 bits (754), Expect = 3e-77
 Identities = 146/238 (61%), Positives = 182/238 (76%)
 Frame = +1

Query: 466  LQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQA 645
            L  D +++ +HP + +IG+   GV+TRS  +       FI QIEPK++  A+ D +W+ A
Sbjct: 580  LPKDWKFVINHPQDQIIGNPXSGVRTRSSLRNICNNLAFIXQIEPKNIKDAIVDENWMIA 639

Query: 646  MQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGI 825
            MQEELNQFER++VWELV RP +Q+VIGTKWVFRNKM+E G +VRNKARLVA+GY QE  I
Sbjct: 640  MQEELNQFERSEVWELVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEXXI 699

Query: 826  DFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTL 1005
            D++ETFAPVARLEAIRM LA+A  K+F +YQMDVKS FLNG + EEVY EQPPGF+    
Sbjct: 700  DYEETFAPVARLEAIRMLLAFACFKDFILYQMDVKSXFLNGFINEEVYXEQPPGFQSFNF 759

Query: 1006 GDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
             + V+KLKKALYGLKQAPRAWY+ LS+FL + GF  GK+D TLF    +K +LLVQIY
Sbjct: 760  PNHVFKLKKALYGLKQAPRAWYERLSKFLXKKGFKMGKIDTTLFIKTKEKDMLLVQIY 817



 Score = 95.9 bits (237), Expect = 3e-17
 Identities = 45/88 (51%), Positives = 59/88 (67%)
 Frame = +1

Query: 1   STAESSWLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEK 180
           S  + SWLWH++L H N   I++L +  LV GLP    +K+ VC+ACQ GKQIK+SFK K
Sbjct: 225 SMHDQSWLWHRRLRHANMDLISQLNKDELVRGLPKINFQKDKVCEACQMGKQIKNSFKNK 284

Query: 181 TCPSSTRILHLLHMDLFGPVEPASINGE 264
              S++R L LLHMDLFGP    S+ G+
Sbjct: 285 NFISTSRPLELLHMDLFGPSRTPSLGGK 312


>gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
          Length = 800

 Score =  293 bits (751), Expect = 7e-77
 Identities = 157/308 (50%), Positives = 196/308 (63%)
 Frame = +1

Query: 256  NGEDIEESADKLNHPTIQKSPYAEAEAGIINSEEDEIAESQKQLENLQLSDYERADQSNT 435
            N +D   S+ + + PT  +    EA+     ++EDE  +     +    +D E+ D+   
Sbjct: 228  NAQDQPSSSMQASPPTQNED---EAQNDEEQNQEDEPPQDDSNNQGGDANDQEKEDEEEP 284

Query: 436  AARRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQ 615
                      +Q      RDHP + ++GDI +GV TRSR         F+S IEP  V +
Sbjct: 285  RPPHPRVHQAIQ------RDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEE 338

Query: 616  ALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLV 795
            AL D+ W+ AMQEELN F RN+VW LV RP +QNV+GTKWVFRNK +E G V RNKARLV
Sbjct: 339  ALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLV 397

Query: 796  AKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVE 975
            AKGY Q EG+DF ET+APVARLE+IR+ LAYA +  F +YQMDVKSAFLNG ++EEVYVE
Sbjct: 398  AKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVE 457

Query: 976  QPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKK 1155
            QPPGFE     + VY+L KALYGLKQAPRAWY+ L  FL  NGF  GK D TLF    K 
Sbjct: 458  QPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKILKN 517

Query: 1156 SILLVQIY 1179
             + + QIY
Sbjct: 518  DLFVCQIY 525


>gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]
          Length = 1706

 Score =  293 bits (750), Expect = 9e-77
 Identities = 170/350 (48%), Positives = 214/350 (61%), Gaps = 6/350 (1%)
 Frame = +1

Query: 148  GKQIKSSFKEKTCPSSTRILHLLHMDLFGPVEPASINGEDIEESADKLNHPT--IQKSPY 321
            G QI+    ++     T  + L +M + G V P     ++ EE     + P+  +Q SP 
Sbjct: 1257 GSQIEQVDLDEIGEEETPCIALRNMSI-GDVCP-----KESEEPPIAQDQPSSSMQASPP 1310

Query: 322  AEAEAGI-INSEEDEIAESQKQLENLQ---LSDYERADQSNTAARRLNPANLLQPDVRWL 489
             + E G  ++ EED+  E  +   N Q    +D E+ D+             +Q      
Sbjct: 1311 TQNEDGAQVDEEEDQSNEPPQDDGNDQGGDANDQEKEDEEEPRPPHPRVHQAIQ------ 1364

Query: 490  RDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQF 669
            RDHP + ++GDI +GV TRSR         F+S IEP  V +AL D+ W+ AMQEELN F
Sbjct: 1365 RDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNF 1424

Query: 670  ERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAP 849
             RN+VW LV RP +QNV+GTKWVFRNK +E G V RNKARLVAKGY Q EG+DF ET+AP
Sbjct: 1425 TRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAP 1483

Query: 850  VARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLK 1029
            VARLE+IR+ LAYA +  F +YQMDVKSAFLNG ++EEVYVEQPPGFE     + VYKL 
Sbjct: 1484 VARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLS 1543

Query: 1030 KALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            KALYGLKQAPRAWY+ L  FL  NGF  GK D TLF       + + QIY
Sbjct: 1544 KALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLNNDLFVCQIY 1593



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
 Frame = +1

Query: 19   WLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSST 198
            WLWH++L+H+  K ++KL +   + GL +   +K+ +C ACQ GKQ+ S    K   ++ 
Sbjct: 972  WLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGSHHPHKNIMTTN 1031

Query: 199  RILHLLHMDLFGPVEPASINGED-IEESADKLNHPTIQKSPYAEAEAGIINSEEDEIAES 375
            R L LLHMDLFGP+   SI G        D  +  T +KS   E   G +   ++E    
Sbjct: 1032 RPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWEKSQTQETLKGFLRRAQNEFGLR 1091

Query: 376  QKQLEN 393
             K++ +
Sbjct: 1092 IKKIRS 1097


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  293 bits (750), Expect = 9e-77
 Identities = 155/306 (50%), Positives = 193/306 (63%), Gaps = 12/306 (3%)
 Frame = +1

Query: 298  PTIQKSPYAEAEAGIINSEEDEIAESQKQLENLQ------------LSDYERADQSNTAA 441
            P+ Q  P +  +A      EDE    ++Q + ++             +D E+ D+     
Sbjct: 1277 PSTQDQPPSSMQASPPTQNEDEAQNDEEQNQEVKPPQDKSNDQGGDTNDQEKEDEEEPRP 1336

Query: 442  RRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQAL 621
                    +Q      RDHP + ++GDI +GV TRSR         F+S IEP  V +AL
Sbjct: 1337 PHPRVHQAIQ------RDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEAL 1390

Query: 622  DDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAK 801
             D+ W+ AMQEELN F RN+VW LV RP +QNV+GTKWVFRNK +E G V RNKARLVAK
Sbjct: 1391 QDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAK 1449

Query: 802  GYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQP 981
            GY Q EG+DFDET+APVARLE+IR+ LAYA +  F +YQMDVKSAFLNG ++EEVYVEQP
Sbjct: 1450 GYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQP 1509

Query: 982  PGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSI 1161
            PGFE     + VY+L KALYGLKQAPRAWY+ L  FL  NGF  GK D TLF    +  +
Sbjct: 1510 PGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDL 1569

Query: 1162 LLVQIY 1179
             + QIY
Sbjct: 1570 FVCQIY 1575



 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = +1

Query: 19   WLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSST 198
            WLWH++L+H+  K ++KL +   + GL +   +K+ +C ACQ GKQ+ +    K   ++ 
Sbjct: 949  WLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTTD 1008

Query: 199  RILHLLHMDLFGPVEPASING 261
            R L LLHMDLFGP+   SI G
Sbjct: 1009 RPLELLHMDLFGPIAYISIGG 1029


>gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 904

 Score =  292 bits (748), Expect = 2e-76
 Identities = 163/317 (51%), Positives = 201/317 (63%), Gaps = 2/317 (0%)
 Frame = +1

Query: 235  PVEPASINGEDIEESADKLNHPTIQKSPYAEAEAGIINSEEDEIAESQKQLENLQLSDYE 414
            PV PA       EE +D+         P + AE  I     D + +   ++     +D E
Sbjct: 397  PVRPAH------EERSDR---------PGSSAEGSI-----DAVRDGPPKITTSTSTDTE 436

Query: 415  RADQSNTAARRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSR--TQQEAMFTCFIS 588
            R   S  AA    P ++        R HPPE +IG+I E   TRS+  T      + F++
Sbjct: 437  RGSTSEVAA----PLHIQ-------RRHPPEQIIGNIGERT-TRSKVTTHDVCANSAFVA 484

Query: 589  QIEPKDVSQALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGS 768
              EPKDVS AL D  WI AM EEL  FERNKVW LV+ P   N+IGTKWVF+NK NE+G 
Sbjct: 485  SFEPKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNIIGTKWVFKNKQNEDGL 544

Query: 769  VVRNKARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNG 948
            VVRNKARLVA+G+ Q EG+DFDETFAP+AR+EAIR+ L +AA K F +YQMDVKSAFLNG
Sbjct: 545  VVRNKARLVAQGFTQVEGLDFDETFAPIARIEAIRLLLTFAASKGFKLYQMDVKSAFLNG 604

Query: 949  LLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDR 1128
             ++EEVYV+QPPGFE     + ++KL KALYGLKQAPRAWYD L  FL   GFT GKVD+
Sbjct: 605  FIQEEVYVKQPPGFENPDFPNHIFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDK 664

Query: 1129 TLFRIQDKKSILLVQIY 1179
            TLF ++   + L VQIY
Sbjct: 665  TLFVLKHGDNQLFVQIY 681


>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  291 bits (746), Expect = 3e-76
 Identities = 158/312 (50%), Positives = 196/312 (62%), Gaps = 6/312 (1%)
 Frame = +1

Query: 262  EDIEESADKLNHPT--IQKSPYAEAEAGIINSEE----DEIAESQKQLENLQLSDYERAD 423
            ++ EE     + P+  +Q SP  + E    N EE    DE  +     +    +D E+ D
Sbjct: 442  KEFEEPPSTQDQPSSSMQASPPTQNEDEAQNDEEQNQEDEPPQDDSNDQGGDTNDQEKED 501

Query: 424  QSNTAARRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPK 603
            +             +Q      RDHP + ++GDI +GV TRSR         F+S IEP 
Sbjct: 502  EEEPRPPHPRVHQAIQ------RDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPH 555

Query: 604  DVSQALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNK 783
             V +AL D+ W+ AMQEELN F RN+VW LV RP +QNV+GTKWVFRNK +E G V RNK
Sbjct: 556  RVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNK 614

Query: 784  ARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEE 963
            ARLVAKGY Q EG+DF ET+APVARLE+IR+ LAYA +  F +YQMDVKSAFLNG ++EE
Sbjct: 615  ARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEE 674

Query: 964  VYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRI 1143
            VYVEQPPGFE     + VY+L KALYGLKQAPRAWY+ L  FL  NGF  GK D TLF  
Sbjct: 675  VYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTK 734

Query: 1144 QDKKSILLVQIY 1179
              +  + + QIY
Sbjct: 735  TLENDLFVCQIY 746



 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = +1

Query: 19  WLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSST 198
           WLWH++L+H+  K ++KL +   + GL +   +K+ +C ACQ GKQ+ +    K   ++ 
Sbjct: 120 WLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTTD 179

Query: 199 RILHLLHMDLFGPVEPASING 261
           R L LLHMDLFGP+   SI G
Sbjct: 180 RPLELLHMDLFGPIAYISIGG 200


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  291 bits (744), Expect = 5e-76
 Identities = 158/312 (50%), Positives = 196/312 (62%), Gaps = 6/312 (1%)
 Frame = +1

Query: 262  EDIEESADKLNHPT--IQKSPYAEAEAGIINSEE----DEIAESQKQLENLQLSDYERAD 423
            ++ EE     + P+  +Q SP  + E    N EE    DE  +     +    +D E+ D
Sbjct: 442  KESEEPPSTQDQPSSSMQASPPTQNEDEAQNDEEQNQEDEPPQDDSNDQGGDTNDQEKED 501

Query: 424  QSNTAARRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPK 603
            +             +Q      RDHP + ++GDI +GV TRSR         F+S IEP 
Sbjct: 502  EEEPRPPHPRVHQAIQ------RDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPH 555

Query: 604  DVSQALDDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNK 783
             V +AL D+ W+ AMQEELN F RN+VW LV RP +QNV+GTKWVFRNK +E G V RNK
Sbjct: 556  RVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNK 614

Query: 784  ARLVAKGYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEE 963
            ARLVAKGY Q EG+DF ET+APVARLE+IR+ LAYA +  F +YQMDVKSAFLNG ++EE
Sbjct: 615  ARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEE 674

Query: 964  VYVEQPPGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRI 1143
            VYVEQPPGFE     + VY+L KALYGLKQAPRAWY+ L  FL  NGF  GK D TLF  
Sbjct: 675  VYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTK 734

Query: 1144 QDKKSILLVQIY 1179
              +  + + QIY
Sbjct: 735  TLENDLFVCQIY 746



 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = +1

Query: 19  WLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSST 198
           WLWH++L+H+  K ++KL +   + GL +   +K+ +C ACQ GKQ+ +    K   ++ 
Sbjct: 120 WLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTTD 179

Query: 199 RILHLLHMDLFGPVEPASING 261
           R L LLHMDLFGP+   SI G
Sbjct: 180 RPLELLHMDLFGPIAYISIGG 200


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  289 bits (739), Expect = 2e-75
 Identities = 162/344 (47%), Positives = 211/344 (61%)
 Frame = +1

Query: 148  GKQIKSSFKEKTCPSSTRILHLLHMDLFGPVEPASINGEDIEESADKLNHPTIQKSPYAE 327
            G Q++    ++T       + L +M + G V P     E++  + D+ +  T    P   
Sbjct: 1108 GSQVEQVDLDETGNDEAPCVALRNMSI-GDVCPKE--SEELPSAQDQPSSSTQASPPTQN 1164

Query: 328  AEAGIINSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPDVRWLRDHPPE 507
             +   ++  ED+  E  +     Q  D    D+ +   R  +P   +   ++  +DHP +
Sbjct: 1165 EDEAQVDEVEDQANEPPQDDGIDQGGDANDQDKEDEEQRPPHPR--VHQAIQ--QDHPVD 1220

Query: 508  LVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVW 687
             ++GDI +GV TRSR         F+S IEP  V +AL D+ W+ AMQEELN F RN+VW
Sbjct: 1221 TILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVW 1280

Query: 688  ELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEA 867
             LV RP +QNV+GTKWVFRNK +E G V RNKARLVAKGY Q EG+DF ET+APVARLE+
Sbjct: 1281 HLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLES 1339

Query: 868  IRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGL 1047
            IR+ LAYA +  F +YQMDVKSAFLNG ++EEVYVEQPPGFE     + VYKL KALYGL
Sbjct: 1340 IRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGL 1399

Query: 1048 KQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            KQAPRAWY+ L  FL  NGF  GK D TLF    +  + + QIY
Sbjct: 1400 KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIY 1443


>gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]
          Length = 1694

 Score =  289 bits (739), Expect = 2e-75
 Identities = 155/306 (50%), Positives = 195/306 (63%)
 Frame = +1

Query: 262  EDIEESADKLNHPTIQKSPYAEAEAGIINSEEDEIAESQKQLENLQLSDYERADQSNTAA 441
            E+   + D+ +  T    P    +   ++  ED+  E  +   N Q  D    D+ +   
Sbjct: 1246 EEPPNAQDQPSSSTQASPPTQNEDEAQVDEVEDQANEPPQDDVNDQGGDANDQDKEDEEQ 1305

Query: 442  RRLNPANLLQPDVRWLRDHPPELVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQAL 621
            R  +P   +   ++  RDHP + ++GDI +GV TRSR         F+S IEP  V +AL
Sbjct: 1306 RPPHPR--VHQAIQ--RDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVDEAL 1361

Query: 622  DDTHWIQAMQEELNQFERNKVWELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAK 801
             D+ W+ AMQEELN F RN+VW LV RP +QNV+GTKWVFRNK +E G V RNKARLVAK
Sbjct: 1362 QDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAK 1420

Query: 802  GYCQEEGIDFDETFAPVARLEAIRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQP 981
            GY Q EG+DF ET+APVARLE+IR+ LAYA +  F +YQMDVKSAFLNG ++EEVYVEQP
Sbjct: 1421 GYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQP 1480

Query: 982  PGFEQKTLGDKVYKLKKALYGLKQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSI 1161
            PGFE     + VY+L KALYGLKQAPRAWY+ L  FL  NGF  GK D TLF       +
Sbjct: 1481 PGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLDNDL 1540

Query: 1162 LLVQIY 1179
             + QIY
Sbjct: 1541 FVCQIY 1546



 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = +1

Query: 19   WLWHKKLSHLNFKTINKLARSNLVEGLPDSVNKKESVCDACQKGKQIKSSFKEKTCPSST 198
            WLWH++L+H+  K ++KL +   + GL +   +K+ +C ACQ GKQ+ +    K   ++ 
Sbjct: 959  WLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGAHHPHKNIMTTD 1018

Query: 199  RILHLLHMDLFGPVEPASING 261
            R L LLHMDLFGP+   SI G
Sbjct: 1019 RPLELLHMDLFGPIAYISIGG 1039


>gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays]
          Length = 1604

 Score =  289 bits (739), Expect = 2e-75
 Identities = 162/344 (47%), Positives = 211/344 (61%)
 Frame = +1

Query: 148  GKQIKSSFKEKTCPSSTRILHLLHMDLFGPVEPASINGEDIEESADKLNHPTIQKSPYAE 327
            G Q++    ++T       + L +M + G V P     E++  + D+ +  T    P   
Sbjct: 1108 GSQVEQVDLDETGNDEAPCVALRNMSI-GDVCPKE--SEELPSAQDQPSSSTQASPPTQN 1164

Query: 328  AEAGIINSEEDEIAESQKQLENLQLSDYERADQSNTAARRLNPANLLQPDVRWLRDHPPE 507
             +   ++  ED+  E  +     Q  D    D+ +   R  +P   +   ++  +DHP +
Sbjct: 1165 EDEAQVDEVEDQANEPPQDDGIDQGGDANDQDKEDEEQRPPHPR--VHQAIQ--QDHPVD 1220

Query: 508  LVIGDIREGVKTRSRTQQEAMFTCFISQIEPKDVSQALDDTHWIQAMQEELNQFERNKVW 687
             ++GDI +GV TRSR         F+S IEP  V +AL D+ W+ AMQEELN F RN+VW
Sbjct: 1221 TILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVW 1280

Query: 688  ELVQRPIHQNVIGTKWVFRNKMNEEGSVVRNKARLVAKGYCQEEGIDFDETFAPVARLEA 867
             LV RP +QNV+GTKWVFRNK +E G V RNKARLVAKGY Q EG+DF ET+APVARLE+
Sbjct: 1281 HLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLES 1339

Query: 868  IRMFLAYAAHKNFTVYQMDVKSAFLNGLLEEEVYVEQPPGFEQKTLGDKVYKLKKALYGL 1047
            IR+ LAYA +  F +YQMDVKSAFLNG ++EEVYVEQPPGFE     + VYKL KALYGL
Sbjct: 1340 IRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGL 1399

Query: 1048 KQAPRAWYDTLSQFLTENGFTKGKVDRTLFRIQDKKSILLVQIY 1179
            KQAPRAWY+ L  FL  NGF  GK D TLF    +  + + QIY
Sbjct: 1400 KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIY 1443