BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00007163
         (2511 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   998   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   993   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   989   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   984   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       984   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              983   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   983   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   972   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   972   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   971   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   967   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...   966   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   966   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   963   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   960   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   947   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   947   0.0  
emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]            942   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...   930   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   928   0.0  

>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  998 bits (2581), Expect = 0.0
 Identities = 486/567 (85%), Positives = 524/567 (92%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VPTKQMQ+VYEALDTLG+
Sbjct: 405  PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGS 464

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDAXXXXXXXXXXXXXXKINQ 2150
            TKWRVNKRILSVVESIWA GGN+AGLV+R+DVPIPEL SDD               KINQ
Sbjct: 465  TKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQ 524

Query: 2149 ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1970
            E HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE
Sbjct: 525  ELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 584

Query: 1969 GRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKA 1790
            GRPLGKSGLRWLKIHLA+LY GG+EKL YD R++FVEN+I +I DSA+N LNGNRWWL A
Sbjct: 585  GRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNA 644

Query: 1789 EDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIA 1610
            EDPFQCLAACINLSEAL+SSSPHTV SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+A
Sbjct: 645  EDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVA 704

Query: 1609 GDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVT 1430
            GDKPADVY+EIA RV +I++ DS KD ATDP+ALLAKLLI QVDRKLVKQTVMTSVYGVT
Sbjct: 705  GDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVT 764

Query: 1429 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1250
            YVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK+I
Sbjct: 765  YVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVI 824

Query: 1249 ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 1070
            ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVH
Sbjct: 825  ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVH 884

Query: 1069 SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLE 890
            SLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPILE LLE
Sbjct: 885  SLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLE 944

Query: 889  SFETSYPTLTFPALPNRGDFDLNKVVQ 809
            SF+ SYP LTFP LP RGDFDL +V++
Sbjct: 945  SFQNSYPALTFPPLPKRGDFDLVEVLE 971


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  993 bits (2567), Expect = 0.0
 Identities = 482/567 (85%), Positives = 520/567 (91%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VP KQMQ+VYEALDTLG+
Sbjct: 443  PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGS 502

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDAXXXXXXXXXXXXXXKINQ 2150
            TKWRVNKRILSVVESIWA GGN+AGLV+R+DVPIPEL SDD               KINQ
Sbjct: 503  TKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQ 562

Query: 2149 ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1970
            E HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE
Sbjct: 563  ELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 622

Query: 1969 GRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKA 1790
            GRPLGKSGLRWLK+HLA+LY GG+EKL YD RI+FVEN+I +I DSA N LNGNRWWL A
Sbjct: 623  GRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNA 682

Query: 1789 EDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIA 1610
            EDP QCLAACINLSEAL+S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+A
Sbjct: 683  EDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVA 742

Query: 1609 GDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVT 1430
            G+KPADVY+EIA RV +I++ DS KD ATDP+ALLAKLLI QVDRKLVKQTVMTSVYGVT
Sbjct: 743  GEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVT 802

Query: 1429 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1250
            YVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK+I
Sbjct: 803  YVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVI 862

Query: 1249 ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 1070
            ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVH
Sbjct: 863  ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVH 922

Query: 1069 SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLE 890
            SLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPILE LLE
Sbjct: 923  SLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLE 982

Query: 889  SFETSYPTLTFPALPNRGDFDLNKVVQ 809
            SF+ SYP LTFP LP RGDFDL +V++
Sbjct: 983  SFQESYPALTFPPLPKRGDFDLQEVLE 1009


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score =  989 bits (2557), Expect = 0.0
 Identities = 479/567 (84%), Positives = 520/567 (91%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VP KQMQ+VYEALDTLG+
Sbjct: 435  PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGS 494

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDAXXXXXXXXXXXXXXKINQ 2150
            TKWRVNKRILSVVE+IWA GGN+AGLV+R+DVPIPEL SDD               KINQ
Sbjct: 495  TKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQ 554

Query: 2149 ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1970
            E HSQRCDTELKLSVARK++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE
Sbjct: 555  ELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 614

Query: 1969 GRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKA 1790
            GRPLGKSGLRWLK+HLA+LY GG+EKL YD RI+FVEN+I +I DSA N LNGNRWWL A
Sbjct: 615  GRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNA 674

Query: 1789 EDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIA 1610
            EDP QCLAACINLSEA++S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+A
Sbjct: 675  EDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVA 734

Query: 1609 GDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVT 1430
            G+KPADVY+EIA RV +I++ DS KD ATDP+ALLAKLLI QVDRKLVKQTVMTSVYGVT
Sbjct: 735  GEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVT 794

Query: 1429 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1250
            YVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK+I
Sbjct: 795  YVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVI 854

Query: 1249 ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 1070
            ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVH
Sbjct: 855  ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVH 914

Query: 1069 SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLE 890
            SLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPILE LLE
Sbjct: 915  SLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLE 974

Query: 889  SFETSYPTLTFPALPNRGDFDLNKVVQ 809
            SF+ SYP LTFP LP RGDFDL +V++
Sbjct: 975  SFQESYPALTFPPLPKRGDFDLREVLE 1001


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  984 bits (2545), Expect = 0.0
 Identities = 479/568 (84%), Positives = 522/568 (91%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV+ VPTKQMQ+VYEALDTLG+
Sbjct: 404  PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGS 463

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVNKRIL+VVESIWA GGN+AGLV+R+DVPIPEL  SDD               KIN
Sbjct: 464  TKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKIN 523

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QE HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA
Sbjct: 524  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 583

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKIHLA+LY GGVEKL YD R++FVEN+I +I DSA+N LNGNRWWL 
Sbjct: 584  EGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLN 643

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSEAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+
Sbjct: 644  AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 703

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVY+EIA RV +I++ DS KD A DP+ALLAKLLI QVDRKLVKQTVMTSVYGV
Sbjct: 704  AGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGV 763

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK+
Sbjct: 764  TYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKV 823

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IA ENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQ+LALQREGD+VEVRKQRTAFPPNFV
Sbjct: 824  IALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFV 883

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++PILE LL
Sbjct: 884  HSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLL 943

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            E+F+ SYP LTFP LP RGDF+L +V++
Sbjct: 944  ENFQKSYPALTFPPLPKRGDFNLREVLE 971


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  984 bits (2544), Expect = 0.0
 Identities = 476/566 (84%), Positives = 516/566 (91%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            P++PML+PPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDAVK V  ++MQKV+EALDTLGN
Sbjct: 380  PHIPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEALDTLGN 439

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDAXXXXXXXXXXXXXXKINQ 2150
            TKWRVNK ILSVVE IWAAGGN+AGLVNREDVP+PEL SDD               K N 
Sbjct: 440  TKWRVNKSILSVVEDIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAKKNNM 499

Query: 2149 ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1970
            E HS RCDTELKLSVAR MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGILEF+E
Sbjct: 500  EMHSLRCDTELKLSVARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGILEFSE 559

Query: 1969 GRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKA 1790
            GRPLGKSGL WLK+HLANL+GGGV+KL YD R+SFVEN I E+FDSADN L+GNRWWLKA
Sbjct: 560  GRPLGKSGLYWLKLHLANLFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGNRWWLKA 619

Query: 1789 EDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIA 1610
            EDPFQ LAACIN+SEALRSSSPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL+A
Sbjct: 620  EDPFQFLAACINISEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVA 679

Query: 1609 GDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVT 1430
            G KP DVYSEIAERV +IMK DSEKD A DP+A+LAKLLIGQVDRKLVKQTVMTSVYGVT
Sbjct: 680  GHKPTDVYSEIAERVLDIMKSDSEKDPADDPNAVLAKLLIGQVDRKLVKQTVMTSVYGVT 739

Query: 1429 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1250
            YVGAREQI++RL EKG I DD++LF AACYAAKVT+AALG+LFQAARAIM WLGDCAKII
Sbjct: 740  YVGAREQIRKRLAEKGFINDDKVLFMAACYAAKVTMAALGQLFQAARAIMSWLGDCAKII 799

Query: 1249 ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 1070
            ASENQPVRWTTPLGLPVVQPYFKT+RHVIRTSLQVLALQREGDSVEVRKQ+TAFPPNFVH
Sbjct: 800  ASENQPVRWTTPLGLPVVQPYFKTKRHVIRTSLQVLALQREGDSVEVRKQKTAFPPNFVH 859

Query: 1069 SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLE 890
            SLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVD+MNQILR+KFVDLY+MPILE LLE
Sbjct: 860  SLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDKMNQILREKFVDLYSMPILEDLLE 919

Query: 889  SFETSYPTLTFPALPNRGDFDLNKVV 812
            SF++SYPTL FP LP RGDFDL  V+
Sbjct: 920  SFQSSYPTLRFPPLPKRGDFDLRNVL 945


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  983 bits (2541), Expect = 0.0
 Identities = 470/568 (82%), Positives = 525/568 (92%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPML+PPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDAVK+VP +Q+QKV+EALDTLGN
Sbjct: 235  PYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGN 294

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLS-DDAXXXXXXXXXXXXXXKIN 2153
            TKWR+N+R+LSVVESIWA GGNL GLV+RE+VP+PE  S +D               KIN
Sbjct: 295  TKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKIN 354

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHS RCDTE+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 355  QERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 414

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKI LANLY GGVEKLSYDGR++FV+N++ ++FDSADN LNGNRWWL 
Sbjct: 415  EGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLT 474

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSEALRSSSPHTV+SHLPIHQDGSCNGLQHYAALGR+S EA+AVNL+
Sbjct: 475  AEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLV 534

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVH IMKRDS KD ATDP ALLAK+LIGQVDRKLVKQTVMTSVYGV
Sbjct: 535  AGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGV 594

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TY+GAREQIKRRL EKGLITD+RLLF+AACYAAKVTLAALGE+FQAAR IM WLG+CAK+
Sbjct: 595  TYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKV 654

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPV+WTTPLGLPV+QPY K++RH+IRTSLQVLALQREG  V +RKQRTAFPPNFV
Sbjct: 655  IASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFV 714

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MNQILR+KFV+LY+MPILE+LL
Sbjct: 715  HSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLL 774

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ESF+TS+PTLTFP LP+RG+FDL +V++
Sbjct: 775  ESFQTSHPTLTFPPLPDRGNFDLREVLE 802


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  983 bits (2541), Expect = 0.0
 Identities = 470/568 (82%), Positives = 525/568 (92%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPML+PPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDAVK+VP +Q+QKV+EALDTLGN
Sbjct: 406  PYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGN 465

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLS-DDAXXXXXXXXXXXXXXKIN 2153
            TKWR+N+R+LSVVESIWA GGNL GLV+RE+VP+PE  S +D               KIN
Sbjct: 466  TKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKIN 525

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHS RCDTE+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 526  QERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 585

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKI LANLY GGVEKLSYDGR++FV+N++ ++FDSADN LNGNRWWL 
Sbjct: 586  EGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLT 645

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSEALRSSSPHTV+SHLPIHQDGSCNGLQHYAALGR+S EA+AVNL+
Sbjct: 646  AEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLV 705

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVH IMKRDS KD ATDP ALLAK+LIGQVDRKLVKQTVMTSVYGV
Sbjct: 706  AGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGV 765

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TY+GAREQIKRRL EKGLITD+RLLF+AACYAAKVTLAALGE+FQAAR IM WLG+CAK+
Sbjct: 766  TYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKV 825

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPV+WTTPLGLPV+QPY K++RH+IRTSLQVLALQREG  V +RKQRTAFPPNFV
Sbjct: 826  IASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFV 885

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MNQILR+KFV+LY+MPILE+LL
Sbjct: 886  HSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLL 945

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ESF+TS+PTLTFP LP+RG+FDL +V++
Sbjct: 946  ESFQTSHPTLTFPPLPDRGNFDLREVLE 973


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  972 bits (2512), Expect = 0.0
 Identities = 466/568 (82%), Positives = 516/568 (90%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPK+W+GYDKGG+LFLPSY+MRTHGSR+Q DA++ +   QMQKV+EALD LG+
Sbjct: 403  PYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGS 462

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVNK++LSVVESIWA GGN+AGLVNREDVP+P+   S+D               KIN
Sbjct: 463  TKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKIN 522

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 523  QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 582

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKIHLANLY GGVEKLSY+GR++FV+N+I +IFDSA N +NGNRWWL 
Sbjct: 583  EGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLT 642

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+
Sbjct: 643  AEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV 702

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
             GDKPADVYSEIA RVH IMKRDS KD  T P+ALLA++L+ Q+DRKLVKQTVMTSVYGV
Sbjct: 703  DGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGV 762

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGDCAK+
Sbjct: 763  TYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKV 822

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLALQRE +SV++RKQRTAFPPNFV
Sbjct: 823  IASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFV 882

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTH CDVD+MN+ILR+KFV+LY+MPILESLL
Sbjct: 883  HSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLL 942

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 943  ESFQASYPALTFPPLPERGDFDLLQVLE 970


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  972 bits (2512), Expect = 0.0
 Identities = 471/568 (82%), Positives = 518/568 (91%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PY PMLVPPKKWRGYDKGG+LFLPSY+MRTHGSRQQQDAV++VP KQMQKV+EALDTLGN
Sbjct: 409  PYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGN 468

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLS-DDAXXXXXXXXXXXXXXKIN 2153
            TKWRVN ++L VVE IWA+GGN AGLVNR D+PIPE LS DD               KIN
Sbjct: 469  TKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKIN 528

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEFA
Sbjct: 529  QERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFA 588

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGL WLKIHLANLY GGVEKLS+DGR++FVEN+++EIFDSA+N +NG RWWL 
Sbjct: 589  EGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLT 648

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSEAL+S+SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+
Sbjct: 649  AEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNLV 708

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            A +KP+DVYSEIA RVH I++RDS KD AT+P ALLAK+LI +VDRKLVKQTVMTSVYGV
Sbjct: 709  AAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGV 768

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKG ITDDR+LFSAACYAAKVTL ALGELFQAAR IMGWLGDCAK+
Sbjct: 769  TYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAKV 828

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASE+QPVRWTTPLGLPVVQPY+KTQRH+IRTSLQVLALQREG SV+VRKQRTAFPPNFV
Sbjct: 829  IASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFV 888

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDA LRFAGVHDSFWTHA D D MN+ILR+KFV+LYNMPILE+LL
Sbjct: 889  HSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILENLL 948

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            E F+TSYPTL FP+LP RG+FDL +V++
Sbjct: 949  EDFQTSYPTLKFPSLPERGNFDLQEVLR 976


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  971 bits (2510), Expect = 0.0
 Identities = 463/568 (81%), Positives = 527/568 (92%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDA+K V  K+MQKV+EALDTLG+
Sbjct: 405  PYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGS 464

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVNK++L+VVESIWA+GGN+AGLV+R D+PIPE   S+D+              KIN
Sbjct: 465  TKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKIN 524

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            +ERHSQRCDTELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 525  RERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 584

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLG+SGL WLKIHLANL+ GGVEKLS+DGR++FV+N++ +IFDSA+N +NGNRWWL 
Sbjct: 585  EGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLT 644

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSE+L+SSSPH+V+S+LPIHQDGSCNGLQHYAALGRDS EAAAVNL+
Sbjct: 645  AEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV 704

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVHNIMKRDS+KD AT+P+A LAKLLI QVDRKLVKQTVMTSVYGV
Sbjct: 705  AGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGV 764

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            T+VGAREQIKRRLEEKG ITDDR+LF+AACY AKVTLAALGELFQAAR IMGWLGDCAK+
Sbjct: 765  TFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKV 824

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPV+WTTPLGLPVVQPY+K++RH+IRTSLQVLALQREGDSVEVRKQRTAFPPNFV
Sbjct: 825  IASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 884

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++MNQILR+KFV+LY+MP+LE+L 
Sbjct: 885  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLF 944

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ES +TSYP+L FP LP RG+FDL +V++
Sbjct: 945  ESVQTSYPSLVFPPLPERGNFDLREVLK 972


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  967 bits (2500), Expect = 0.0
 Identities = 464/568 (81%), Positives = 521/568 (91%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A+K+V    M+KV+EALDTLG+
Sbjct: 436  PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 495

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVNK++LSV+ESIW +GGN+AGLV+R DVPIPE  LS+D               KIN
Sbjct: 496  TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKIN 555

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFA
Sbjct: 556  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 615

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKIHLANL+ GGVEKLS+DGR++FVEN++ EIFDSA+N +NG+RWWL 
Sbjct: 616  EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 675

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSEAL+SSSPH+V+SHLPIHQDGSCNGLQHYAALGR++ EAAAVNL+
Sbjct: 676  AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 735

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVH IMKRDS KD +  P ALLAK+LI QVDRKLVKQTVMTSVYGV
Sbjct: 736  AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 795

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            T+VGAREQIKRRLEEKG ITDDR LF+AACYAAKVTL ALGE+F+AAR+IMGWLGDCAK+
Sbjct: 796  TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 855

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG SVE+RKQRTAFPPNFV
Sbjct: 856  IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFV 915

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD MNQILR+KFV+LYNMPILE+LL
Sbjct: 916  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPILENLL 975

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ESF+TSYPTL+FP LP RG+FDL +V++
Sbjct: 976  ESFQTSYPTLSFPPLPERGNFDLEEVLE 1003


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  966 bits (2498), Expect = 0.0
 Identities = 463/569 (81%), Positives = 527/569 (92%), Gaps = 2/569 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDA+K V  K+MQKV+EALDTLG+
Sbjct: 283  PYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGS 342

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVNK++L+VVESIWA+GGN+AGLV+R D+PIPE   S+D+              KIN
Sbjct: 343  TKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKIN 402

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            +ERHSQRCDTELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 403  RERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 462

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLG+SGL WLKIHLANL+ GGVEKLS+DGR++FV+N++ +IFDSA+N +NGNRWWL 
Sbjct: 463  EGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLT 522

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSE+L+SSSPH+V+S+LPIHQDGSCNGLQHYAALGRDS EAAAVNL+
Sbjct: 523  AEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV 582

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVHNIMKRDS+KD AT+P+A LAKLLI QVDRKLVKQTVMTSVYGV
Sbjct: 583  AGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGV 642

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            T+VGAREQIKRRLEEKG ITDDR+LF+AACY AKVTLAALGELFQAAR IMGWLGDCAK+
Sbjct: 643  TFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKV 702

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDS-VEVRKQRTAFPPNF 1076
            IASENQPV+WTTPLGLPVVQPY+K++RH+IRTSLQVLALQREGDS VEVRKQRTAFPPNF
Sbjct: 703  IASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNF 762

Query: 1075 VHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESL 896
            VHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++MNQILR+KFV+LY+MP+LE+L
Sbjct: 763  VHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENL 822

Query: 895  LESFETSYPTLTFPALPNRGDFDLNKVVQ 809
             ES +TSYP+L FP LP RG+FDL +V++
Sbjct: 823  FESVQTSYPSLVFPPLPERGNFDLREVLK 851


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score =  966 bits (2498), Expect = 0.0
 Identities = 466/568 (82%), Positives = 515/568 (90%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PY PMLVPPKKW+GYDKGG+LFLPSY+MRTHGSRQQQ AV++VP KQMQKV+EALDTLGN
Sbjct: 309  PYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGN 368

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVN+R+L VVE IW +GGN+AGLV+RED+PIPE   SDD               KIN
Sbjct: 369  TKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKIN 428

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEF 
Sbjct: 429  QERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFE 488

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKIHLANLY GGVEKLS+DGR++FVEN+++EIFDSA N +NG RWWLK
Sbjct: 489  EGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLK 548

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINLSEAL S+SPHTV+SHLPIHQDGSCNGLQHYAALGRD+ EAAAVNL+
Sbjct: 549  AEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLV 608

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            A +KP+DVYSEIA RVH I++RDS KD AT+P ALLAK+L+ QVDRKLVKQTVMTSVYGV
Sbjct: 609  AAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGV 668

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKG ITDDRLLFSAACY AKVTL ALGELFQAAR IM WLGDCAKI
Sbjct: 669  TYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKI 728

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASE+QPV+WTTPLGLPVVQPY+KT+RH+I+TSLQ+LALQREG SV+VRKQRTAFPPNFV
Sbjct: 729  IASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFV 788

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHA DVD MN+ILR+KFV+LYNMPILE+LL
Sbjct: 789  HSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILENLL 848

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            E F+TSYPTL FP LP RG+FDL KV++
Sbjct: 849  EDFQTSYPTLQFPPLPERGNFDLQKVLR 876


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  963 bits (2490), Expect = 0.0
 Identities = 460/568 (80%), Positives = 517/568 (91%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPK+W+GYDKGG+LFLPSY+MRTHGSR+Q D ++ +  +QMQKV+EALD LG+
Sbjct: 400  PYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGS 459

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDAXXXXXXXXXXXXXXKIN 2153
            TKWR+NK++L+VVESIWA GGN+AGLV+REDVP+PE   S+D               K+N
Sbjct: 460  TKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLN 519

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHSQRCDTELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 520  QERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 579

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKIHLANLY GGVEKLSYDGRISFV+N+I +IFDSA N +NGNRWWL 
Sbjct: 580  EGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLT 639

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRD+ EAAAVNL+
Sbjct: 640  AEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLV 699

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVH+IMKRDS KD  T+P+ALLAK+L+ Q+DRKLVKQTVMTSVYGV
Sbjct: 700  AGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGV 759

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGDCAK+
Sbjct: 760  TYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKV 819

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLALQRE + V+VRKQRTAFPPNFV
Sbjct: 820  IASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFV 879

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAG+RFAGVHDSFWTHACDVD+MNQILR+ FV+LY+ PILE+LL
Sbjct: 880  HSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLL 939

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ESF+ +YP LTFP LP RGDFDL +V++
Sbjct: 940  ESFQAAYPELTFPPLPERGDFDLQEVLK 967


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  960 bits (2481), Expect = 0.0
 Identities = 460/568 (80%), Positives = 521/568 (91%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A+K+V    M+KV+EALDTLG+
Sbjct: 439  PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVNK++LSV+ESIW +GGN+AGLV+R DV IPE  LS+D               KIN
Sbjct: 499  TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            QERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFA
Sbjct: 559  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGLRWLKIHLANL+ GGVEKLS+DGR++FVEN++ EIFDSA+N +NG+RWWL 
Sbjct: 619  EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAACINL+EAL+SSSPH+V+SHLPIHQDGSCNGLQHYAALGR++ EAAAVNL+
Sbjct: 679  AEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEIA RVH IMKRDS KD +  P ALLAK+LI QVDRKLVKQTVMTSVYGV
Sbjct: 739  AGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            T+VGAREQIKRRLEEKG ITDDR LF+AACYAAKVTL ALGE+F+AAR+IMGWLGDCAK+
Sbjct: 799  TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IASENQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ VE+RKQRTAFPPNFV
Sbjct: 859  IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFV 918

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD MNQILR+KFV+LYNMP+LE+LL
Sbjct: 919  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLL 978

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            ESF+TSYPTL+FP+LP RG+FDL +V++
Sbjct: 979  ESFQTSYPTLSFPSLPERGNFDLEEVLE 1006


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  947 bits (2447), Expect = 0.0
 Identities = 451/567 (79%), Positives = 510/567 (89%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PY+PMLVPPKKW+GYDKGG+ FLPSY+MRTHGS +QQDA+K +  KQMQKV+EALD LG+
Sbjct: 403  PYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGS 462

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDAXXXXXXXXXXXXXXKINQ 2150
            TKWRVN+ +LSVVES+WA GGN AGLV+R+DVPIPE    D               KINQ
Sbjct: 463  TKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQ 522

Query: 2149 ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1970
            E HSQRCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAE
Sbjct: 523  ELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 582

Query: 1969 GRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKA 1790
            GRPLGKSGL WLKIHLANLY GGVEKLSYD R++FV++++  IFDSA N +NG+RWWL A
Sbjct: 583  GRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTA 642

Query: 1789 EDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIA 1610
            EDPFQCLAAC+NLSEAL+SS+PHTV+S+LPIHQDGSCNGLQHYAALGRD+ EAAAVNL+A
Sbjct: 643  EDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVA 702

Query: 1609 GDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVT 1430
            G+KPADVYSEIA RVH IM RD+ KD  T+P+A LAKLLI QVDRKLVKQTVMTSVYGVT
Sbjct: 703  GEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVT 762

Query: 1429 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1250
            Y+GAREQIKRRLEEKGLI+DDRL F A+CYAAKVTL+ALGE+F+AAR IMGWLGDCAK+I
Sbjct: 763  YIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVI 822

Query: 1249 ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 1070
            A +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQVLALQREG+ V+VRKQRTAFPPNFVH
Sbjct: 823  AKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVH 882

Query: 1069 SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLE 890
            SLDGSHMM+TA+ACRDAGLRFAGVHDSFWTHACDVDRMN ILR+KFV+LY+MP+LESLLE
Sbjct: 883  SLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLE 942

Query: 889  SFETSYPTLTFPALPNRGDFDLNKVVQ 809
             FET+YP LTFP+LP RGDFDL +V++
Sbjct: 943  GFETTYPGLTFPSLPGRGDFDLQEVLK 969


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  947 bits (2447), Expect = 0.0
 Identities = 451/567 (79%), Positives = 510/567 (89%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PY+PMLVPPKKW+GYDKGG+ FLPSY+MRTHGS +QQDA+K +  KQMQKV+EALD LG+
Sbjct: 403  PYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGS 462

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDAXXXXXXXXXXXXXXKINQ 2150
            TKWRVN+ +LSVVES+WA GGN AGLV+R+DVPIPE    D               KINQ
Sbjct: 463  TKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQ 522

Query: 2149 ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 1970
            E HSQRCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAE
Sbjct: 523  ELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 582

Query: 1969 GRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKA 1790
            GRPLGKSGL WLKIHLANLY GGVEKLSYD R++FV++++  IFDSA N +NG+RWWL A
Sbjct: 583  GRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTA 642

Query: 1789 EDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIA 1610
            EDPFQCLAAC+NLSEAL+SS+PHTV+S+LPIHQDGSCNGLQHYAALGRD+ EAAAVNL+A
Sbjct: 643  EDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVA 702

Query: 1609 GDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVT 1430
            G+KPADVYSEIA RVH IM RD+ KD  T+P+A LAKLLI QVDRKLVKQTVMTSVYGVT
Sbjct: 703  GEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVT 762

Query: 1429 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1250
            Y+GAREQIKRRLEEKGLI+DDRL F A+CYAAKVTL+ALGE+F+AAR IMGWLGDCAK+I
Sbjct: 763  YIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVI 822

Query: 1249 ASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 1070
            A +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQVLALQREG+ V+VRKQRTAFPPNFVH
Sbjct: 823  AKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVH 882

Query: 1069 SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLE 890
            SLDGSHMM+TA+ACRDAGLRFAGVHDSFWTHACDVDRMN ILR+KFV+LY+MP+LESLLE
Sbjct: 883  SLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLE 942

Query: 889  SFETSYPTLTFPALPNRGDFDLNKVVQ 809
             FET+YP LTFP+LP RGDFDL +V++
Sbjct: 943  GFETTYPGLTFPSLPGRGDFDLQEVLK 969


>emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
          Length = 557

 Score =  942 bits (2434), Expect = 0.0
 Identities = 462/554 (83%), Positives = 505/554 (91%), Gaps = 1/554 (0%)
 Frame = -3

Query: 2467 YDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGNTKWRVNKRILSVVE 2288
            YDKGGYLFLPSYLMRTHGSR+QQDAV+ VPTKQMQ+VYEALDTLG+TKWRVNKRIL+VVE
Sbjct: 1    YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 60

Query: 2287 SIWAAGGNLAGLVNREDVPIPELL-SDDAXXXXXXXXXXXXXXKINQERHSQRCDTELKL 2111
            SIWA GGN+AGLV+R+DVPIPEL  SDD               KINQE HSQRCDTELKL
Sbjct: 61   SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 120

Query: 2110 SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 1931
            SVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK
Sbjct: 121  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 180

Query: 1930 IHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINL 1751
            IHLA+LY GGVEKL YD R++FVEN+I +I DSA+N LNGNRWWL AEDPFQCLAACINL
Sbjct: 181  IHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINL 240

Query: 1750 SEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAE 1571
            SEAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVY+EIA 
Sbjct: 241  SEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIAL 300

Query: 1570 RVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 1391
            RV +I++ DS KD A DP+ALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE
Sbjct: 301  RVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 360

Query: 1390 EKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPL 1211
            EKGLI DDRLLF+A+CY   VTLAALGELFQAAR  M WLGDCAK+IA ENQPVRWTTPL
Sbjct: 361  EKGLIDDDRLLFTASCY---VTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPL 417

Query: 1210 GLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIA 1031
            GLPVVQPYFKTQRHVIRTSLQ+LALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+A
Sbjct: 418  GLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVA 477

Query: 1030 CRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPA 851
            CRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++PILE LLE+F+ SYP LTFP 
Sbjct: 478  CRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPP 537

Query: 850  LPNRGDFDLNKVVQ 809
            LP RGDF+L +V++
Sbjct: 538  LPKRGDFNLREVLE 551


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score =  930 bits (2404), Expect = 0.0
 Identities = 442/568 (77%), Positives = 509/568 (89%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPK+W+GYDKGGYLFLPSY+MRTHGS++QQDA++ + +K   +V+EALDTLGN
Sbjct: 420  PYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGN 479

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVN++IL VVE +WA GGN+AGLVNREDVPIPE   S+D               KIN
Sbjct: 480  TKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKIN 539

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            +ERHS RCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFA
Sbjct: 540  RERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFA 599

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGL WLKIHLANLY GGVEKLS+DGR++FVEN++  I DSA+N ++G RWWLK
Sbjct: 600  EGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDNIMDSAENPIHGQRWWLK 659

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAAC+ L++AL+S SP++V+SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL+
Sbjct: 660  AEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV 719

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEI+ RVH IMK+DS KD  ++P+A LAK+LI QVDRKLVKQTVMTSVYGV
Sbjct: 720  AGEKPADVYSEISLRVHEIMKKDSSKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGV 779

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKG+I+D+R+LFSAACYAAKVTLAALGE+F+AARAIM WLGDCAKI
Sbjct: 780  TYVGAREQIKRRLEEKGVISDERMLFSAACYAAKVTLAALGEIFEAARAIMSWLGDCAKI 839

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IAS+N PVRW TPLGLPVVQPY +++RH+IRTSLQVLALQREG++V+VRKQRTAFPPNFV
Sbjct: 840  IASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFV 899

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDG+HMMMTA+ACR+AGL FAGVHDS+WTHACDVD MN+ILR+KFV+LYN PILE LL
Sbjct: 900  HSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLL 959

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            +SF+ SYP L FP +P RGDFDL +V++
Sbjct: 960  QSFQESYPNLVFPPVPKRGDFDLKEVLK 987


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  928 bits (2399), Expect = 0.0
 Identities = 441/568 (77%), Positives = 507/568 (89%), Gaps = 1/568 (0%)
 Frame = -3

Query: 2509 PYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDTLGN 2330
            PYVPMLVPPK+W+GYDKGGYLFLPSY+MRTHGS++QQDA+K +  K   +V+EALDTLGN
Sbjct: 420  PYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGN 479

Query: 2329 TKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDAXXXXXXXXXXXXXXKIN 2153
            TKWRVN+ IL VVE +WA GGN+AGLVNREDVPIPE   S+D               KIN
Sbjct: 480  TKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKIN 539

Query: 2152 QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1973
            +ERHS RCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFA
Sbjct: 540  RERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFA 599

Query: 1972 EGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWWLK 1793
            EGRPLGKSGL WLKIHLANLY GGVEKLS+D R++FVEN++ +I DSA+N ++G RWWLK
Sbjct: 600  EGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLK 659

Query: 1792 AEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLI 1613
            AEDPFQCLAAC+ L++AL+S SP++V+SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL+
Sbjct: 660  AEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV 719

Query: 1612 AGDKPADVYSEIAERVHNIMKRDSEKDAATDPSALLAKLLIGQVDRKLVKQTVMTSVYGV 1433
            AG+KPADVYSEI+ RVH IMK+DS KD  ++P+A LAK+LI QVDRKLVKQTVMTSVYGV
Sbjct: 720  AGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGV 779

Query: 1432 TYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKI 1253
            TYVGAREQIKRRLEEKG+ITD+R+LF+AACY+AKVTLAALGE+F+AARAIM WLGDCAKI
Sbjct: 780  TYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKI 839

Query: 1252 IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 1073
            IAS+N PVRW TPLGLPVVQPY +++RH+IRTSLQVLALQREG++V+VRKQRTAFPPNFV
Sbjct: 840  IASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFV 899

Query: 1072 HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILESLL 893
            HSLDG+HMMMTA+ACR+AGL FAGVHDS+WTHACDVD MN+ILR+KFV+LYN PILE LL
Sbjct: 900  HSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLL 959

Query: 892  ESFETSYPTLTFPALPNRGDFDLNKVVQ 809
            +SF+ SYP L FP +P RGDFDL +V++
Sbjct: 960  QSFQESYPNLVFPPVPKRGDFDLKEVLK 987