BLASTX nr result
ID: Rehmannia23_contig00005356
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00005356
(1956 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607... 471 e-130
gb|AAY99339.1| pol-polyprotein [Silene latifolia] 449 e-123
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 449 e-123
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 449 e-123
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana] 441 e-121
gb|AFU25705.1| gag-pol precursor [Castanea mollissima] 431 e-118
emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis] 425 e-116
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc... 422 e-115
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group... 422 e-115
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623... 417 e-114
gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subc... 417 e-114
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780... 416 e-113
ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group] g... 414 e-113
gb|ABG22552.1| retrotransposon protein, putative, unclassified, ... 414 e-113
emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group] 413 e-112
emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa Japonica Group] 412 e-112
gb|ABA97396.1| retrotransposon protein, putative, Ty3-gypsy subc... 412 e-112
gb|AAX96872.1| retrotransposon protein, putative, Ty3-gypsy sub-... 412 e-112
gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group] 412 e-112
gb|AAS79740.1| putative polyprotein [Oryza sativa Japonica Group] 412 e-112
>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
Length = 1866
Score = 471 bits (1211), Expect = e-130
Identities = 240/487 (49%), Positives = 329/487 (67%), Gaps = 14/487 (2%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G FCY VMPFGLKNAGATYQRLV+K+F +GR MEVYVDDM+ KS + DHV L ETF
Sbjct: 975 GLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGRTMEVYVDDMITKSREPRDHVKHLEETF 1034
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
+ LR+Y+MKLNP+KCAFGV SGKFLGY+V+ +GIEAN K+RA+ EM PR K+VQ LT
Sbjct: 1035 ELLRRYKMKLNPEKCAFGVSSGKFLGYLVSHRGIEANLEKIRAVIEMRSPRTVKEVQSLT 1094
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G+LAALNRFISR ++ PFF++++K KK W EC++AF LK YLA LL+ P G+
Sbjct: 1095 GKLAALNRFISRATDKCHPFFQIIKKGKKMEWTPECEEAFGQLKEYLARAPLLSTPREGD 1154
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L LYL++ ++ S+VL+REE Q PVYY SK L +AE RY +EK LAL+ AR+LR
Sbjct: 1155 QLLLYLAISKRATSSVLVREEEGKQHPVYYTSKALVDAETRYPPMEKWALALITAARKLR 1214
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFV-- 894
PYF +H+++V T+ PLR V+ KP+ +GRLVKW++ELSE+D+ + R A KAQAL DF+
Sbjct: 1215 PYFQAHQIVVMTDQPLRQVLQKPDASGRLVKWSVELSEFDLSYRPRGATKAQALVDFMVD 1274
Query: 895 ----------QESTRDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKL 1044
++ + S+G W++ VDGS G GAG+V+ SP+G E +AV+ EF+L
Sbjct: 1275 CVEPGEEVQEEQPEEQEDSKGTWLVMVDGSCSEQGSGAGVVIRSPEGTEITYAVKFEFQL 1334
Query: 1045 SNNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALE 1224
+NN+AEYEAFI G+ +A + A R+ I DSQLV Q+ +F+ R E+M Y++ + +
Sbjct: 1335 TNNQAEYEAFITGLGLAHALRAERVEIRADSQLVCNQLNDQFQARGEKMGLYLKKAKQMV 1394
Query: 1225 GRVKEIKICQVPREENGRADFLAKLASSALENQAKHITLLVAKETAL--GLEVGEIEEKE 1398
+ +++ Q+ R EN RAD LA++A+ A K + L V ++ EV + E
Sbjct: 1395 RLFQAVEVKQISRNENFRADMLARMAAIADPKLPKSVPLEVRTSPSIEEEAEVMRVSIGE 1454
Query: 1399 DWRSAIK 1419
W I+
Sbjct: 1455 SWMDPIR 1461
>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
Length = 1307
Score = 449 bits (1156), Expect = e-123
Identities = 237/478 (49%), Positives = 325/478 (67%), Gaps = 6/478 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GT+ Y +M FGLKNAGATY RLVDK+F +Q GRN+E YVDD +VKS +H+ DL+ETF
Sbjct: 426 GTYMYKMMSFGLKNAGATYTRLVDKVFQDQKGRNIEAYVDDAIVKSKSDSEHLADLSETF 485
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
+LRKY+MKLNP KC FGVR+GKFLG +V+ +GI+ANP KV+AI ++ PR+ K+V LT
Sbjct: 486 CSLRKYKMKLNPMKCNFGVRAGKFLGVLVSARGIDANPEKVQAILDLLEPRNRKEVMMLT 545
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AAL RFISR ++S PFFKVL+ K F W EE AF LK +L L L++P+ GE
Sbjct: 546 GRMAALARFISRSTDKSTPFFKVLKGNKDFSWGEEQSTAFRQLKAHLITLPTLSRPMLGE 605
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
LYLY++V VS V+IREE Q P+Y++S L AE Y IEKA A+VV AR+L+
Sbjct: 606 TLYLYIAVTSATVSAVIIREEDKQQHPIYFISHTLLAAETNYPLIEKAAFAVVVAARKLK 665
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
PYF +H V V T+ PL + E +GRL+KWA+ELS + I ++ R +IK QALADF+ E
Sbjct: 666 PYFNAHPVTVLTDQPLEKALENFEKSGRLIKWAVELSGFGIQYKPRPSIKGQALADFLAE 725
Query: 901 ST-RDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEYEAFI 1077
T +++ + G W +Y DGS ++ GAGI++ISP G E ++A++ F SNNE+EYEA I
Sbjct: 726 CTYQEEPNPGVWEVYTDGSSTTNSSGAGILIISPNGDEFEYALKFTFSASNNESEYEAVI 785
Query: 1078 RGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIKICQV 1257
G+++A GA +V+ DS LV Q+ GE+E R++ M RY+E +A ++K +I +
Sbjct: 786 TGVELARAAGAEHIVLKTDSLLVTNQIRGEYEARDDGMVRYLERVKADTAKLKSFQIQCI 845
Query: 1258 PREENGRADFLAKLASSALENQAKHITLLVAKETALGLE-----VGEIEEKEDWRSAI 1416
PR EN RAD L+KL SS ++N ++ T+LV A + VG+IE + W + I
Sbjct: 846 PRSENNRADTLSKLTSSTIKNVSR--TVLVDIRNAKSITETVGMVGDIEAETTWMTPI 901
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 449 bits (1156), Expect = e-123
Identities = 233/475 (49%), Positives = 320/475 (67%), Gaps = 4/475 (0%)
Frame = +1
Query: 7 FCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETFDT 186
F Y VMPFGLKNAGATYQRL+D +F + +GRN+EVYVDD++VKS HV DL E F
Sbjct: 1019 FFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSDLKEVFQA 1078
Query: 187 LRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLTGR 366
LR+YRM+LNP+KCAFGV GKFLG+M+T +GIEANP K +AI EM P+ K++Q L R
Sbjct: 1079 LRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKGLKEIQRLVSR 1138
Query: 367 LAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGEPL 546
L +L+RF+ +LAER+ P K+L+K KF W +EC++ F+ LK +LA ++ KP EP+
Sbjct: 1139 LTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECEQNFQQLKAFLASPPVIQKPNAREPI 1198
Query: 547 YLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLRPY 726
+YL+V + VS+ L++E ++ +RPVY+VS+VL +AE RY +EK ALV+TARR+R Y
Sbjct: 1199 VVYLAVSNEAVSSALVQEIKAEERPVYFVSRVLHDAETRYQMVEKVAFALVITARRMRMY 1258
Query: 727 FLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQEST 906
F +HKVIVRTN P+ +++KP++AGR++ WA+ELSE+ I ++ R AIK+QALADF E T
Sbjct: 1259 FQNHKVIVRTNYPIMKILTKPDLAGRMIGWAVELSEFHIEYQPRGAIKSQALADFTAELT 1318
Query: 907 RD-DSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEYEAFIRG 1083
W +YVDGS S GAG+VL P I + A++ EFK SNN+AEYEA I G
Sbjct: 1319 PYLTERTPRWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAMKFEFKTSNNQAEYEAIIAG 1378
Query: 1084 MQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIKICQVPR 1263
+ +AIE+ + DS+LV Q+ GE+EVRE +++Y + L R KEI V R
Sbjct: 1379 LHLAIELEVTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNRFKEISFQHVRR 1438
Query: 1264 EENGRADFLAKLAS---SALENQAKHITLLVAKETALGLEVGEIEEKEDWRSAIK 1419
E N RAD L++LA+ A H+TL AK + E + + +W + IK
Sbjct: 1439 ENNTRADALSRLATLKKKGAHRSAIHVTL--AKPSVGTEECMATDTQPNWMTPIK 1491
>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
Length = 1103
Score = 449 bits (1154), Expect = e-123
Identities = 245/503 (48%), Positives = 322/503 (64%), Gaps = 21/503 (4%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G +CY VMPFGLKNAGATYQRLV+KMF LG+ MEVY+DDMLVKS+K DHV L E F
Sbjct: 137 GIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECF 196
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
L KY+MKLNP KC FGV SG+FLGY+VTE+GIEAN ++ A M PR+ K+VQ LT
Sbjct: 197 GILNKYQMKLNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRLT 256
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AALNRFISR ++SLPF+++L+ K F+WDE+C++AF LK YL +L+KP E
Sbjct: 257 GRIAALNRFISRSTDKSLPFYQILKGNKGFLWDEKCEEAFGQLKAYLTTPPILSKPEVDE 316
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
LYLY+SV VS VL+RE+R Q+P+YYVSK + + E RY +EK LA+V +AR+LR
Sbjct: 317 KLYLYVSVSNHAVSGVLVREDRGEQKPIYYVSKSMTDPETRYTMMEKLALAVVTSARKLR 376
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
PYF SH V V TN PLR ++ P +GRL KWA+ELSEYDI F++R ++KAQ LADF+ E
Sbjct: 377 PYFQSHPVQVLTNQPLRTILHSPSQSGRLAKWAVELSEYDIEFKSRISMKAQVLADFLTE 436
Query: 901 ----STRDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEYE 1068
T + W ++VDGS G GI L SP + + RL F SNNEAEYE
Sbjct: 437 LPIPGTIERPENQTWKLHVDGSSTKQGSVVGIKLESPTSEILEQSFRLLFDASNNEAEYE 496
Query: 1069 AFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIKI 1248
A I G+++A +GA ++ Y DSQLV Q G++E ++ RM+ Y+E + L + ++
Sbjct: 497 ALIAGLRLAQGVGAKEILAYCDSQLVVNQFNGDYEAKDSRMEAYLEVAKDLSKNFSKFEL 556
Query: 1249 CQVPREENGRADFLAKLAS---------------SALENQAKHITLLVAKETALGLEVGE 1383
++ R EN AD LA LAS S Q TL++ + A + GE
Sbjct: 557 IRILRGENTTADALAALASTSDPGLKRVIPVECISERSIQDNKETLVITRSRAAARDRGE 616
Query: 1384 --IEEKEDWRSAIKGNTKS*RNP 1446
IE + R +G+ S + P
Sbjct: 617 PDIEPPSNKRRKSRGSNTSNKGP 639
>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
Length = 1838
Score = 441 bits (1135), Expect = e-121
Identities = 222/441 (50%), Positives = 302/441 (68%), Gaps = 7/441 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GT+CY VM FGLKNAGATYQR V+KM +Q+GR +EVY+DDMLVKS+K DHV L++ F
Sbjct: 940 GTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCF 999
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
D L Y MKLNP KC FGV SG+FLGY+VT++GIEANP ++RAI E+ PR+A++VQ LT
Sbjct: 1000 DVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLT 1059
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AALNRFISR ++ LPF+ +L++ +F WD++ ++AFE LK+YL+ +L KP GE
Sbjct: 1060 GRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGE 1119
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
LYLY++V + VS+VL+RE+R QRP++Y SK L AE RY IEKA LA+V +AR+LR
Sbjct: 1120 TLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLR 1179
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
PYF SH + V T+ PLR + P +GR+ KWA+ELSEYDI F R A+K+Q LADF+ E
Sbjct: 1180 PYFQSHTIAVLTDQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIE 1239
Query: 901 STRDDSSEGA-------WVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEA 1059
+ W +YVDGS + G G GI L+SP + + RL F +NN A
Sbjct: 1240 LPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVA 1299
Query: 1060 EYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKE 1239
EYE I G+++A M + + DSQL+ Q+ GE+E + E+M Y++ + + +
Sbjct: 1300 EYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFEN 1359
Query: 1240 IKICQVPREENGRADFLAKLA 1302
K+ ++PR +N AD LA LA
Sbjct: 1360 FKLSKIPRGDNAPADALAALA 1380
>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
Length = 1106
Score = 431 bits (1108), Expect = e-118
Identities = 219/451 (48%), Positives = 299/451 (66%), Gaps = 15/451 (3%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G + Y VMPFGLKNAG+TYQR+V +MF QLGR ME Y+DDM++KS K DH+ DL ETF
Sbjct: 209 GNYHYRVMPFGLKNAGSTYQRMVTRMFDSQLGRTMEAYIDDMVIKSKKVGDHLKDLHETF 268
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
LRK++++LN KC+FGV SGKFLGYM+T +GIE NP +++AI E+ PPR+ K+VQ L
Sbjct: 269 SVLRKHKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQKLA 328
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G A LNRFISR A+R PF+++L K K F+W +EC AFEDL+ YLA+ +L++P E
Sbjct: 329 GMFAVLNRFISRSADRCRPFYRLLHKWKDFLWTDECNLAFEDLRQYLANPLILSRPEKKE 388
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
LY YL+V VS VLIR + VQ+P+YY+SK L+ AE RY +EKA LA+V R+L
Sbjct: 389 VLYAYLAVMNYAVSLVLIRNDDGVQKPIYYISKSLQEAERRYLPLEKALLAVVHATRKLP 448
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YF +H ++V T LPL+ +M K + GR+ KW +L YD+ + R+AIK Q L DFV E
Sbjct: 449 HYFQAHTIVVLTQLPLQAIMRKLDYTGRVAKWGTKLGAYDVKYMPRTAIKGQDLVDFVAE 508
Query: 901 STRDDSSE---------------GAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLE 1035
T D+ + W + DG+ G G G+VLI+P+ + + ++RL
Sbjct: 509 FTESDTKQEDAMMTVMTIGLGNVPLWEVCTDGASNRKGAGIGVVLITPEKLVMEKSLRLG 568
Query: 1036 FKLSNNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYR 1215
F +NNEAEYEA + G QM +G + +Y DS+LV Q+ GEFEVR+ERMK+Y+E +
Sbjct: 569 FIATNNEAEYEALLAGAQMVRHLGGEVVELYCDSRLVFGQINGEFEVRDERMKKYLERVK 628
Query: 1216 ALEGRVKEIKICQVPREENGRADFLAKLASS 1308
+ K ++ Q+PR +N AD LA LA+S
Sbjct: 629 GVLRLFKSFQVRQIPRGQNAHADLLAMLATS 659
>emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
Length = 2097
Score = 425 bits (1092), Expect = e-116
Identities = 212/443 (47%), Positives = 300/443 (67%), Gaps = 7/443 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GT+CY+ MPFGLKNAGAT+QRL+ K F Q+GRN+E YVDD++VK+ A DH+ DL ETF
Sbjct: 1187 GTYCYIKMPFGLKNAGATFQRLMQKTFSPQIGRNLEAYVDDLVVKNTNAGDHIPDLQETF 1246
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
+ LR++ +KLNP+KC FGV +GK LG++V+ +GIEANP K+ AI +M PP K+VQ LT
Sbjct: 1247 NNLRRHNLKLNPEKCVFGVSAGKLLGFLVSARGIEANPAKIAAIDQMRPPTTKKEVQKLT 1306
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G +AAL+RFI+RL E+ LPFFK+LRK F W +E AFE+LK YL +L P PGE
Sbjct: 1307 GCMAALSRFIARLGEKGLPFFKLLRKHGSFEWTKEANDAFEELKKYLTSTPVLVSPRPGE 1366
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L +Y++ Q VS VL+ E ++QRPVYYVS+VL + RY ++K L++++R+LR
Sbjct: 1367 TLLIYVAATLQTVSGVLVVERDNIQRPVYYVSEVLHGPKERYPHVQKLLYGLLMSSRKLR 1426
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YF +HKV+V T PL V+ E +GR+ KWA+EL +D+ F +R+AIK+QA+A+F+ E
Sbjct: 1427 HYFQAHKVVVPTGYPLGQVLGNRESSGRIAKWAVELGAFDLHFISRTAIKSQAIAEFIAE 1486
Query: 901 STRDDSSEG-------AWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEA 1059
T + ++G W +Y DGS+ G GAG+VLISP G +A++L F +NN A
Sbjct: 1487 WTNPEPTQGPEYEHHDEWTLYFDGSLMLQGSGAGVVLISPTGEHIKYAIQLNFPATNNVA 1546
Query: 1060 EYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKE 1239
EYE + G+++A +G R+++ DSQLV QV E++ +M Y+ R LE
Sbjct: 1547 EYEGLLAGLRVARSLGIRRLLVKGDSQLVANQVGKEYQCSSTKMSSYLAEVRKLEKHFFG 1606
Query: 1240 IKICQVPREENGRADFLAKLASS 1308
+I +PR+EN D LA++AS+
Sbjct: 1607 FQIQHIPRKENFLVDQLARMAST 1629
>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1980
Score = 422 bits (1084), Expect = e-115
Identities = 218/479 (45%), Positives = 317/479 (66%), Gaps = 7/479 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GT+C++ MPFGLKNAGAT+ RL+ K+ +QLGRN+E YVDD++VKS +A H DL ETF
Sbjct: 1103 GTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKSKQAFTHGKDLQETF 1162
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
+ LRK +KLNP+KC FGVR+GK LG++V+++GIEANP K+ AI +M PP++ ++VQ LT
Sbjct: 1163 ENLRKCSVKLNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLT 1222
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+A+L+RF+S+ AE+ LPFFK LR A F W ECQ+AF+DLK YL ++ L P G+
Sbjct: 1223 GRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQ 1282
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
PL +Y++ VS VL++EE + Q PVY+VS+ L+ + RY+E+EK A+V+ +R+LR
Sbjct: 1283 PLLMYVAATPATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLR 1342
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YFLSH + + + P+ V++ EVAGR+ KWA+EL +D+ + +R+AIK+Q LADFV E
Sbjct: 1343 HYFLSHDITIPSAYPIGEVLTNKEVAGRIAKWAMELLPFDLKYTSRTAIKSQVLADFVAE 1402
Query: 901 ST-----RDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEY 1065
T + + E W+++ DG+ ++G GA V+ +P ++V+L F +NN AEY
Sbjct: 1403 WTPNEVEQQEEVEKPWIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQLAFPSTNNTAEY 1462
Query: 1066 EAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIK 1245
E + M+ A +GA R+++ DS+LV FE +E+ M +Y+E R E I
Sbjct: 1463 EGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEKTMAKYLEEARLNEKHFLGIT 1522
Query: 1246 ICQVPREENGRADFLAKLASSA--LENQAKHITLLVAKETALGLEVGEIEEKEDWRSAI 1416
+ + REENG AD LAK A++ LEN I + E EV I+ + DWR I
Sbjct: 1523 VKAITREENGEADELAKAAATGQPLENSFFDIITQPSYEKK---EVACIQREGDWREPI 1578
>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1459
Score = 422 bits (1084), Expect = e-115
Identities = 217/477 (45%), Positives = 310/477 (64%), Gaps = 5/477 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GT+CY+ MPFGLKNAGAT+ RL+ K+ QLGRN+E YVDD++VKS KA H DL ETF
Sbjct: 581 GTYCYIRMPFGLKNAGATFARLICKVLANQLGRNVEAYVDDIVVKSKKAFTHGKDLQETF 640
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
+ LRK+ +KLNP+KC FGVR GK LG++V+++GIEANP K+ AI++M PP++ +++Q LT
Sbjct: 641 ENLRKFSVKLNPEKCMFGVRVGKLLGFLVSKRGIEANPDKIAAIQQMEPPKNTREMQRLT 700
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+A+L+RF+S+ AER LPFFK LR F W+EECQKAF+DLK+YL ++ L+ P GE
Sbjct: 701 GRMASLSRFLSKSAERGLPFFKTLRAVNNFKWNEECQKAFDDLKDYLHNMPTLSSPQKGE 760
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
PL LY++ VS VL++E+ + Q PVY+VS+ L+ + RY E+EK A+V+ +R+LR
Sbjct: 761 PLLLYVAATPVTVSAVLVQEQGNKQMPVYFVSEALQGPKTRYIEVEKMIYAIVMASRKLR 820
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YFLSH + + + P+ V+S E+AGR+ KWA+EL +D+ + +R+AIK+Q LA FV E
Sbjct: 821 HYFLSHDITIPSTYPIGEVLSNKEIAGRIAKWAMELLPFDLKYTSRTAIKSQVLAKFVVE 880
Query: 901 ST-----RDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEY 1065
T + + E W ++ DG+ ++G GA V+ +P ++ RL F +NN AEY
Sbjct: 881 WTPTELEKKEEEEKPWTVFSDGACNATGAGAAAVVKTPMKQTLKYSARLNFPSTNNTAEY 940
Query: 1066 EAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIK 1245
E + M+ + +GA R++I DS+LV FE REE M +Y+E R E I
Sbjct: 941 EGVLLAMRKSRALGARRLIIKTDSKLVAGHFSKTFEAREEIMTKYLEEARLNERHFLGIT 1000
Query: 1246 ICQVPREENGRADFLAKLASSALENQAKHITLLVAKETALGLEVGEIEEKEDWRSAI 1416
+ + REENG AD L K A++ + +L + EE DWR I
Sbjct: 1001 VKAITREENGEADELTKAAAAGQPLENSFFEILEHPSYDKKEVICIQEEGLDWRDPI 1057
>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
Length = 1407
Score = 417 bits (1072), Expect = e-114
Identities = 211/377 (55%), Positives = 270/377 (71%), Gaps = 12/377 (3%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G FCY VMPFGLKNAGATYQRLV+K+F +G+ MEVYVDDM+ KS +HV L ETF
Sbjct: 988 GLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKVPKEHVRHLEETF 1047
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
+ LRKY+MKLNP+KCAFGV SGKFLG+MV+ +GIEANP K++AI +M PR+ K++Q LT
Sbjct: 1048 ELLRKYKMKLNPEKCAFGVESGKFLGFMVSHRGIEANPEKIQAIVQMTSPRNLKEMQSLT 1107
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GRLAAL+RFIS+ ++ PFF+V+R+ KK W C++AF +LK YL LL+ P G+
Sbjct: 1108 GRLAALSRFISKATDKCQPFFQVMRRGKKTEWTPGCEEAFRNLKQYLQQAPLLSTPRDGD 1167
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L LYL+V ++ S+VL+REE VQ P+YY SK L +AE RY +EK LALVV AR+LR
Sbjct: 1168 KLNLYLAVSDRAASSVLVREEEGVQYPIYYTSKALLDAETRYPPLEKWALALVVAARKLR 1227
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
PYF + V V TN PLR ++ KP+ +GRLVKWA+ELSE+D+ ++ R+AIKAQA+ADFV E
Sbjct: 1228 PYFQAFPVSVITNQPLRQILHKPDASGRLVKWAVELSEFDMDYKPRAAIKAQAMADFVAE 1287
Query: 901 STR------------DDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKL 1044
D W I VDGS G G GAGIVL P+G E +AV+LEF
Sbjct: 1288 FAEPEVCLDQQGADIGDDETQVWQISVDGSSGERGSGAGIVLEGPEGEEISYAVKLEFAA 1347
Query: 1045 SNNEAEYEAFIRGMQMA 1095
+NN+AEYEA I G+++A
Sbjct: 1348 TNNQAEYEALIAGLELA 1364
>gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1767
Score = 417 bits (1072), Expect = e-114
Identities = 223/440 (50%), Positives = 294/440 (66%), Gaps = 5/440 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GTFC++ MPFGL+NAGAT+ RLV K+ G+QLGRN+E YVDD++VKS KA DH DL ETF
Sbjct: 887 GTFCHLRMPFGLRNAGATFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAFDLQETF 946
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
D+LR +KLNP+KC FGVR+GK LG++V+++GIEANP K+ AI++M PP +VQ LT
Sbjct: 947 DSLRAAGIKLNPEKCVFGVRAGKLLGFLVSDRGIEANPEKIDAIQQMKPPSSVHEVQKLT 1006
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AAL+RF+S AER LPFFK LR A KF W ECQ AF++LK YL L P PG
Sbjct: 1007 GRIAALSRFLSTAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGS 1066
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L LYL+ VS L++E S Q+PVY+VS+ L+ A+ RY E+EK ALV+ +R+L+
Sbjct: 1067 ELLLYLAASSVAVSAALVQETESGQKPVYFVSEALQGAKTRYIEMEKLSYALVMASRKLK 1126
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YF +HKVIV + L ++ EV G+L KWA ELS +D+ F RSAIK+Q LADFV E
Sbjct: 1127 HYFQAHKVIVPSQYSLGEILRGKEVTGQLSKWAAELSPFDLHFIARSAIKSQVLADFVAE 1186
Query: 901 ST-----RDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEY 1065
T + + WV+ DGS G VL SP G+ +A RL+F +NN AEY
Sbjct: 1187 WTPVLAPDPEPDDQFWVMCSDGS-----AGVAAVLFSPNGVSIWYAARLQFDTTNNAAEY 1241
Query: 1066 EAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIK 1245
EA + G++ A +G R++I DS+LV V FE +EE MKRY+EA ++E I
Sbjct: 1242 EAVLLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEAVWSMEKCFTGIT 1301
Query: 1246 ICQVPREENGRADFLAKLAS 1305
+ +PR++N AD LAK A+
Sbjct: 1302 VEHLPRDQNEEADALAKSAA 1321
>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 416 bits (1068), Expect = e-113
Identities = 235/493 (47%), Positives = 308/493 (62%), Gaps = 17/493 (3%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GT+CY MP GLKNAGAT+ R++ K+ G QL RN+ YVDD++V S + DH+ DL ETF
Sbjct: 993 GTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETF 1052
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
LR +KLNP+KC FGV GK LGY+++ +GI ANP K +AI MA P + K+VQ LT
Sbjct: 1053 VNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLT 1112
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AALNRFISR AERSLPFFKVLR+ K W E +AF LKNY+A L+T P P
Sbjct: 1113 GRIAALNRFISRSAERSLPFFKVLREGKT-EWGPEQSEAFRQLKNYIATNLLVTVPEPDT 1171
Query: 541 PLYLYLSVGEQGVSTVLIRE----ERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTA 708
PL LY++ E VS VL+ E + +VQRPVYYVS+ L A+L Y EIEK A++ +
Sbjct: 1172 PLLLYVAASEHAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNYTEIEKIAYAVLCAS 1231
Query: 709 RRLRPYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALAD 888
R+L+ YF SH++ V T+ PL +++ E +GR+ KWA ELS++DI + R++IK+QALAD
Sbjct: 1232 RKLKHYFQSHEIKVPTSQPLGDILRNKEASGRIGKWAAELSQFDITYVPRTSIKSQALAD 1291
Query: 889 FVQESTRDDSSE-----GAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNN 1053
F+ + T + +E W +Y DG+ G +G GA VLI+P G++ FA+RLEFK +NN
Sbjct: 1292 FMADWTPSNKNEEKVIDQPWTLYTDGAWGQAGAGAAAVLIAPSGLKLKFAIRLEFKATNN 1351
Query: 1054 EAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRV 1233
AEYE I G+ A GA +VI DSQ+V QV E+ + RY+ R LE R
Sbjct: 1352 IAEYEGLILGLNKAKASGAKTLVIKTDSQVVAGQVEKEYLAHNPELARYLAVVRGLERRF 1411
Query: 1234 KEIKICQVPREENGRADFLAKLASSAL---ENQAKHITLLVAKET-ALGLEVGEIEEKED 1401
K + +PR EN AD LAK A++ E I A ET + E ED
Sbjct: 1412 KGFTLQYIPRAENYEADELAKAAANNTPLPEGTFHQIVTTPATETLPKAFRSVLLTESED 1471
Query: 1402 WRSAI----KGNT 1428
WR AI KG T
Sbjct: 1472 WRQAIADCLKGKT 1484
>ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group]
gi|255680267|dbj|BAF28648.2| Os11g0617500, partial [Oryza
sativa Japonica Group]
Length = 627
Score = 414 bits (1065), Expect = e-113
Identities = 219/432 (50%), Positives = 286/432 (66%), Gaps = 5/432 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GTFC++ MPFGL+NAGAT+ RLV K+ +QLGRN+E YVDD++VKS KA DH DL ETF
Sbjct: 178 GTFCHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDVVVKSRKAFDHASDLQETF 237
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
D LR KLNP+KC FGVR+GK LG++V+E+GIEANP K+ AI++M PP ++VQ L
Sbjct: 238 DNLRAAGTKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPLSVREVQKLA 297
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AALNRF+S+ AER LPFFK LR +KF W ECQ AF +LK YL L PG
Sbjct: 298 GRIAALNRFLSKAAERGLPFFKTLRGVEKFHWTPECQAAFGELKQYLQSPPALISLAPGS 357
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L LYL+ VS L++E S Q+PVY++SK L+ A+ RY E+EK ALV+ + +L+
Sbjct: 358 ELLLYLAASPVAVSAALVQEIDSGQKPVYFISKALQGAKTRYIEMEKLAYALVMASCKLK 417
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YF +HKVIV + PL ++ EV GRL KWA ELS +D+ F R+AIK+Q LADFV E
Sbjct: 418 HYFQTHKVIVPSQYPLGEILWGKEVTGRLSKWAAELSPFDLHFVARTAIKSQVLADFVAE 477
Query: 901 ST-----RDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEY 1065
T + + WV+Y DGS G G VLISP G+ +A RL+F +NN AEY
Sbjct: 478 WTPALAPEPEPVKQPWVMYSDGSWSHKGAGIAAVLISPSGVPIRYAARLQFDTTNNAAEY 537
Query: 1066 EAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIK 1245
EA + G++ A +G R++I DS+LV V FE +EE MKRY+E R++E I
Sbjct: 538 EAILLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEVVRSMEKCFTGIT 597
Query: 1246 ICQVPREENGRA 1281
+ +PR +N A
Sbjct: 598 VEHLPRGQNEEA 609
>gb|ABG22552.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 612
Score = 414 bits (1065), Expect = e-113
Identities = 219/432 (50%), Positives = 286/432 (66%), Gaps = 5/432 (1%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GTFC++ MPFGL+NAGAT+ RLV K+ +QLGRN+E YVDD++VKS KA DH DL ETF
Sbjct: 163 GTFCHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDVVVKSRKAFDHASDLQETF 222
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
D LR KLNP+KC FGVR+GK LG++V+E+GIEANP K+ AI++M PP ++VQ L
Sbjct: 223 DNLRAAGTKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPLSVREVQKLA 282
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
GR+AALNRF+S+ AER LPFFK LR +KF W ECQ AF +LK YL L PG
Sbjct: 283 GRIAALNRFLSKAAERGLPFFKTLRGVEKFHWTPECQAAFGELKQYLQSPPALISLAPGS 342
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L LYL+ VS L++E S Q+PVY++SK L+ A+ RY E+EK ALV+ + +L+
Sbjct: 343 ELLLYLAASPVAVSAALVQEIDSGQKPVYFISKALQGAKTRYIEMEKLAYALVMASCKLK 402
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YF +HKVIV + PL ++ EV GRL KWA ELS +D+ F R+AIK+Q LADFV E
Sbjct: 403 HYFQTHKVIVPSQYPLGEILWGKEVTGRLSKWAAELSPFDLHFVARTAIKSQVLADFVAE 462
Query: 901 ST-----RDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEY 1065
T + + WV+Y DGS G G VLISP G+ +A RL+F +NN AEY
Sbjct: 463 WTPALAPEPEPVKQPWVMYSDGSWSHKGAGIAAVLISPSGVPIRYAARLQFDTTNNAAEY 522
Query: 1066 EAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIK 1245
EA + G++ A +G R++I DS+LV V FE +EE MKRY+E R++E I
Sbjct: 523 EAILLGLRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEVVRSMEKCFTGIT 582
Query: 1246 ICQVPREENGRA 1281
+ +PR +N A
Sbjct: 583 VEHLPRGQNEEA 594
>emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]
Length = 1154
Score = 413 bits (1061), Expect = e-112
Identities = 226/489 (46%), Positives = 309/489 (63%), Gaps = 19/489 (3%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
GTFC++ MPFGL+NAGAT+ RLV K+ +QLGRN+E YVDD++VKS KA DHV DL ETF
Sbjct: 639 GTFCHLRMPFGLRNAGATFARLVYKVLYKQLGRNVEAYVDDIVVKSRKAFDHVSDLQETF 698
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
D LR MKLNP+KC FGVR+GK LG++V+E+GIEANP K+ AI++M PP ++VQ L
Sbjct: 699 DNLRVAGMKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLA 758
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G++AAL+RF+S+ AER LPFFK LR A KF W ECQ AF+++K Y L P G
Sbjct: 759 GQIAALSRFLSKAAERGLPFFKTLRGAGKFSWTPECQAAFDEVKQYPQSPPTLVSPALGS 818
Query: 541 PLYLYLSVGEQGVSTVLIREERSVQRPVYYVSKVLRNAELRYAEIEKAGLALVVTARRLR 720
L LYL+ VS L++E S Q+PVY++S+ L+ A+LRY E+EK ALV+ +R+L+
Sbjct: 819 ELLLYLAASPVAVSAALVQETESGQKPVYFISEALQGAKLRYIEMEKFTYALVMASRKLK 878
Query: 721 PYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQALADFVQE 900
YF +HKV V + PL V+ E+ G L KW ELS +D+ F R+AIK+Q LADFV +
Sbjct: 879 HYFQAHKVTVPSQYPLGEVLRGKEITGWLSKWVAELSPFDLHFVARTAIKSQVLADFVAK 938
Query: 901 -----STRDDSSEGAWVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLSNNEAEY 1065
++ + E WV+Y D S G GA VL SP G+ +A RL+F +NN AEY
Sbjct: 939 WTPAFASETEPVEQPWVMYSDSSWSHKGAGAVAVLTSPGGMLIRYAARLQFDTTNNTAEY 998
Query: 1066 EAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEGRVKEIK 1245
+A + G++ A +G R++I DS+ V + FE +EE MKRY+EA R++E I
Sbjct: 999 KAVLLGLRKAKALGVRRLLIRTDSKRVASLLDKSFEAKEEGMKRYLEAIRSMEKCFAGIT 1058
Query: 1246 ICQVPREENGRADFLAKLASS--------------ALENQAKHITLLVAKETALGLEVGE 1383
+ +PR +N AD LAK A+S A + + ++ + LG
Sbjct: 1059 VEHLPRGQNEEADALAKSAASGGPHSPGILFEVLYAPSVPTESLDIMAVDQAELG----- 1113
Query: 1384 IEEKEDWRS 1410
E+ EDWR+
Sbjct: 1114 -EDPEDWRT 1121
>emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa Japonica Group]
Length = 2013
Score = 412 bits (1060), Expect = e-112
Identities = 217/446 (48%), Positives = 292/446 (65%), Gaps = 11/446 (2%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G +CYV MPFGLKNAGATYQR++ + F Q+GRN+E YVDD++VK+ + D + DL ETF
Sbjct: 1118 GAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETF 1177
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
++R +RMKLNP+KC FGV SGK LG+MV+ +GI+ANP KV AI M PP KDVQ LT
Sbjct: 1178 ASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLT 1237
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G +AAL+RF+SRL ER +PFFK+L+K F W E QKAFED K L + +L P P E
Sbjct: 1238 GCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQE 1297
Query: 541 PLYLYLSVGEQGVSTVLI--REE----RSVQRPVYYVSKVLRNAELRYAEIEKAGLALVV 702
PL LY+S Q VSTVL+ REE + VQRP+Y+VS+VL +++ RY +++K +++
Sbjct: 1298 PLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILI 1357
Query: 703 TARRLRPYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQAL 882
T R+L YF H V V T+ PL +++ EV GR+ KWA+EL DI F+ R +IK+QAL
Sbjct: 1358 TTRKLSHYFQGHSVTVVTSFPLGDILHNREVNGRIAKWALELMSLDISFKPRISIKSQAL 1417
Query: 883 ADFVQESTRDDSSEGA-----WVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLS 1047
ADFV E T A W ++ DGS SG GAG+VLISP G + + + F S
Sbjct: 1418 ADFVAEWTECQEDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1477
Query: 1048 NNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEG 1227
+N AEYEA + G+++AI +G R+++ DSQLV QVM E+ ++ M Y + R LE
Sbjct: 1478 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLED 1537
Query: 1228 RVKEIKICQVPREENGRADFLAKLAS 1305
+ +++ V R N AD LA S
Sbjct: 1538 KFDGLELSHVLRHNNEAADRLANFGS 1563
>gb|ABA97396.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2196
Score = 412 bits (1059), Expect = e-112
Identities = 216/446 (48%), Positives = 291/446 (65%), Gaps = 11/446 (2%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G +CY+ MPFGLKNAGATYQR++ + F Q+GRN+E YVDD++VK+ + D + DL ETF
Sbjct: 1301 GAYCYITMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETF 1360
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
++R +RMKLNP+KC FGV SGK LG+MV+ +GI+ANP KV AI M PPR KDVQ LT
Sbjct: 1361 ASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPRTQKDVQKLT 1420
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G +AAL+RF+SRL ER +PFFK+L+K F W E QKAFED K L + +L P P E
Sbjct: 1421 GCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQE 1480
Query: 541 PLYLYLSVGEQGVSTVLI--REE----RSVQRPVYYVSKVLRNAELRYAEIEKAGLALVV 702
PL LY+S Q VSTVL+ REE + VQRP+Y+VS+VL + + RY +++K +++
Sbjct: 1481 PLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADTKTRYPQVQKLLYGILI 1540
Query: 703 TARRLRPYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQAL 882
T R+L YF H V V T+ PL +++ E GR+ KWA+EL DI F+ R +IK+QAL
Sbjct: 1541 TTRKLSHYFQGHPVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQAL 1600
Query: 883 ADFVQESTRDDSSEGA-----WVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLS 1047
ADFV E T A W ++ DGS SG GAG+VLISP G + + + F S
Sbjct: 1601 ADFVAEWTECQEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1660
Query: 1048 NNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEG 1227
+N AEYEA + G+++AI +G R+++ DSQLV QVM E+ ++ M Y + R LE
Sbjct: 1661 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMTYRQEVRKLED 1720
Query: 1228 RVKEIKICQVPREENGRADFLAKLAS 1305
+ +++ V R N AD LA S
Sbjct: 1721 KFDGLELSHVLRHNNEAADRLANFGS 1746
>gb|AAX96872.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77549715|gb|ABA92512.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1945
Score = 412 bits (1059), Expect = e-112
Identities = 217/446 (48%), Positives = 292/446 (65%), Gaps = 11/446 (2%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G +CYV MPFGLKNAGATYQR++ + F Q+GRN+E YVDD++VK+ + D V DL ETF
Sbjct: 1050 GAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLVSDLEETF 1109
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
++R +RMKLNP+KC FGV SGK LG+MV+ +GI+ANP KV AI M PP + KDVQ LT
Sbjct: 1110 ASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSNQKDVQKLT 1169
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G +AAL+RF+SRL ER +PFFK+L+K F W E QKAFED K L + +L P P E
Sbjct: 1170 GCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQE 1229
Query: 541 PLYLYLSVGEQGVSTVLI--REE----RSVQRPVYYVSKVLRNAELRYAEIEKAGLALVV 702
PL LY+S Q VSTVL+ REE + VQRP+Y+VS+VL +++ RY +++K +++
Sbjct: 1230 PLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILI 1289
Query: 703 TARRLRPYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQAL 882
T R+L YF H V V T+ PL +++ E GR+ KWA+EL DI F+ R +IK+QAL
Sbjct: 1290 TTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQAL 1349
Query: 883 ADFVQESTRDDSSEGA-----WVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLS 1047
ADFV E T A W ++ DGS SG GAG+VLISP G + + + F S
Sbjct: 1350 ADFVAEWTECQEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1409
Query: 1048 NNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEG 1227
+N AEYEA + G+++AI +G R+++ DSQLV QVM E+ ++ M Y + R LE
Sbjct: 1410 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1469
Query: 1228 RVKEIKICQVPREENGRADFLAKLAS 1305
+ +++ V R N AD LA S
Sbjct: 1470 KFDGLELSHVLRHNNEAADRLANFGS 1495
>gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1799
Score = 412 bits (1059), Expect = e-112
Identities = 215/446 (48%), Positives = 292/446 (65%), Gaps = 11/446 (2%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G +CYV MPFGLKNAGATYQR++ + F Q+GRN+E YVDD+++K+ + D + DL ETF
Sbjct: 904 GAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKDDLISDLEETF 963
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
++R +RMKLNP+KC FGV SGK LG+MV+ +GI+ANP KV AI M PP KDVQ LT
Sbjct: 964 ASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLT 1023
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G +AAL+RF+SRL ER +PFFK+L+K F W E QKAFED K +L + +L P P E
Sbjct: 1024 GCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEPPVLASPHPQE 1083
Query: 541 PLYLYLSVGEQGVSTVLI--REE----RSVQRPVYYVSKVLRNAELRYAEIEKAGLALVV 702
PL LY+S Q VSTVL+ REE + VQRP+Y+VS+VL +++ RY +++K +++
Sbjct: 1084 PLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILI 1143
Query: 703 TARRLRPYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQAL 882
T R+L YF H V V T+ PL +++ E GR+ KWA+EL DI F+ R +IK+QAL
Sbjct: 1144 TTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQAL 1203
Query: 883 ADFVQESTRDDSSEGA-----WVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLS 1047
ADFV E T A W ++ DGS SG GAG+VLISP G + + + F S
Sbjct: 1204 ADFVAEWTECQEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1263
Query: 1048 NNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEG 1227
+N AEYEA + G+++AI +G R+++ DSQLV QVM E+ ++ M Y + R LE
Sbjct: 1264 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1323
Query: 1228 RVKEIKICQVPREENGRADFLAKLAS 1305
+ +++ V R N AD LA S
Sbjct: 1324 KFDGLELSHVLRHNNEAADRLANFGS 1349
>gb|AAS79740.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1756
Score = 412 bits (1059), Expect = e-112
Identities = 215/446 (48%), Positives = 292/446 (65%), Gaps = 11/446 (2%)
Frame = +1
Query: 1 GTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVDHVHDLAETF 180
G +CYV MPFGLKNAGATYQR++ + F Q+GRN+E YVDD+++K+ + D + DL ETF
Sbjct: 861 GAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKDDLISDLEETF 920
Query: 181 DTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANP*KVRAIREMAPPRDAKDVQCLT 360
++R +RMKLNP+KC FGV SGK LG+MV+ +GI+ANP KV AI M PP KDVQ LT
Sbjct: 921 ASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLT 980
Query: 361 GRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEECQKAFEDLKNYLADLSLLTKPLPGE 540
G +AAL+RF+SRL ER +PFFK+L+K F W E QKAFED K +L + +L P P E
Sbjct: 981 GCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEPPVLASPHPQE 1040
Query: 541 PLYLYLSVGEQGVSTVLI--REE----RSVQRPVYYVSKVLRNAELRYAEIEKAGLALVV 702
PL LY+S Q VSTVL+ REE + VQRP+Y+VS+VL +++ RY +++K +++
Sbjct: 1041 PLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILI 1100
Query: 703 TARRLRPYFLSHKVIVRTNLPLRNVMSKPEVAGRLVKWAIELSEYDIGFENRSAIKAQAL 882
T R+L YF H V V T+ PL +++ E GR+ KWA+EL DI F+ R +IK+QAL
Sbjct: 1101 TTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQAL 1160
Query: 883 ADFVQESTRDDSSEGA-----WVIYVDGSVGSSGCGAGIVLISPQGIENDFAVRLEFKLS 1047
ADFV E T A W ++ DGS SG GAG+VLISP G + + + F S
Sbjct: 1161 ADFVAEWTECQEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1220
Query: 1048 NNEAEYEAFIRGMQMAIEMGAVRMVIYMDSQLVHKQVMGEFEVREERMKRYVEAYRALEG 1227
+N AEYEA + G+++AI +G R+++ DSQLV QVM E+ ++ M Y + R LE
Sbjct: 1221 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1280
Query: 1228 RVKEIKICQVPREENGRADFLAKLAS 1305
+ +++ V R N AD LA S
Sbjct: 1281 KFDGLELSHVLRHNNEAADRLANFGS 1306