BLASTX nr result
ID: Rehmannia23_contig00005306
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00005306
(553 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS66084.1| hypothetical protein M569_08688 [Genlisea aurea] 84 2e-14
ref|XP_006355275.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 82 9e-14
ref|XP_004244948.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 82 9e-14
gb|ESW35266.1| hypothetical protein PHAVU_001G220500g [Phaseolus... 69 6e-10
gb|EOY11811.1| DEAD box RNA helicase (RH3) isoform 4 [Theobroma ... 65 1e-08
gb|EOY11810.1| DEAD box RNA helicase (RH3) isoform 3, partial [T... 65 1e-08
gb|EOY11809.1| DEAD box RNA helicase isoform 2 [Theobroma cacao] 65 1e-08
gb|EOY11808.1| DEAD box RNA helicase isoform 1 [Theobroma cacao] 65 1e-08
ref|XP_006382238.1| hypothetical protein POPTR_0005s00240g [Popu... 62 9e-08
ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|5... 62 9e-08
ref|XP_004495832.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 62 1e-07
ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabi... 60 3e-07
ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidop... 60 3e-07
gb|AAM91087.1| At5g26740 [Arabidopsis thaliana] 60 3e-07
emb|CAA09196.1| RNA helicase [Arabidopsis thaliana] 60 3e-07
gb|AAC13590.1| contains similarity to the conserved C-terminal d... 60 3e-07
ref|XP_006382234.1| hypothetical protein POPTR_0005s00200g [Popu... 60 5e-07
ref|XP_006382233.1| hypothetical protein POPTR_0005s00200g [Popu... 60 5e-07
ref|XP_002330040.1| predicted protein [Populus trichocarpa] 60 5e-07
ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicag... 58 2e-06
>gb|EPS66084.1| hypothetical protein M569_08688 [Genlisea aurea]
Length = 775
Score = 84.0 bits (206), Expect = 2e-14
Identities = 73/175 (41%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Frame = -2
Query: 486 MACSSSIIRVSSM---------YQNNPSLDLSNKPSWLHFSIARNPFKAFSSIV----VR 346
MACSSS + VSS+ Y LS LHFS A NP +AFSS V
Sbjct: 1 MACSSSTVGVSSICPIAAHPNDYAKRTVYHLS-----LHFSAAHNPLRAFSSGVRLGSAS 55
Query: 345 PKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXE 166
SS SF SAV TPNSSVLSEEA E
Sbjct: 56 GSSSNSFSASAVFTPNSSVLSEEA-----------FKGLGGLGIEEDGVLRDVESVSVDE 104
Query: 165 LDISRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
LDI+++ + ++ T + FP IQRAVL+PAL+GRDIIARAKTGTGKT
Sbjct: 105 LDITKLGLSQRLVETLEKRGITQLFP---IQRAVLVPALEGRDIIARAKTGTGKT 156
>ref|XP_006355275.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Solanum tuberosum]
Length = 744
Score = 82.0 bits (201), Expect = 9e-14
Identities = 68/167 (40%), Positives = 84/167 (50%), Gaps = 5/167 (2%)
Frame = -2
Query: 486 MACSSSIIRVSSMYQNNPSLDLSNKPS-----WLHFSIARNPFKAFSSIVVRPKSSISFV 322
MA SSSII VSS+YQ NPSL+LS +P+ L FS ++ F V + F+
Sbjct: 1 MASSSSIIGVSSIYQTNPSLELSRRPTATPPLSLPFSTEKSNFH------VHVRLRRPFL 54
Query: 321 PSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRF 142
SAV TPNSSVLSEEA EL +S++
Sbjct: 55 ASAVVTPNSSVLSEEA--FKGIGGFGKDSLNVSESEYDSEDEVEDNESNEDELAVSKLGL 112
Query: 141 CRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
++ + FP IQRAVL+PAL+GRDIIARAKTGTGKT
Sbjct: 113 PHRLVEALEKRGITQLFP---IQRAVLVPALEGRDIIARAKTGTGKT 156
>ref|XP_004244948.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Solanum lycopersicum]
Length = 746
Score = 82.0 bits (201), Expect = 9e-14
Identities = 68/167 (40%), Positives = 84/167 (50%), Gaps = 5/167 (2%)
Frame = -2
Query: 486 MACSSSIIRVSSMYQNNPSLDLSNKPS-----WLHFSIARNPFKAFSSIVVRPKSSISFV 322
MA SSSII VSS+YQ NPSL+LS +P+ L FSI ++ F V + F+
Sbjct: 1 MASSSSIIGVSSIYQTNPSLELSRRPTATPPLSLPFSIEKSNFH------VHVRLRRPFL 54
Query: 321 PSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRF 142
SAV TP SSVLSEEA EL +S++
Sbjct: 55 ASAVVTPTSSVLSEEA--FKGIGGFGKDSLNVSESEYDSEDEVEDNESNEDELSVSKLGL 112
Query: 141 CRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
++ + FP IQRAVL+PAL+GRDIIARAKTGTGKT
Sbjct: 113 PHRLVDALEKRGITQLFP---IQRAVLVPALEGRDIIARAKTGTGKT 156
>gb|ESW35266.1| hypothetical protein PHAVU_001G220500g [Phaseolus vulgaris]
Length = 776
Score = 69.3 bits (168), Expect = 6e-10
Identities = 63/177 (35%), Positives = 84/177 (47%), Gaps = 19/177 (10%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLDLSNKPSWLHFSIAR-------------------NPFKAFSSIV 352
+S+I VSS+YQ P+L+L ++P+ S R +P F + +
Sbjct: 2 ASLIGVSSIYQT-PTLELYHRPNATSTSAVRLQCLDSKSHFNNLLRAHRHSPGPTFKTGL 60
Query: 351 VRPKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXX 172
K + +F+PSAVATPNSS+LSEEA
Sbjct: 61 ---KPTPTFLPSAVATPNSSLLSEEAFKGLGRHFDQTDHEFQDASDSHTAEPLNSDE--- 114
Query: 171 XELDISRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
LDIS++ ++ + FP IQRAVL+PALQGRDIIARAKTGTGKT
Sbjct: 115 --LDISKLDLPSRLVDSLQNRGITQLFP---IQRAVLVPALQGRDIIARAKTGTGKT 166
>gb|EOY11811.1| DEAD box RNA helicase (RH3) isoform 4 [Theobroma cacao]
Length = 622
Score = 65.1 bits (157), Expect = 1e-08
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLD---LSNKPSWLHFSIARN----PFK---AFSSIVV--RPKSSI 331
+S++ +SS + PSLD +SN+ F+ A + PF F+++VV RP S
Sbjct: 2 ASLVGLSSSIHHTPSLDTFSISNRRI-TSFTAAASCLPLPFTDKAQFNALVVAGRPLLSF 60
Query: 330 --SFVPSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDI 157
SFVP AVATPNS VLSE+A LDI
Sbjct: 61 KHSFVPRAVATPNS-VLSEQAFKGLSLHQDQDGQDVYEAAASSNHDDE---------LDI 110
Query: 156 SRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
S++ + ++ + L+ FP IQRAV +PALQGRDIIARAKTGTGKT
Sbjct: 111 SKLGLPQRLVDSLLQRGITHLFP---IQRAVFVPALQGRDIIARAKTGTGKT 159
>gb|EOY11810.1| DEAD box RNA helicase (RH3) isoform 3, partial [Theobroma cacao]
Length = 689
Score = 65.1 bits (157), Expect = 1e-08
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLD---LSNKPSWLHFSIARN----PFK---AFSSIVV--RPKSSI 331
+S++ +SS + PSLD +SN+ F+ A + PF F+++VV RP S
Sbjct: 2 ASLVGLSSSIHHTPSLDTFSISNRRI-TSFTAAASCLPLPFTDKAQFNALVVAGRPLLSF 60
Query: 330 --SFVPSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDI 157
SFVP AVATPNS VLSE+A LDI
Sbjct: 61 KHSFVPRAVATPNS-VLSEQAFKGLSLHQDQDGQDVYEAAASSNHDDE---------LDI 110
Query: 156 SRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
S++ + ++ + L+ FP IQRAV +PALQGRDIIARAKTGTGKT
Sbjct: 111 SKLGLPQRLVDSLLQRGITHLFP---IQRAVFVPALQGRDIIARAKTGTGKT 159
>gb|EOY11809.1| DEAD box RNA helicase isoform 2 [Theobroma cacao]
Length = 732
Score = 65.1 bits (157), Expect = 1e-08
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLD---LSNKPSWLHFSIARN----PFK---AFSSIVV--RPKSSI 331
+S++ +SS + PSLD +SN+ F+ A + PF F+++VV RP S
Sbjct: 2 ASLVGLSSSIHHTPSLDTFSISNRRI-TSFTAAASCLPLPFTDKAQFNALVVAGRPLLSF 60
Query: 330 --SFVPSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDI 157
SFVP AVATPNS VLSE+A LDI
Sbjct: 61 KHSFVPRAVATPNS-VLSEQAFKGLSLHQDQDGQDVYEAAASSNHDDE---------LDI 110
Query: 156 SRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
S++ + ++ + L+ FP IQRAV +PALQGRDIIARAKTGTGKT
Sbjct: 111 SKLGLPQRLVDSLLQRGITHLFP---IQRAVFVPALQGRDIIARAKTGTGKT 159
>gb|EOY11808.1| DEAD box RNA helicase isoform 1 [Theobroma cacao]
Length = 742
Score = 65.1 bits (157), Expect = 1e-08
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLD---LSNKPSWLHFSIARN----PFK---AFSSIVV--RPKSSI 331
+S++ +SS + PSLD +SN+ F+ A + PF F+++VV RP S
Sbjct: 2 ASLVGLSSSIHHTPSLDTFSISNRRI-TSFTAAASCLPLPFTDKAQFNALVVAGRPLLSF 60
Query: 330 --SFVPSAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDI 157
SFVP AVATPNS VLSE+A LDI
Sbjct: 61 KHSFVPRAVATPNS-VLSEQAFKGLSLHQDQDGQDVYEAAASSNHDDE---------LDI 110
Query: 156 SRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
S++ + ++ + L+ FP IQRAV +PALQGRDIIARAKTGTGKT
Sbjct: 111 SKLGLPQRLVDSLLQRGITHLFP---IQRAVFVPALQGRDIIARAKTGTGKT 159
>ref|XP_006382238.1| hypothetical protein POPTR_0005s00240g [Populus trichocarpa]
gi|550337589|gb|ERP60035.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
Length = 731
Score = 62.0 bits (149), Expect = 9e-08
Identities = 51/143 (35%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = -2
Query: 423 LSNKPSWLHFSIARNPFKAFSSIVVRPKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXX 244
LS +P + IA+ S+++ SS PSA+A+PNS +LSEEA
Sbjct: 46 LSERPPHFNSLIAKTQLSFKHSLIINNSSSSFSPPSAIASPNS-ILSEEAFKGLDGFSDF 104
Query: 243 XLXXXXXXXXXXXXXXXXXXXXXXXE--LDISRIRFCRYVLWTRLRARDY*AFPYSAIQR 70
E LD+S++ ++ T FP IQR
Sbjct: 105 EADVDAGGADVDYASSETEPSSNTSEDELDVSKLGLPHRLVQTLQNRGITHLFP---IQR 161
Query: 69 AVLIPALQGRDIIARAKTGTGKT 1
AVLIPAL+GRD+IARAKTGTGKT
Sbjct: 162 AVLIPALEGRDLIARAKTGTGKT 184
>ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|566168507|ref|XP_006382239.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
gi|550337590|gb|ERP60036.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
Length = 775
Score = 62.0 bits (149), Expect = 9e-08
Identities = 51/143 (35%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = -2
Query: 423 LSNKPSWLHFSIARNPFKAFSSIVVRPKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXX 244
LS +P + IA+ S+++ SS PSA+A+PNS +LSEEA
Sbjct: 46 LSERPPHFNSLIAKTQLSFKHSLIINNSSSSFSPPSAIASPNS-ILSEEAFKGLDGFSDF 104
Query: 243 XLXXXXXXXXXXXXXXXXXXXXXXXE--LDISRIRFCRYVLWTRLRARDY*AFPYSAIQR 70
E LD+S++ ++ T FP IQR
Sbjct: 105 EADVDAGGADVDYASSETEPSSNTSEDELDVSKLGLPHRLVQTLQNRGITHLFP---IQR 161
Query: 69 AVLIPALQGRDIIARAKTGTGKT 1
AVLIPAL+GRD+IARAKTGTGKT
Sbjct: 162 AVLIPALEGRDLIARAKTGTGKT 184
>ref|XP_004495832.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cicer arietinum]
Length = 571
Score = 61.6 bits (148), Expect = 1e-07
Identities = 46/113 (40%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Frame = -2
Query: 336 SISFVPSAVATPNSSVL-SEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELD 160
++SFV SA+ATPNSS+L S+EA LD
Sbjct: 52 TLSFVTSAIATPNSSILTSQEAFEGFTFQDSNDQLTISKDE-----------------LD 94
Query: 159 ISRIRFCRYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
IS++RF ++ + FP IQRAVL+PA++GRDIIARAKTGTGKT
Sbjct: 95 ISKLRFPSQLVHSLHNRGITNLFP---IQRAVLLPAIEGRDIIARAKTGTGKT 144
>ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName:
Full=DEAD-box ATP-dependent RNA helicase 3,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
1138; Flags: Precursor gi|19347898|gb|AAL85971.1|
unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis
thaliana] gi|20453225|gb|AAM19851.1| At5g26752
[Arabidopsis thaliana] gi|21689779|gb|AAM67533.1|
unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis
thaliana] gi|25090432|gb|AAN72300.1| At5g26752/At5g26752
[Arabidopsis thaliana] gi|27311701|gb|AAO00816.1|
Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein
[Arabidopsis thaliana] gi|332006182|gb|AED93565.1|
DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis
thaliana]
Length = 748
Score = 60.5 bits (145), Expect = 3e-07
Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLDLSN-----KPSWLHFSIARNPFKAFSSIVVRPK---SSISFVP 319
+S + V S+YQ P L++S + + L S+ + PF S+V R + SS VP
Sbjct: 2 ASTVGVPSLYQV-PHLEISKPNSKKRSNCLSLSLDK-PFFTPLSLVRRTRRIHSSSLLVP 59
Query: 318 SAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRFC 139
SAVATPNS VLSEEA L IS++
Sbjct: 60 SAVATPNS-VLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEE--------LAISKLSLP 110
Query: 138 RYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
+ + + + FP IQRAVL+PALQGRDIIARAKTGTGKT
Sbjct: 111 QRLEESLEKRGITHLFP---IQRAVLVPALQGRDIIARAKTGTGKT 153
>ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis
thaliana] gi|28416497|gb|AAO42779.1| At5g26743
[Arabidopsis thaliana] gi|332006181|gb|AED93564.1|
DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis
thaliana]
Length = 747
Score = 60.5 bits (145), Expect = 3e-07
Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLDLSN-----KPSWLHFSIARNPFKAFSSIVVRPK---SSISFVP 319
+S + V S+YQ P L++S + + L S+ + PF S+V R + SS VP
Sbjct: 2 ASTVGVPSLYQV-PHLEISKPNSKKRSNCLSLSLDK-PFFTPLSLVRRTRRIHSSSLLVP 59
Query: 318 SAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRFC 139
SAVATPNS VLSEEA L IS++
Sbjct: 60 SAVATPNS-VLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEE--------LAISKLSLP 110
Query: 138 RYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
+ + + + FP IQRAVL+PALQGRDIIARAKTGTGKT
Sbjct: 111 QRLEESLEKRGITHLFP---IQRAVLVPALQGRDIIARAKTGTGKT 153
>gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 60.5 bits (145), Expect = 3e-07
Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLDLSN-----KPSWLHFSIARNPFKAFSSIVVRPK---SSISFVP 319
+S + V S+YQ P L++S + + L S+ + PF S+V R + SS VP
Sbjct: 2 ASTVGVPSLYQV-PHLEISKPNSKKRSNCLSLSLDK-PFFTPLSLVRRTRRIHSSSLLVP 59
Query: 318 SAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRFC 139
SAVATPNS VLSEEA L IS++
Sbjct: 60 SAVATPNS-VLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEE--------LAISKLSLP 110
Query: 138 RYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
+ + + + FP IQRAVL+PALQGRDIIARAKTGTGKT
Sbjct: 111 QRLEESLEKRGITHLFP---IQRAVLVPALQGRDIIARAKTGTGKT 153
>emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 60.5 bits (145), Expect = 3e-07
Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLDLSN-----KPSWLHFSIARNPFKAFSSIVVRPK---SSISFVP 319
+S + V S+YQ P L++S + + L S+ + PF S+V R + SS VP
Sbjct: 2 ASTVGVPSLYQV-PHLEISKPNSKKRSNCLSLSLDK-PFFTPLSLVRRTRRIHSSSLLVP 59
Query: 318 SAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRFC 139
SAVATPNS VLSEEA L IS++
Sbjct: 60 SAVATPNS-VLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEE--------LAISKLSLP 110
Query: 138 RYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
+ + + + FP IQRAVL+PALQGRDIIARAKTGTGKT
Sbjct: 111 QRLEESLEKRGITHLFP---IQRAVLVPALQGRDIIARAKTGTGKT 153
>gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 60.5 bits (145), Expect = 3e-07
Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = -2
Query: 474 SSIIRVSSMYQNNPSLDLSN-----KPSWLHFSIARNPFKAFSSIVVRPK---SSISFVP 319
+S + V S+YQ P L++S + + L S+ + PF S+V R + SS VP
Sbjct: 2 ASTVGVPSLYQV-PHLEISKPNSKKRSNCLSLSLDK-PFFTPLSLVRRTRRIHSSSLLVP 59
Query: 318 SAVATPNSSVLSEEAXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRFC 139
SAVATPNS VLSEEA L IS++
Sbjct: 60 SAVATPNS-VLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEE--------LAISKLSLP 110
Query: 138 RYVLWTRLRARDY*AFPYSAIQRAVLIPALQGRDIIARAKTGTGKT 1
+ + + + FP IQRAVL+PALQGRDIIARAKTGTGKT
Sbjct: 111 QRLEESLEKRGITHLFP---IQRAVLVPALQGRDIIARAKTGTGKT 153
>ref|XP_006382234.1| hypothetical protein POPTR_0005s00200g [Populus trichocarpa]
gi|550337585|gb|ERP60031.1| hypothetical protein
POPTR_0005s00200g [Populus trichocarpa]
Length = 774
Score = 59.7 bits (143), Expect = 5e-07
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Frame = -2
Query: 423 LSNKPSWLHFSIARNPFKAFSSIVVRPKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXX 244
LS KP + IA+ S+++ S+ + PSA+ATPN +LSEEA
Sbjct: 50 LSEKPPHFNSLIAKTQLSFKHSLIINTNSTFT-PPSAIATPNP-ILSEEAFKGLDGFSDF 107
Query: 243 XLXXXXXXXXXXXXXXXXXXXXXXXE-LDISRIRFCRYVLWTRLRARDY*AFPYSAIQRA 67
+ LDIS++ + ++ T FP IQRA
Sbjct: 108 EADADTDDAVDYDSSETEPNSNTSEDELDISKLGLPQRLVQTLQNRGITHLFP---IQRA 164
Query: 66 VLIPALQGRDIIARAKTGTGKT 1
VLIP L+GRD+IARAKTGTGKT
Sbjct: 165 VLIPTLEGRDLIARAKTGTGKT 186
>ref|XP_006382233.1| hypothetical protein POPTR_0005s00200g [Populus trichocarpa]
gi|550337584|gb|ERP60030.1| hypothetical protein
POPTR_0005s00200g [Populus trichocarpa]
Length = 773
Score = 59.7 bits (143), Expect = 5e-07
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Frame = -2
Query: 423 LSNKPSWLHFSIARNPFKAFSSIVVRPKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXX 244
LS KP + IA+ S+++ S+ + PSA+ATPN +LSEEA
Sbjct: 50 LSEKPPHFNSLIAKTQLSFKHSLIINTNSTFT-PPSAIATPNP-ILSEEAFKGLDGFSDF 107
Query: 243 XLXXXXXXXXXXXXXXXXXXXXXXXE-LDISRIRFCRYVLWTRLRARDY*AFPYSAIQRA 67
+ LDIS++ + ++ T FP IQRA
Sbjct: 108 EADADTDDAVDYDSSETEPNSNTSEDELDISKLGLPQRLVQTLQNRGITHLFP---IQRA 164
Query: 66 VLIPALQGRDIIARAKTGTGKT 1
VLIP L+GRD+IARAKTGTGKT
Sbjct: 165 VLIPTLEGRDLIARAKTGTGKT 186
>ref|XP_002330040.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 59.7 bits (143), Expect = 5e-07
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Frame = -2
Query: 423 LSNKPSWLHFSIARNPFKAFSSIVVRPKSSISFVPSAVATPNSSVLSEEAXXXXXXXXXX 244
LS KP + IA+ S+++ S+ + PSA+ATPN +LSEEA
Sbjct: 11 LSEKPPHFNSLIAKTQLSFKHSLIINTNSTFT-PPSAIATPNP-ILSEEAFKGLDGFSDF 68
Query: 243 XLXXXXXXXXXXXXXXXXXXXXXXXE-LDISRIRFCRYVLWTRLRARDY*AFPYSAIQRA 67
+ LDIS++ + ++ T FP IQRA
Sbjct: 69 EADADTDDAVDYDSSETEPNSNTSEDELDISKLGLPQRLVQTLQNRGITHLFP---IQRA 125
Query: 66 VLIPALQGRDIIARAKTGTGKT 1
VLIP L+GRD+IARAKTGTGKT
Sbjct: 126 VLIPTLEGRDLIARAKTGTGKT 147
>ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA
helicase [Medicago truncatula]
Length = 615
Score = 57.8 bits (138), Expect = 2e-06
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Frame = -2
Query: 423 LSNKPSWLHFSIARNPFKAFSSIVVRPKS---SISFVPSAVATPNSSVLSEEAXXXXXXX 253
L N P+ FS+ + + + +RP ++SFV SA+ATPN+ +L+ +
Sbjct: 15 LLNTPT--SFSLYNTTSRLNTLLRLRPNHKTPTVSFVISAIATPNAPILTPQESFKGFAF 72
Query: 252 XXXXLXXXXXXXXXXXXXXXXXXXXXXXELDISRIRFCRYVLWTRLRARDY*AFPYSAIQ 73
LDIS++ F ++ + R FP IQ
Sbjct: 73 DDANDVPVAVSKNE---------------LDISKLGFPSQLVDSLQRRGITSLFP---IQ 114
Query: 72 RAVLIPALQGRDIIARAKTGTGKT 1
RAVL+PAL+GRDIIARAKTGTGKT
Sbjct: 115 RAVLLPALEGRDIIARAKTGTGKT 138