BLASTX nr result
ID: Rehmannia23_contig00001050
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00001050
(1278 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s... 589 e-166
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s... 587 e-165
gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ... 585 e-164
gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ... 585 e-164
gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ... 585 e-164
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ... 585 e-164
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s... 584 e-164
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par... 578 e-162
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par... 576 e-162
gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ... 571 e-160
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ... 571 e-160
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr... 563 e-158
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s... 563 e-158
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s... 562 e-157
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab... 558 e-156
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis... 557 e-156
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t... 557 e-156
gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor... 556 e-156
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put... 552 e-155
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr... 550 e-154
>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC2-like isoform X2 [Solanum tuberosum]
Length = 1153
Score = 589 bits (1519), Expect = e-166
Identities = 301/396 (76%), Positives = 339/396 (85%), Gaps = 3/396 (0%)
Frame = +3
Query: 99 GDDSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQ 278
G DS + N +++ IDKQ LA+P+KN V+K+ L+PEFLKVRGLVKQHLDSFNYFVRT+
Sbjct: 2 GYDSTMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTE 61
Query: 279 IKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYV 458
IKKIV+AN I S +DP+IYLRY+DV IG PS+V D V EKL P KCR+SD TYAAPIYV
Sbjct: 62 IKKIVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYV 121
Query: 459 NIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVI 638
IEY TGSHG + K++VIIGRMPIMLRS CC+LYGKDE+EL+R GECPLDPGGYFVI
Sbjct: 122 TIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVI 181
Query: 639 KGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFA 818
KGTEKVILIQEQLSKNRIIID DKKG VQASV SSTE TKSKT+I+MEKEK+YL LN F
Sbjct: 182 KGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFK 241
Query: 819 TKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QK 995
TKVPIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIE+C ++TQ+QALEFLE K
Sbjct: 242 TKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDK 301
Query: 996 VKKLP-YST-TYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDA 1169
+ K+P YST EK R LSILRD FLANVPV Q+NFR KC+YVAVMMRRMMEAILNKDA
Sbjct: 302 MLKMPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDA 361
Query: 1170 MDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
MDDKDYVGNKRLELSGQ+LSLLFEDLFKTMNDEAR+
Sbjct: 362 MDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARR 397
>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
vinifera]
Length = 1142
Score = 587 bits (1514), Expect = e-165
Identities = 292/380 (76%), Positives = 331/380 (87%), Gaps = 1/380 (0%)
Frame = +3
Query: 141 LDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSR 320
+ I K A PVK AV+KF LLPEFLKVRGLVKQHLDSFNYFV+T IKKIV+AND I S
Sbjct: 4 MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 63
Query: 321 IDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSHGSKAT 500
+DPSIYLR+KDV IG PS+ +DG+ EKL PH CR+SD+TYAAPI VNIEYITGSH K
Sbjct: 64 VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 123
Query: 501 QMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLS 680
K DV+IGRMPIMLRSCCC+LY KDE EL+R GECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 124 VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 183
Query: 681 KNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGM 860
KNRIIID DKKG + ASV SSTE+TKSKTVI MEKEKI+L LNQF +K+PIMIV+KAMGM
Sbjct: 184 KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 243
Query: 861 ESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLP-YSTTYEKEG 1037
ESDQEVVQM+GR+PRYS LLLPS+E+C ++TQ QALEFLE+KVKKLP Y+ + EKEG
Sbjct: 244 ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEG 303
Query: 1038 RVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 1217
R ++ILRDTF+ANVPVRQNNFRPKC+YVAVM+RRMM+AILNKDAMDDKDYVGNKRLELSG
Sbjct: 304 RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 363
Query: 1218 QMLSLLFEDLFKTMNDEARK 1277
Q++SLLFEDLFKTM E +K
Sbjct: 364 QLISLLFEDLFKTMISEVKK 383
>gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
Length = 1034
Score = 585 bits (1508), Expect = e-164
Identities = 294/401 (73%), Positives = 338/401 (84%), Gaps = 4/401 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 257
M +K +D L N+ + + +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60
Query: 258 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 437
NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120
Query: 438 YAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 617
YAAPI+VNIEYI GSHG K K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180
Query: 618 PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 797
PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181 PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240
Query: 798 LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 977
L LNQF K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QAL
Sbjct: 241 LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300
Query: 978 EFLEQKVKKLPYS-TTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAI 1154
E+LE KVK++ Y+ EKEGR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301 EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360
Query: 1155 LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT E +K
Sbjct: 361 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401
>gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
Length = 1034
Score = 585 bits (1508), Expect = e-164
Identities = 294/401 (73%), Positives = 338/401 (84%), Gaps = 4/401 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 257
M +K +D L N+ + + +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60
Query: 258 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 437
NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120
Query: 438 YAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 617
YAAPI+VNIEYI GSHG K K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180
Query: 618 PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 797
PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181 PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240
Query: 798 LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 977
L LNQF K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QAL
Sbjct: 241 LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300
Query: 978 EFLEQKVKKLPYS-TTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAI 1154
E+LE KVK++ Y+ EKEGR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301 EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360
Query: 1155 LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT E +K
Sbjct: 361 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401
>gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
Length = 1011
Score = 585 bits (1508), Expect = e-164
Identities = 294/401 (73%), Positives = 338/401 (84%), Gaps = 4/401 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 257
M +K +D L N+ + + +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60
Query: 258 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 437
NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120
Query: 438 YAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 617
YAAPI+VNIEYI GSHG K K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180
Query: 618 PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 797
PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181 PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240
Query: 798 LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 977
L LNQF K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QAL
Sbjct: 241 LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300
Query: 978 EFLEQKVKKLPYS-TTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAI 1154
E+LE KVK++ Y+ EKEGR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301 EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360
Query: 1155 LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT E +K
Sbjct: 361 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401
>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 1158
Score = 585 bits (1508), Expect = e-164
Identities = 294/401 (73%), Positives = 338/401 (84%), Gaps = 4/401 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 257
M +K +D L N+ + + +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60
Query: 258 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 437
NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120
Query: 438 YAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 617
YAAPI+VNIEYI GSHG K K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180
Query: 618 PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 797
PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181 PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240
Query: 798 LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 977
L LNQF K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QAL
Sbjct: 241 LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300
Query: 978 EFLEQKVKKLPYS-TTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAI 1154
E+LE KVK++ Y+ EKEGR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301 EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360
Query: 1155 LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT E +K
Sbjct: 361 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401
>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
lycopersicum]
Length = 1183
Score = 584 bits (1506), Expect = e-164
Identities = 299/396 (75%), Positives = 337/396 (85%), Gaps = 3/396 (0%)
Frame = +3
Query: 99 GDDSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQ 278
G DS + N +++ IDKQ LA+ +KN V+K+ L+PEFLKVRGLVKQHLDSFNYFVRT+
Sbjct: 32 GYDSTMSNTTEDSNQGIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTE 91
Query: 279 IKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYV 458
IKKIV+AN I S +DP+IYLRY+DV IG PS+V D V EKL P KCR+SD TYAAPIYV
Sbjct: 92 IKKIVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYV 151
Query: 459 NIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVI 638
I+Y TGSHG + K++VIIGRMPIMLRS CC+LYGKDE+EL+R GECPLDPGGYFVI
Sbjct: 152 TIDYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVI 211
Query: 639 KGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFA 818
KGTEKVILIQEQLSKNRIIID DKKG VQASV SSTE TKSKT+I+MEKEK+YL LN F
Sbjct: 212 KGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFK 271
Query: 819 TKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QK 995
TKVPIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIE+C ++TQ QALEFLE K
Sbjct: 272 TKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESDK 331
Query: 996 VKKLP-YST-TYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDA 1169
+ K+P YST EK R LSILRD FLANVPV Q+NFR KC+YVAVMMRRMMEAILNKDA
Sbjct: 332 MLKMPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDA 391
Query: 1170 MDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
MDDKDYVGNKRLELSGQ+LSLLFEDLFKTMNDEAR+
Sbjct: 392 MDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARR 427
>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
protein POPTR_0015s005302g, partial [Populus trichocarpa]
Length = 1034
Score = 578 bits (1489), Expect = e-162
Identities = 291/398 (73%), Positives = 337/398 (84%), Gaps = 1/398 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYF 266
MVV DS ++ ++ +D K A AAPVK+AV+KF LLPEFLK RGLVKQHLDSFNYF
Sbjct: 1 MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59
Query: 267 VRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAA 446
+ IKKIV+AND I S +DPS+YLR+ DV IG PS+V+D + E++TPH CR+SD TYAA
Sbjct: 60 INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119
Query: 447 PIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGG 626
PI VNIEYI+GSHG K +K DV+IGRMPIMLRSCCC+LYGK+E EL+R GECPLDPGG
Sbjct: 120 PILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGG 179
Query: 627 YFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYL 806
YFV+KGTEKVILIQEQLSKNRIIID DKKG + ASV SSTEATKSKTVI MEKEK+YL L
Sbjct: 180 YFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCL 239
Query: 807 NQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFL 986
NQFA K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE+C V+TQ QALE+L
Sbjct: 240 NQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYL 299
Query: 987 EQKVKKLPY-STTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNK 1163
E VK+ Y S++ EKE R L+ILRD F+ANVPVR+NNFRPKC+YVAVM+RRMMEA+LNK
Sbjct: 300 EAMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNK 359
Query: 1164 DAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
DAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM E +K
Sbjct: 360 DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQK 397
>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
protein POPTR_0015s005302g, partial [Populus trichocarpa]
Length = 1035
Score = 576 bits (1484), Expect = e-162
Identities = 290/399 (72%), Positives = 337/399 (84%), Gaps = 2/399 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYF 266
MVV DS ++ ++ +D K A AAPVK+AV+KF LLPEFLK RGLVKQHLDSFNYF
Sbjct: 1 MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59
Query: 267 VRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAA 446
+ IKKIV+AND I S +DPS+YLR+ DV IG PS+V+D + E++TPH CR+SD TYAA
Sbjct: 60 INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119
Query: 447 PIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGG 626
PI VNIEYI+GSHG K +K DV+IGRMPIMLRSCCC+LYGK+E EL+R GECPLDPGG
Sbjct: 120 PILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGG 179
Query: 627 YFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYL 806
YFV+KGTEKVILIQEQLSKNRIIID DKKG + ASV SSTEATKSKTVI MEKEK+YL L
Sbjct: 180 YFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCL 239
Query: 807 NQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFL 986
NQFA K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE+C V+TQ QALE+L
Sbjct: 240 NQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYL 299
Query: 987 EQKVKKLPY--STTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILN 1160
E VK+ Y S+T ++E R L+ILRD F+ANVPVR+NNFRPKC+YVAVM+RRMMEA+LN
Sbjct: 300 EAMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLN 359
Query: 1161 KDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
KDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM E +K
Sbjct: 360 KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQK 398
>gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
Length = 1006
Score = 571 bits (1471), Expect = e-160
Identities = 289/401 (72%), Positives = 333/401 (83%), Gaps = 4/401 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 257
M +K +D L N+ + + +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60
Query: 258 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 437
NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120
Query: 438 YAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 617
YAAPI+VNIEYI GSHG K K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180
Query: 618 PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 797
PGGYFVIKG EK EQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181 PGGYFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 235
Query: 798 LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 977
L LNQF K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QAL
Sbjct: 236 LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 295
Query: 978 EFLEQKVKKLPYS-TTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAI 1154
E+LE KVK++ Y+ EKEGR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAI
Sbjct: 296 EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 355
Query: 1155 LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT E +K
Sbjct: 356 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 396
>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
Length = 1153
Score = 571 bits (1471), Expect = e-160
Identities = 289/401 (72%), Positives = 333/401 (83%), Gaps = 4/401 (0%)
Frame = +3
Query: 87 MVVKGDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 257
M +K +D L N+ + + +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60
Query: 258 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLT 437
NYFV T IKKIV+AND I S +DPSIYLR+KDV IG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120
Query: 438 YAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 617
YAAPI+VNIEYI GSHG K K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180
Query: 618 PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 797
PGGYFVIKG EK EQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181 PGGYFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 235
Query: 798 LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 977
L LNQF K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QAL
Sbjct: 236 LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 295
Query: 978 EFLEQKVKKLPYS-TTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAI 1154
E+LE KVK++ Y+ EKEGR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAI
Sbjct: 296 EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 355
Query: 1155 LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT E +K
Sbjct: 356 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 396
>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
gi|557534507|gb|ESR45625.1| hypothetical protein
CICLE_v10000078mg [Citrus clementina]
Length = 1149
Score = 563 bits (1452), Expect = e-158
Identities = 280/377 (74%), Positives = 320/377 (84%), Gaps = 1/377 (0%)
Frame = +3
Query: 150 DKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 329
DKQ LAAPVK+ V+KF LLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP
Sbjct: 17 DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
Query: 330 SIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSHGSKATQMK 509
SI+LR+KDV IG PS+ +DGV EKL PH CR+SD+TYAAPI VNIEY+ GSH K T K
Sbjct: 77 SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
Query: 510 RDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNR 689
DV+IGR+PIMLRSC C+LYGKDE EL+R GECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
Query: 690 IIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESD 869
+IID DKKG + ASV SSTE KSKTVI+MEK K+YL LNQF K+PIM+V+KAMGMESD
Sbjct: 197 VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
Query: 870 QEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGRVL 1046
QEVVQM+GRDPRYS LLLPSIE+C ++TQ +ALE+LE KVK+ + S ++EGR
Sbjct: 257 QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
Query: 1047 SILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQML 1226
SILRD FLANVPV NNFRPKC YVAVM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
Query: 1227 SLLFEDLFKTMNDEARK 1277
SLLFEDLFKTM E +K
Sbjct: 377 SLLFEDLFKTMISEVQK 393
>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
sativus]
Length = 1158
Score = 563 bits (1451), Expect = e-158
Identities = 292/404 (72%), Positives = 333/404 (82%), Gaps = 7/404 (1%)
Frame = +3
Query: 87 MVVKGDDSALFND-LQENG----LDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLD 251
MVVK + A N+ L +N DIDKQ + P+K+AV+KF LLPEFLKVRGLVKQHLD
Sbjct: 1 MVVKLPEDASKNEKLGDNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLD 60
Query: 252 SFNYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISD 431
SFNYFV T+IKKIV+AND I S DPSIYLR+ DV IG PS+ ++ V E + PH CR+SD
Sbjct: 61 SFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSD 120
Query: 432 LTYAAPIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECP 611
LTYAAPI V+IEYI SH KA + K+DV+IGRMPIMLRS CC+L+GKDE EL+R GECP
Sbjct: 121 LTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECP 180
Query: 612 LDPGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEK 791
LDPGGYF+IKGTEKV+LIQEQLSKNRIIID DKKG + ASV SSTEATKSKTVI+ME EK
Sbjct: 181 LDPGGYFIIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEK 240
Query: 792 IYLYLNQFAT-KVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQY 968
IYL LN F T K+PIM+VLKAMGMES QEVVQM+GRDPRY LLLPSIE+C KE ++TQ
Sbjct: 241 IYLQLNIFTTPKIPIMVVLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQE 300
Query: 969 QALEFLEQKVKKLPY-STTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMM 1145
QALE+LE KVKK + S EKEGR L ILRD FLANVPV +NNF PKC+YVAVMMRRMM
Sbjct: 301 QALEYLETKVKKFQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMM 360
Query: 1146 EAILNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
+AIL+KDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM E +K
Sbjct: 361 DAILSKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMVSEVKK 404
>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC2-like isoform X2 [Citrus sinensis]
Length = 1149
Score = 562 bits (1448), Expect = e-157
Identities = 279/377 (74%), Positives = 320/377 (84%), Gaps = 1/377 (0%)
Frame = +3
Query: 150 DKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 329
DKQ LAAPVK+ V+KF LLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP
Sbjct: 17 DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
Query: 330 SIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSHGSKATQMK 509
SI+LR+KDV IG PS+ +DGV EKL PH CR+SD+TYAAPI VNIEY+ GSH K T K
Sbjct: 77 SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
Query: 510 RDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNR 689
DV+IGR+PIMLRSC C+LYGKDE EL+R GECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
Query: 690 IIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESD 869
+IID DKKG + ASV SSTE KSKTVI+MEK K+YL LNQF K+PIM+V+KAMG+ESD
Sbjct: 197 VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256
Query: 870 QEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGRVL 1046
QEVVQM+GRDPRYS LLLPSIE+C ++TQ +ALE+LE KVK+ + S ++EGR
Sbjct: 257 QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
Query: 1047 SILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQML 1226
SILRD FLANVPV NNFRPKC YVAVM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
Query: 1227 SLLFEDLFKTMNDEARK 1277
SLLFEDLFKTM E +K
Sbjct: 377 SLLFEDLFKTMISEVQK 393
>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
Length = 1165
Score = 558 bits (1438), Expect = e-156
Identities = 277/385 (71%), Positives = 324/385 (84%)
Frame = +3
Query: 123 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 302
DL + IDK+ L+AP+K+ +KF L+PEFLKVRGLVKQHLDSFNYF+ IKKIV AN
Sbjct: 9 DLTNDDNFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHAN 68
Query: 303 DLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 482
I S DPSIYLR+K+V +G PS++ + E++ PH CR++D+TYAAPIYVNIEY+ GS
Sbjct: 69 CRIASVTDPSIYLRFKNVRVGEPSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGS 128
Query: 483 HGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 662
HG KAT +K D IIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYFVIKGTEKV+L
Sbjct: 129 HGKKATSVKNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLL 188
Query: 663 IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 842
IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L+QF K+PI+IV
Sbjct: 189 IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIV 248
Query: 843 LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 1022
LKAMGMESDQE+VQM+GRDPR+S LLPSIE+CV E V+TQ QAL++LE KVKK Y
Sbjct: 249 LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYGPP 308
Query: 1023 YEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 1202
EK+GR L ILRD FLA+VPVR NNFR KC YV VM+RRM+EA+LNKD+MDDKDYVGNKR
Sbjct: 309 PEKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKR 368
Query: 1203 LELSGQMLSLLFEDLFKTMNDEARK 1277
LELSGQ++SLLFEDLFKTM EA K
Sbjct: 369 LELSGQLMSLLFEDLFKTMLSEAIK 393
>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 1194
Score = 557 bits (1435), Expect = e-156
Identities = 275/385 (71%), Positives = 325/385 (84%)
Frame = +3
Query: 123 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 302
DL + IDK+ L+AP+K+ +KF L+PEFLKVRGLVKQHLDSFNYF+ I KIV+AN
Sbjct: 30 DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 89
Query: 303 DLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 482
ITS +DPSIYLR+K V +G PS++ E + PH CR++D+TYAAPI+VNIEY+ GS
Sbjct: 90 SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 149
Query: 483 HGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 662
HG+KA K +VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYF+IKGTEKV+L
Sbjct: 150 HGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLL 209
Query: 663 IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 842
IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L++F K+PI+IV
Sbjct: 210 IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIV 269
Query: 843 LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 1022
LKAMGMESDQE+VQM+GRDPR+S LLPSIE+CV E V+TQ QAL++LE KVKK+ Y T
Sbjct: 270 LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTP 329
Query: 1023 YEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 1202
EK+GR LSILRD FLA+VPV NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKR
Sbjct: 330 PEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKR 389
Query: 1203 LELSGQMLSLLFEDLFKTMNDEARK 1277
LELSGQ++SLLFEDLFKTM EA K
Sbjct: 390 LELSGQLISLLFEDLFKTMLSEAIK 414
>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
RPC2 [Arabidopsis thaliana]
Length = 1161
Score = 557 bits (1435), Expect = e-156
Identities = 275/385 (71%), Positives = 325/385 (84%)
Frame = +3
Query: 123 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 302
DL + IDK+ L+AP+K+ +KF L+PEFLKVRGLVKQHLDSFNYF+ I KIV+AN
Sbjct: 9 DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 68
Query: 303 DLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 482
ITS +DPSIYLR+K V +G PS++ E + PH CR++D+TYAAPI+VNIEY+ GS
Sbjct: 69 SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 128
Query: 483 HGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 662
HG+KA K +VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYF+IKGTEKV+L
Sbjct: 129 HGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLL 188
Query: 663 IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 842
IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L++F K+PI+IV
Sbjct: 189 IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIV 248
Query: 843 LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 1022
LKAMGMESDQE+VQM+GRDPR+S LLPSIE+CV E V+TQ QAL++LE KVKK+ Y T
Sbjct: 249 LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTP 308
Query: 1023 YEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 1202
EK+GR LSILRD FLA+VPV NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKR
Sbjct: 309 PEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKR 368
Query: 1203 LELSGQMLSLLFEDLFKTMNDEARK 1277
LELSGQ++SLLFEDLFKTM EA K
Sbjct: 369 LELSGQLISLLFEDLFKTMLSEAIK 393
>gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]
Length = 786
Score = 556 bits (1433), Expect = e-156
Identities = 282/399 (70%), Positives = 332/399 (83%), Gaps = 9/399 (2%)
Frame = +3
Query: 108 SALFNDLQENGLD-------IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYF 266
+A ND E G D IDKQ LAAP+K AV+K+ LLPEFLKVRGLVKQHLDSFNYF
Sbjct: 49 TAFLND--ERGRDGTILSPAIDKQFLAAPIKRAVDKYQLLPEFLKVRGLVKQHLDSFNYF 106
Query: 267 VRTQIKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAA 446
V T+IKKIV++N I S +DPSIYLR+ DV IG PS+ +DGV EKL P CR+SDLTYAA
Sbjct: 107 VNTEIKKIVRSNSRIVSSVDPSIYLRFTDVRIGEPSVTMDGVSEKLDPQTCRLSDLTYAA 166
Query: 447 PIYVNIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGG 626
PI ++EYI GSH K K DV+IGRMPIMLRSCCC+LYGKDE EL++ GECPLDPGG
Sbjct: 167 PIKADVEYIHGSHNQKIQSGKTDVVIGRMPIMLRSCCCVLYGKDEAELAKLGECPLDPGG 226
Query: 627 YFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYL 806
YF++KGTEKV+LIQEQLSKNRIIID DKKG + ASV SS+EA KSKTVI+MEKEK+YL L
Sbjct: 227 YFIVKGTEKVLLIQEQLSKNRIIIDTDKKGNINASVTSSSEAIKSKTVIQMEKEKLYLML 286
Query: 807 NQFAT-KVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEF 983
NQF+T K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LL+PS+E+C KE ++TQ QAL +
Sbjct: 287 NQFSTKKIPIMVVIKAMGMESDQEVVQMLGRDPRYSALLMPSLEECGKEGIYTQEQALGY 346
Query: 984 LEQKVKKLPY-STTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILN 1160
LE KVKK + S + EK+ RV++IL+D FLANV V NNFRPKC+YVAVM+RR+M+AILN
Sbjct: 347 LESKVKKPMFPSASSEKDDRVMAILKDVFLANVRVHGNNFRPKCIYVAVMIRRIMDAILN 406
Query: 1161 KDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
KDAMDDKDYVGNKRLELSGQ++SLLFEDLFK+M E R+
Sbjct: 407 KDAMDDKDYVGNKRLELSGQLISLLFEDLFKSMITEVRR 445
>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
III subunit, putative [Ricinus communis]
Length = 1139
Score = 552 bits (1423), Expect = e-155
Identities = 282/393 (71%), Positives = 328/393 (83%), Gaps = 2/393 (0%)
Frame = +3
Query: 105 DSALFNDLQENGLD--IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQ 278
DS++ N+ ++N ++ IDKQ L AP+K+AV+KF LLPEFLKVRGLVKQHLDSFNYFV
Sbjct: 7 DSSIGNN-EQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIG 65
Query: 279 IKKIVQANDLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYV 458
IKKIV+AND I S +DP IYLR+KDV IGTPS ++DGV E+L+PH CR+SD TYAAPI V
Sbjct: 66 IKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILV 125
Query: 459 NIEYITGSHGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVI 638
N+EYI GSH K K DV+IGRMPIMLRS C+LYGKDE EL+R GECPLDPGGYFVI
Sbjct: 126 NVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVI 185
Query: 639 KGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFA 818
KGTEKVILIQEQLSKNRIIID DKKG + ASV SSTEATKSKT+I+MEKEK+YL LNQF
Sbjct: 186 KGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFV 245
Query: 819 TKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKV 998
K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE+C +++TQ +ALE+L+
Sbjct: 246 KKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLD--- 302
Query: 999 KKLPYSTTYEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDD 1178
KE R L+ILRD FLANVPV +NNFRPKC+YVAVM+RRMMEA+LNKDAMDD
Sbjct: 303 ---------GKENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDD 353
Query: 1179 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 1277
KDYVGNKRLELSGQ++SLLFEDLFKTM E ++
Sbjct: 354 KDYVGNKRLELSGQLISLLFEDLFKTMITEVQR 386
>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
gi|557099252|gb|ESQ39616.1| hypothetical protein
EUTSA_v10000748mg [Eutrema salsugineum]
Length = 1164
Score = 550 bits (1417), Expect = e-154
Identities = 274/385 (71%), Positives = 322/385 (83%)
Frame = +3
Query: 123 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 302
DL + +D+Q L+AP+K+ +KF L+PEFLKVRGLVKQHLDSFNYFV IKKIV+AN
Sbjct: 9 DLINDDHFVDRQKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRAN 68
Query: 303 DLITSRIDPSIYLRYKDVGIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 482
LITS +DP IYLR+K+V +G PS++ + E++ PH CR++D+TYAAPIYVNIEY GS
Sbjct: 69 SLITSSLDPEIYLRFKEVRVGEPSILNVNMAEEINPHMCRLADMTYAAPIYVNIEYAHGS 128
Query: 483 HGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 662
HG K +VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYFVIKGTEKV+L
Sbjct: 129 HGKTQHSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLL 188
Query: 663 IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 842
IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEK KIYL+L+QF K+PI+IV
Sbjct: 189 IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKGKIYLFLHQFVKKIPIIIV 248
Query: 843 LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 1022
LKAMGMESDQE+VQM+GRDPR+S LLPSIE+CV E V+T+ QAL++LE KVKK Y
Sbjct: 249 LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTRKQALDYLEAKVKKTSYGPP 308
Query: 1023 YEKEGRVLSILRDTFLANVPVRQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 1202
EK+GR L ILRD FLA+VPVR NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKR
Sbjct: 309 PEKDGRALYILRDVFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKR 368
Query: 1203 LELSGQMLSLLFEDLFKTMNDEARK 1277
LELSGQ++SLLFEDLFKTM EA K
Sbjct: 369 LELSGQLISLLFEDLFKTMITEAVK 393