BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00000001
         (3286 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1526   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1514   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1511   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1509   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1509   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1509   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1508   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1504   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1492   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...  1329   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...  1310   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]            1054   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...  1053   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...  1051   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               928   0.0  
gb|AFM77886.1| replicase [Hosta virus X]                              924   0.0  
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   921   0.0  
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   916   0.0  
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 914   0.0  
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   912   0.0  

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1526 bits (3952), Expect = 0.0
 Identities = 746/823 (90%), Positives = 780/823 (94%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTG+ IMPI+D R+LP+A +P HW+ P   K++ TLR+LNRFPTPW PDRAR
Sbjct: 543  ALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRAR 602

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            ARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N   + AISVIHGAGGSGKSQALQTLL
Sbjct: 603  ARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLL 662

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGY
Sbjct: 663  RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGY 722

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            IEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSK
Sbjct: 723  IEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSK 782

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 783  FLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 842

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 843  RVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 902

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEFSA               PVE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ 
Sbjct: 903  DKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQT 962

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LP
Sbjct: 963  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLP 1022

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
            KEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1023 KEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1082

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+Y
Sbjct: 1083 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSY 1142

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI
Sbjct: 1143 WDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1202

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIA
Sbjct: 1203 MRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIA 1262

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1263 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1322

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGD+L DLLSPRQAHLHQVTVRDLVKFGGSPFL
Sbjct: 1323 YSLDAKLAYSLGDELHDLLSPRQAHLHQVTVRDLVKFGGSPFL 1365


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1514 bits (3919), Expect = 0.0
 Identities = 745/823 (90%), Positives = 773/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRAR
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRAR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  FLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ 
Sbjct: 915  DKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNY 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1511 bits (3911), Expect = 0.0
 Identities = 741/823 (90%), Positives = 772/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P + ++++TLRS NR+PTPW PDR+R
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQTML EN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  FLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF   HGHTNCVQ 
Sbjct: 915  DKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 NEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNY 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1377


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1509 bits (3906), Expect = 0.0
 Identities = 743/823 (90%), Positives = 771/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRAR
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRAR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  FLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ 
Sbjct: 915  DKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN 
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNC 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1509 bits (3906), Expect = 0.0
 Identities = 743/823 (90%), Positives = 771/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRAR
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRAR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  FLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ 
Sbjct: 915  DKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN 
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNC 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1509 bits (3906), Expect = 0.0
 Identities = 743/823 (90%), Positives = 771/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRAR
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRAR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  FLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ 
Sbjct: 915  DKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN 
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNC 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1508 bits (3905), Expect = 0.0
 Identities = 742/823 (90%), Positives = 771/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRAR
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRAR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
             LANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  LLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ 
Sbjct: 915  DKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNY 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1504 bits (3893), Expect = 0.0
 Identities = 740/823 (89%), Positives = 770/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALEIQTDPSTGE+IMPI+D R+LP+A    HW  P ++++L+TLRSLNR+PTPW PDRAR
Sbjct: 555  ALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRAR 614

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN   NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615  AKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLL 674

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675  RQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK
Sbjct: 735  LEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSK 794

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795  FLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP 854

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855  RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 914

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKIEEF+A               PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ 
Sbjct: 915  DKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQT 974

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNY 1154

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ N
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDN 1334

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1492 bits (3863), Expect = 0.0
 Identities = 732/823 (88%), Positives = 768/823 (93%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            ALE+Q DPSTGE+IMPI+D ++LP+ATLP HW    L ++L+TLRSLNRFPTPW PDR R
Sbjct: 560  ALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTR 619

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            ARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN    LAISVIHGAGGSGKSQALQTLL
Sbjct: 620  ARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLL 679

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            RQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY
Sbjct: 680  RQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGY 739

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S  SRYYINAT RNSK
Sbjct: 740  LEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSK 799

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
            FLANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP
Sbjct: 800  FLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAP 859

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            +VQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 860  KVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVRE 919

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKI EF A               PVE+  TTLDDFKE L DKF+REIFT   GHTNCVQ 
Sbjct: 920  DKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQT 979

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LP
Sbjct: 980  DDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLP 1039

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
            KEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1040 KEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1099

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY
Sbjct: 1100 LGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1159

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI
Sbjct: 1160 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1219

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA
Sbjct: 1220 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1279

Query: 1124 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 945
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+AN
Sbjct: 1280 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVAN 1339

Query: 944  YSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            YSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1340 YSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1382


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score = 1329 bits (3439), Expect = 0.0
 Identities = 650/708 (91%), Positives = 675/708 (95%)
 Frame = -3

Query: 2939 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 2760
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 2759 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 2580
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 2579 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 2400
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 2399 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 2220
            GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 2219 SLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 2040
            SLVRED++ EFSA               PVED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 2039 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 1860
            NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301  NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360

Query: 1859 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 1680
            AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361  AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420

Query: 1679 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 1500
            KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421  KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480

Query: 1499 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 1320
            WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481  WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540

Query: 1319 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 1140
            GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541  GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600

Query: 1139 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 960
            KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601  KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660

Query: 959  NVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 661  NVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 708


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score = 1310 bits (3391), Expect = 0.0
 Identities = 643/824 (78%), Positives = 712/824 (86%), Gaps = 1/824 (0%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPG-LSKVLTTLRSLNRFPTPWCPDRA 3108
            A EIQTDP     IMPI+D++ LP  T  E+ +      KV+ TL+ LNR PTPW PDR 
Sbjct: 535  ASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRL 594

Query: 3107 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 2928
            RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE     L +SVIHGAGGSGKSQALQT+
Sbjct: 595  RARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTM 654

Query: 2927 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 2748
            LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG
Sbjct: 655  LRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQG 714

Query: 2747 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 2568
            ++EAFA+    L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN 
Sbjct: 715  FLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNV 774

Query: 2567 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 2388
            K LANKLGVYSSN  PL V+YGF+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITA
Sbjct: 775  KELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITA 834

Query: 2387 PRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVR 2208
            P+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVR
Sbjct: 835  PKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVR 894

Query: 2207 EDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQ 2028
            E K+EEF+A               PVE+ + TL   ++SL+DK++REI    HG TNCVQ
Sbjct: 895  EHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQ 954

Query: 2027 GDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKL 1848
             +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AMKL
Sbjct: 955  TEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKL 1014

Query: 1847 PKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKME 1668
            PKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKME
Sbjct: 1015 PKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKME 1074

Query: 1667 KLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN 1488
            KLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N
Sbjct: 1075 KLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRN 1134

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
            +WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+
Sbjct: 1135 HWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLA 1194

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIAYTHTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRI
Sbjct: 1195 IMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRI 1254

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
            ALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+A
Sbjct: 1255 ALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVA 1314

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            NYSLDAK+AYSLGDDLQDLLSP QAHLHQVTVRDL KFGGSPFL
Sbjct: 1315 NYSLDAKMAYSLGDDLQDLLSPEQAHLHQVTVRDLTKFGGSPFL 1358


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score = 1054 bits (2726), Expect = 0.0
 Identities = 535/824 (64%), Positives = 618/824 (75%), Gaps = 1/824 (0%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRA 3108
            A EIQ  P    VIMPI++ V  LP + +  H        V+  L  L+R PTPW P   
Sbjct: 567  AREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPL 620

Query: 3107 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 2928
            RAR++TSD+KN RTG  L +E+ TWKETQT+  E +   + +SVIHG GGSGKS A Q L
Sbjct: 621  RARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQEL 680

Query: 2927 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 2748
            LRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T+ERAF    SPVV+FDDYGKLP G
Sbjct: 681  LRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAG 740

Query: 2747 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 2568
            YIEA+      +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F  L RYYINATHRN 
Sbjct: 741  YIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNK 800

Query: 2567 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 2388
            + LANKL VYS      K+T GFQP   +HLLVPSL+KK+A+ + GHKVSTYAGCQGITA
Sbjct: 801  RDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITA 860

Query: 2387 PRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVR 2208
            P++QILLDNDT MC+KEVLYTALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VR
Sbjct: 861  PKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVR 920

Query: 2207 EDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQ 2028
            E+ I                    PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ
Sbjct: 921  EEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQ 980

Query: 2027 GDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKL 1848
              +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM L
Sbjct: 981  TQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTL 1040

Query: 1847 PKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKME 1668
            P+E   FSEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKME
Sbjct: 1041 PEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKME 1100

Query: 1667 KLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN 1488
            KLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+ L PN+I INCE TP+DLSR++ N
Sbjct: 1101 KLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQN 1160

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
            YWDF   SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L 
Sbjct: 1161 YWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLG 1220

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +
Sbjct: 1221 IMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSL 1280

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
            AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     
Sbjct: 1281 ALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAG 1338

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            NY  D  LAY+L D L ++LSP QA LHQ TVR LVK     +L
Sbjct: 1339 NYERDVGLAYALKDSLYEILSPEQAELHQETVRTLVKLTKGTYL 1382


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score = 1053 bits (2724), Expect = 0.0
 Identities = 531/828 (64%), Positives = 632/828 (76%), Gaps = 5/828 (0%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 3105
            A E Q  P T  +IMPI+D+    K  +P H       ++L  L++L+R PT W PD  R
Sbjct: 634  AKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMPTLWTPDTLR 689

Query: 3104 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 2925
            A++FTSD+KN RTGK L +E+Q+WKE QT+  ++    + +SVIHGAGGSGKS ALQ LL
Sbjct: 690  AKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLL 749

Query: 2924 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 2745
            R +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I DDYGKLPQGY
Sbjct: 750  RDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGY 809

Query: 2744 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 2565
            +EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYYINATHRN+K
Sbjct: 810  VEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAK 869

Query: 2564 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2385
             LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++AGHK STYAGCQGITA 
Sbjct: 870  KLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITAR 929

Query: 2384 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2205
            ++QILLD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEKLEATPYLKTFLS+VRE
Sbjct: 930  KLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVRE 989

Query: 2204 DKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2025
            DKI E+                 PVE+  T L++F E L+ K EREIF E+HGHTNCVQ 
Sbjct: 990  DKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNESHGHTNCVQT 1049

Query: 2024 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 1845
            D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GDILW NY +AM LP
Sbjct: 1050 DNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLP 1109

Query: 1844 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1665
            ++   F E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLKSQWVKKMEK
Sbjct: 1110 EDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEK 1168

Query: 1664 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1485
            LGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE+TP DLS W LNY
Sbjct: 1169 LGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNY 1228

Query: 1484 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1305
            W+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSI
Sbjct: 1229 WNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSI 1288

Query: 1304 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1125
            MRLTGE  TFDANTECNIAYTHTRF+IPEG AQ     D A+   C EKPSF L+++ ++
Sbjct: 1289 MRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELS 1343

Query: 1124 LQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 960
            L+      KP    Q  G+WAEFCGYLITPKGLIKDPLKL AS  LAK + K      + 
Sbjct: 1344 LKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELD 1399

Query: 959  NVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            N + NY+ D KLAY LGDDL +LL+P QA LHQVTVRD++K G S  L
Sbjct: 1400 NCLENYARDMKLAYDLGDDLLELLTPEQAQLHQVTVRDMIKLGASDIL 1447


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score = 1051 bits (2717), Expect = 0.0
 Identities = 534/824 (64%), Positives = 617/824 (74%), Gaps = 1/824 (0%)
 Frame = -3

Query: 3284 ALEIQTDPSTGEVIMPISD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRA 3108
            A EIQ  P    VIMPI++ V  LP + +  H        V+  L  L+R PTPW P   
Sbjct: 567  AREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPL 620

Query: 3107 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 2928
            RAR++TSD+KN RTG  L +E+ TWKETQT+  E +   + +SVIHG GGSGKS A Q L
Sbjct: 621  RARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQEL 680

Query: 2927 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 2748
            LRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T+ERAF    SPVV+FDDYGKLP G
Sbjct: 681  LRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAG 740

Query: 2747 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 2568
            YIEA+      +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F  L RYYINATHRN 
Sbjct: 741  YIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNK 800

Query: 2567 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 2388
            + LANKL VYS      K+T GFQP   +HLLVPSL+KK+A+ + GHKVSTYAGCQGITA
Sbjct: 801  RDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITA 860

Query: 2387 PRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVR 2208
            P++QILLDNDT MC+KEVLYTALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VR
Sbjct: 861  PKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVR 920

Query: 2207 EDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQ 2028
            E+ I                    PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ
Sbjct: 921  EEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQ 980

Query: 2027 GDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKL 1848
              +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM L
Sbjct: 981  TQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTL 1040

Query: 1847 PKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKME 1668
            P+E   FSEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKME
Sbjct: 1041 PEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKME 1100

Query: 1667 KLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN 1488
            KLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ N
Sbjct: 1101 KLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQN 1160

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
            YWDF   SYANDFTAFDQSQD AMLQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L 
Sbjct: 1161 YWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLG 1220

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +
Sbjct: 1221 IMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSL 1280

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
            AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     
Sbjct: 1281 ALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAG 1338

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            NY  D  LAY+L D L ++LSP QA LHQ TVR LVK     +L
Sbjct: 1339 NYERDVGLAYALKDSLYEILSPEQAELHQETVRTLVKLTKGAYL 1382


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  928 bits (2399), Expect = 0.0
 Identities = 464/816 (56%), Positives = 588/816 (72%), Gaps = 3/816 (0%)
 Frame = -3

Query: 3254 GEVIMPISDVRDLPK--ATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDV 3081
            G++I PI D + LPK    LPE         +L  L+  +R+P P+  D  + RAF SDV
Sbjct: 865  GQLIFPIKDNKSLPKYEGRLPE-------PHLLEQLKEASRYPCPYRIDHKQGRAFASDV 917

Query: 3080 KNSRTGKALHRETQTWKETQTMLTENVTAN-LAISVIHGAGGSGKSQALQTLLRQNPDLP 2904
            KN+RTG    ++   WKE  T + E+     +A++VIHGAGGSGKSQ LQ  L +NP+  
Sbjct: 918  KNNRTGSLTTKQPDEWKEAFTRMAESPEQRTVALTVIHGAGGSGKSQLLQRYLMENPECK 977

Query: 2903 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMT 2724
            I  +LPTNELR DWL KLP  P    +TFERA +  + PVVIFDDY KLP GYI+AF   
Sbjct: 978  INTILPTNELRNDWLTKLPKMPLTAIQTFERALISPQKPVVIFDDYSKLPAGYIDAFLSL 1037

Query: 2723 HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 2544
            H ++E  ILTGDPRQST HE+NE+A+I+ L+ +T  FS+ SRYYINATHRN + LA  LG
Sbjct: 1038 HKNVEWAILTGDPRQSTFHESNEQAMINHLSKSTEHFSQFSRYYINATHRNKQDLARFLG 1097

Query: 2543 VYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLD 2364
            VYS  +    ++   +P+P  HLLVPSL+KK ++T+ G+K STYAGCQGITA RVQ+LLD
Sbjct: 1098 VYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLD 1157

Query: 2363 NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFS 2184
             DTT+C+ +VLYTALSRAV ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E  
Sbjct: 1158 TDTTLCSDQVLYTALSRAVHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEG 1217

Query: 2183 AXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 2004
                            PVE++  +L+D  E L +K ERE+++  HG++NCVQ DDP  QL
Sbjct: 1218 PKPETPEEPKPATTHFPVENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQL 1277

Query: 2003 FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 1824
            FSHQQAKD+ LLW TI+ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS
Sbjct: 1278 FSHQQAKDQTLLWATIEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFS 1337

Query: 1823 EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 1644
             +LW  CAEEVQ TYL K ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIK
Sbjct: 1338 HELWHACAEEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIK 1397

Query: 1643 PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 1464
            PGQTIASFQQ  VMLYGTMARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P+
Sbjct: 1398 PGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPA 1457

Query: 1463 YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEG 1284
            YANDFT FDQSQDGAMLQFE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGEG
Sbjct: 1458 YANDFTQFDQSQDGAMLQFEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEG 1517

Query: 1283 PTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAY 1104
            PTFDANTECNIA+ HTRF I + TAQ+YAGDD A +++  EK SF  +  ++AL +KP +
Sbjct: 1518 PTFDANTECNIAFNHTRFHISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLF 1577

Query: 1103 TPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKL 924
              Q++G+WAEFCGY ITP GLIK+P KL A+L LA  Q K  +KD ++    +YS D  L
Sbjct: 1578 YKQKKGEWAEFCGYSITPLGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVAL 1631

Query: 923  AYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            AY   D+L ++    Q   HQ TVR LVKFGG+  L
Sbjct: 1632 AYQHKDELYEIFDENQMRDHQTTVRTLVKFGGNEIL 1667


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  924 bits (2387), Expect = 0.0
 Identities = 475/820 (57%), Positives = 578/820 (70%), Gaps = 3/820 (0%)
 Frame = -3

Query: 3278 EIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSK-VLTTLRSLNRFPTPWCPDRARA 3102
            E Q D   G  I PI  ++ +P +      N   +SK +L TLRS+ R PT W PD +RA
Sbjct: 641  ETQMD-GDGTTISPIEQIKSMPVS------NPSSVSKEILETLRSVARAPTSWKPDASRA 693

Query: 3101 RAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLR 2922
            RA+TSD+KN RTG A+H   Q WKET   + EN    L ISVIHGAGGSGKS+ LQ +L 
Sbjct: 694  RAYTSDIKNRRTGAAVHMAPQAWKETMDFIAENAERTLHISVIHGAGGSGKSRCLQEMLN 753

Query: 2921 QNPDLPIE--VVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 2748
            +   L  E  VV PTNELR DW+ KLP + P    TFERA +      VIFDDY KLP G
Sbjct: 754  KFHFLFDETLVVCPTNELRRDWIDKLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLPAG 813

Query: 2747 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 2568
            +IEA+++   ++ELVILTGD +Q++HHE+N+ A+I+ L PA   FS+  RYY+NATHRN 
Sbjct: 814  FIEAYSICQPNVELVILTGDAKQASHHESNDNAMIAGLDPAALEFSKFCRYYLNATHRNP 873

Query: 2567 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 2388
            + LAN LG+YS     LKVT+     P MH+LVPSL+KKA   + GHK STYAGCQG+T 
Sbjct: 874  RNLANALGIYSEKPGNLKVTFTNHLLPEMHILVPSLLKKATLEELGHKCSTYAGCQGVTL 933

Query: 2387 PRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVR 2208
             +VQI LD++TT+C+ EVLYTALSRAV+ I+FVNS   +  FW KLEATPYLKTFL L R
Sbjct: 934  SKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNSGPFNGPFWAKLEATPYLKTFLRLTR 993

Query: 2207 EDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQ 2028
            E+KI E +                PVE          E + +K  REI+ + HGHTNCVQ
Sbjct: 994  EEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQ 1053

Query: 2027 GDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKL 1848
             D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM L
Sbjct: 1054 TDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGL 1113

Query: 1847 PKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKME 1668
            PK+   F  DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKME
Sbjct: 1114 PKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKME 1173

Query: 1667 KLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN 1488
            KLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V  
Sbjct: 1174 KLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKA 1233

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
             WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+
Sbjct: 1234 QWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLA 1293

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+
Sbjct: 1294 IMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRL 1353

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
             L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + 
Sbjct: 1354 TLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVN 1409

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 828
            +Y  D KL+Y LGD LQ+LLS  Q   HQVTVR+LVKF G
Sbjct: 1410 SYGEDLKLSYDLGDHLQELLSESQCRTHQVTVRELVKFAG 1449


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  921 bits (2381), Expect = 0.0
 Identities = 466/812 (57%), Positives = 581/812 (71%)
 Frame = -3

Query: 3251 EVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNS 3072
            ++I PI+ ++      LPE  +    + +LTT+   +R P  +  + +RA+A+ SDV+NS
Sbjct: 897  QLICPITCIKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENS 953

Query: 3071 RTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVV 2892
            RTG  L  +   WKE  TM  E     +A+SVIHGAGGSGKS ALQ L+R+NP+L   VV
Sbjct: 954  RTGLLLRSQPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVV 1013

Query: 2891 LPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2712
             PTNELRLDWL KLP     + +TFE+A   S +  +IF DY KLP GYIE +     + 
Sbjct: 1014 CPTNELRLDWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTA 1073

Query: 2711 ELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSS 2532
             L ILTGDPRQS++HE+NE A+IS+LAP+T+ F +  RYYINATHRN + LA  LGVYS 
Sbjct: 1074 TLAILTGDPRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSE 1133

Query: 2531 NSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTT 2352
             +    ++   +P    HLLVPS++KK  + + G+K STYAGCQGITAPR+QILLD DTT
Sbjct: 1134 RTGLTSISMSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTT 1193

Query: 2351 MCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXX 2172
            +C  EVLYTALSRAV  IHF+N+ A S AFW+KL ATPYLKTFL   RE++++E      
Sbjct: 1194 LCADEVLYTALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQ 1253

Query: 2171 XXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQ 1992
                        PVE++   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQ
Sbjct: 1254 EPTEPEGPTTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQ 1313

Query: 1991 QAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLW 1812
            QAKD+ALLW TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW
Sbjct: 1314 QAKDQALLWATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLW 1373

Query: 1811 TRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQT 1632
              CA+EVQ TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQT
Sbjct: 1374 VACAQEVQGTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQT 1433

Query: 1631 IASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYAND 1452
            IASFQQ AVMLYGTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +YAND
Sbjct: 1434 IASFQQSAVMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYAND 1493

Query: 1451 FTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFD 1272
            FT FDQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFD
Sbjct: 1494 FTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFD 1553

Query: 1271 ANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQE 1092
            ANTECNIAYTH RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+
Sbjct: 1554 ANTECNIAYTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQK 1613

Query: 1091 RGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSL 912
            RG WAEFCGYLITP G++KDP KL A++ LA+ Q K      +     +++LD KLAY  
Sbjct: 1614 RGFWAEFCGYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVH 1667

Query: 911  GDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
             D L ++LS +Q  LHQ+TVR LVK G S  L
Sbjct: 1668 RDALTEVLSEKQQELHQLTVRTLVKSGASEIL 1699


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  916 bits (2368), Expect = 0.0
 Identities = 471/824 (57%), Positives = 583/824 (70%), Gaps = 3/824 (0%)
 Frame = -3

Query: 3278 EIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARAR 3099
            ++Q DP+ G +I PI ++R +PK   PE   E     V  TL  L R PTP+ P+  RAR
Sbjct: 725  QLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTLDGLARAPTPYSPNPIRAR 778

Query: 3098 AFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQ 2919
            A+TSDVKN R G  L ++ + W      L E     LAISVIHGAGGSGKSQALQTL++ 
Sbjct: 779  AYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVIHGAGGSGKSQALQTLIKD 838

Query: 2918 NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIE 2739
            NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   +P+VIFDDYGKLP GY+E
Sbjct: 839  NPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPPTPIVIFDDYGKLPAGYVE 898

Query: 2738 AFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFL 2559
            AF +  ++++L+ILTGD +QS HHE+NE A  S + P     SEL RYYINATHRN K L
Sbjct: 899  AFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEASELCRYYINATHRNKKDL 958

Query: 2558 ANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRV 2379
            ANKLGVYS  +   +VT+G  P PG+H+LVPSL KK AF++ GHKVSTYAGCQGITAP++
Sbjct: 959  ANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEMGHKVSTYAGCQGITAPKI 1018

Query: 2378 QILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDK 2199
            QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+KLE TPYLK FLS +RE+ 
Sbjct: 1019 QILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKKLECTPYLKAFLSTLREEV 1078

Query: 2198 IEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDD 2019
             +                     ED     ++  E + +K EREIF+E HGH+NCVQ +D
Sbjct: 1079 AQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHEREIFSEKHGHSNCVQTED 1138

Query: 2018 PTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKE 1839
            P  Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+  K+ +G++L+ +Y +AM LPK 
Sbjct: 1139 PFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRPVGEVLFESYKRAMHLPKM 1198

Query: 1838 QPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLG 1659
               F EDLW     EVQ TYL K  + IK G  RQSPD+  + I +FLKSQWVKKMEKLG
Sbjct: 1199 PIPFEEDLWNSSMHEVQKTYLSKPENMIKNGMARQSPDYDPNVISLFLKSQWVKKMEKLG 1258

Query: 1658 AKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---N 1488
            A KIKPGQTIASF Q  VML+GTMARYMRR R+   P +I INCE TP+DLS W      
Sbjct: 1259 AIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGG 1318

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
            +W F  PS ANDFTAFDQSQDGAMLQFEILKA++ ++PE +++ YL IK + KIFLGTL+
Sbjct: 1319 HWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLA 1378

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIA+THT+F IPEGTAQ+YAGDD AI  +   +PSF +++ ++
Sbjct: 1379 IMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAGDDSAIDGLPALRPSFKMIEQKL 1438

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
             L++KP    Q++G WAEFCG+ ITPKGLIKDP KLHAS  L K  KK  VK    NV+ 
Sbjct: 1439 TLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLHASWMLEK--KKGNVK----NVLR 1492

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            +Y LD  LAY   D L +LLS  +   H  TVR +VK GG   L
Sbjct: 1493 SYELDLALAYQHKDSLHELLSEEELKYHYETVRSIVKSGGGGVL 1536


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  914 bits (2362), Expect = 0.0
 Identities = 473/824 (57%), Positives = 578/824 (70%), Gaps = 3/824 (0%)
 Frame = -3

Query: 3278 EIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARAR 3099
            ++Q DP+ G +I PI  ++ LPK + PE  N P L K+L       R PTP+ P   RA+
Sbjct: 719  QLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAK 772

Query: 3098 AFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQ 2919
            A++SDVKNSR G  L ++ + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ 
Sbjct: 773  AYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKD 832

Query: 2918 NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIE 2739
            NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIE
Sbjct: 833  NPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIE 892

Query: 2738 AFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFL 2559
            AF+   +S+EL++LTGD +QS HHE+NE A+ S + P T    + SRYYINATHRN + L
Sbjct: 893  AFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDL 952

Query: 2558 ANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRV 2379
            ANKLGVYS  +    +T G  P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRV
Sbjct: 953  ANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRV 1012

Query: 2378 QILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDK 2199
            QILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED 
Sbjct: 1013 QILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDA 1072

Query: 2198 IEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDD 2019
                                 PV+      +D  + + +K EREIF+E HGH+NCVQ +D
Sbjct: 1073 APVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTED 1132

Query: 2018 PTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKE 1839
               Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ +GD+L+  Y +AM LP E
Sbjct: 1133 TFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTE 1192

Query: 1838 QPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLG 1659
               F   LW  C  EVQ TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLG
Sbjct: 1193 PIAFEPQLWESCIHEVQRTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLG 1252

Query: 1658 AKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---N 1488
            A KIKPGQTIASF Q  VML+GTMARYMRR R+   P NI INCE TP+DL+ W +    
Sbjct: 1253 ALKIKPGQTIASFHQATVMLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAG 1312

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
             W F+ PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+
Sbjct: 1313 QWKFAGPSLANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLT 1372

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIA+TH +F+IP+GTAQ+YAGDD AI    P + SF L++ ++
Sbjct: 1373 IMRLTGEGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKL 1432

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
             L++KPA   QE+G WAEFCGY ITPKG IKDP KLHASL L   +KK G    + NV+ 
Sbjct: 1433 KLRSKPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLR 1486

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            +Y LD  LAY   D+L +LLS  +  LH  TVR LVK GG   L
Sbjct: 1487 SYELDLALAYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  912 bits (2357), Expect = 0.0
 Identities = 471/824 (57%), Positives = 574/824 (69%), Gaps = 3/824 (0%)
 Frame = -3

Query: 3278 EIQTDPSTGEVIMPISDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARAR 3099
            ++Q DP+ G +I PI  ++ LPK + PE  N P L K+L    S  R PTP+ P   RA+
Sbjct: 719  QLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLN---SQARAPTPFSPSPIRAK 772

Query: 3098 AFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQ 2919
            A++SDVKNSR G  L ++ + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ 
Sbjct: 773  AYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKD 832

Query: 2918 NPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIE 2739
            NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIE
Sbjct: 833  NPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIE 892

Query: 2738 AFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFL 2559
            AF+   +S EL++LTGD +QS HHE+NE A+ S + P T    + SRYYINATHRN + L
Sbjct: 893  AFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDL 952

Query: 2558 ANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRV 2379
            ANKLGVYS  +    +T G  P PG+HLLVPSL KK AF++ GHK STYAGCQG+TAPRV
Sbjct: 953  ANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRV 1012

Query: 2378 QILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDK 2199
            QILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED 
Sbjct: 1013 QILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDA 1072

Query: 2198 IEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDD 2019
                                 PV+      +D  + + +K EREIF+E HGH+NCVQ +D
Sbjct: 1073 APVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTED 1132

Query: 2018 PTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKE 1839
               Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  KK +GD+L+  Y +AM LP E
Sbjct: 1133 TFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTE 1192

Query: 1838 QPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLG 1659
               F   LW  C  E+Q TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLG
Sbjct: 1193 PIAFEPQLWESCIHEIQRTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLG 1252

Query: 1658 AKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---N 1488
            A KIKPGQTIASF Q  VML+GTMARYMRR R+   P NI INCE TP+DL+ W +    
Sbjct: 1253 ALKIKPGQTIASFHQATVMLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGPAG 1312

Query: 1487 YWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLS 1308
             W F+ PS ANDFTAFDQSQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+
Sbjct: 1313 QWKFAGPSLANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLA 1372

Query: 1307 IMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRI 1128
            IMRLTGEGPTFDANTECNIA+TH +F+IP+GTAQ+YAGDD AI      + SF L++ ++
Sbjct: 1373 IMRLTGEGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPTVRESFRLVEQKL 1432

Query: 1127 ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIA 948
             L++KPA   QE+G WAEFCGY ITPKG IKDP KLHASL L K       K  + NV+ 
Sbjct: 1433 KLRSKPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEKK------KGNLRNVLR 1486

Query: 947  NYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 816
            +Y LD  LAY   D+L +LLS  +  LH  TVR LVK GG   L
Sbjct: 1487 SYELDLALAYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530