BLASTX nr result
ID: Rehmannia22_contig00040559
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00040559
(397 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN59936.1| hypothetical protein VITISV_001878 [Vitis vinifera] 132 4e-35
emb|CAN64225.1| hypothetical protein VITISV_016222 [Vitis vinifera] 127 7e-34
ref|XP_004300707.1| PREDICTED: uncharacterized mitochondrial pro... 125 4e-33
emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera] 120 5e-31
ref|XP_004308267.1| PREDICTED: uncharacterized mitochondrial pro... 119 9e-31
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 113 2e-29
ref|XP_006580800.1| PREDICTED: uncharacterized mitochondrial pro... 112 2e-29
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 116 2e-29
ref|XP_006582507.1| PREDICTED: uncharacterized mitochondrial pro... 116 2e-29
gb|AAF79259.1|AC023279_8 F12K21.14 [Arabidopsis thaliana] 112 3e-29
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 114 3e-29
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 111 6e-29
ref|XP_006588017.1| PREDICTED: uncharacterized mitochondrial pro... 107 1e-28
ref|XP_004310176.1| PREDICTED: uncharacterized protein LOC101315... 114 2e-28
emb|CAN64628.1| hypothetical protein VITISV_039432 [Vitis vinifera] 120 2e-28
emb|CAA19695.1| putative LTR retrotransposon (fragment) [Arabido... 113 2e-28
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 108 3e-28
emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsi... 117 3e-28
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi... 111 4e-28
emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera] 116 4e-28
>emb|CAN59936.1| hypothetical protein VITISV_001878 [Vitis vinifera]
Length = 1031
Score = 132 bits (331), Expect(2) = 4e-35
Identities = 62/107 (57%), Positives = 79/107 (73%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L LL+ETGY+GCKP+ TPM + D L DP+ YRRLIG+++YLTITRP+L YS+
Sbjct: 752 LELLSETGYLGCKPAKTPMQLNMQLSQDDGELLTDPNMYRRLIGKLIYLTITRPNLTYSM 811
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
L Q LS+P HL A +RIL+YIKGSPGKG+F+S+ S+L LK FS
Sbjct: 812 NKLIQFLSQPRRPHLQAVYRILQYIKGSPGKGIFFSASSSLQLKAFS 858
Score = 42.0 bits (97), Expect(2) = 4e-35
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+E+AR+AKG+ + QRKYAL
Sbjct: 726 GNLKYFLGLEVARSAKGILINQRKYAL 752
>emb|CAN64225.1| hypothetical protein VITISV_016222 [Vitis vinifera]
Length = 987
Score = 127 bits (320), Expect(2) = 7e-34
Identities = 60/107 (56%), Positives = 77/107 (71%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L LL+ETGY+GCKP+ TPM + D L DP+ YRRLIG+++YLT TRP+L YS+
Sbjct: 746 LELLSETGYLGCKPAKTPMQPNMQLSQDDGELLTDPNMYRRLIGKLIYLTFTRPNLTYSV 805
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
LSQ L + HL A +RIL+YIKGSPGKG+F+S+ S+L LK FS
Sbjct: 806 NKLSQFLCQLRRPHLQAIYRILQYIKGSPGKGIFFSASSSLQLKAFS 852
Score = 42.0 bits (97), Expect(2) = 7e-34
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+E+AR+AKG+ + QRKYAL
Sbjct: 720 GNLKYFLGLEVARSAKGILINQRKYAL 746
>ref|XP_004300707.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Fragaria vesca subsp. vesca]
Length = 316
Score = 125 bits (313), Expect(2) = 4e-33
Identities = 57/106 (53%), Positives = 76/106 (71%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L +L +TG++G KPSS P++ L +D LQDPSQYRRL+GR++YLTITRPDL Y++
Sbjct: 28 LEILEDTGFLGVKPSSFPVEQNLSLTQADGVLLQDPSQYRRLVGRLIYLTITRPDLVYAV 87
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGF 394
LSQ + KP HL AAH++LRYIK +PG+G+ SS L L+ F
Sbjct: 88 HILSQFMDKPRQPHLKAAHKVLRYIKQTPGQGVLLSSTGPLELRAF 133
Score = 42.0 bits (97), Expect(2) = 4e-33
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYALVI 87
G LKY LGIE+AR+ KG+ L QRKYAL I
Sbjct: 2 GQLKYFLGIEVARSKKGIVLCQRKYALEI 30
>emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera]
Length = 660
Score = 120 bits (302), Expect(2) = 5e-31
Identities = 57/106 (53%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LLTETGYIGCKPSSTPMDSKLDFLNSDDTPL-QDPSQYRRLIGRMVYLTITRPDLAYSIQ 259
+L ++G+ KP PM+S L +D +PL +P+ YRRLIGR++YLTITRPDLAY++Q
Sbjct: 549 VLKDSGFFSSKPVGFPMESNLKLTANDSSPLLSNPASYRRLIGRLLYLTITRPDLAYAVQ 608
Query: 260 TLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
LSQ +S P+ +HL AA R+LRYIK +PG+GLF + S LHLK +S
Sbjct: 609 ALSQFMSNPHSTHLQAAERVLRYIKATPGQGLFLKASSYLHLKAYS 654
Score = 39.3 bits (90), Expect(2) = 5e-31
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LGIE+AR+AKG+ L Q+KY +
Sbjct: 521 GELKYFLGIEVARSAKGIVLSQQKYTM 547
>ref|XP_004308267.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Fragaria vesca subsp. vesca]
Length = 235
Score = 119 bits (299), Expect(2) = 9e-31
Identities = 56/106 (52%), Positives = 74/106 (69%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L +L +TG++ KPS P+D L + S+ + L DPSQYRRL+GRM+YLTITRPDLAY++
Sbjct: 72 LEMLEDTGFLASKPSRFPVDHNLTLMQSEGSLLADPSQYRRLVGRMIYLTITRPDLAYAV 131
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGF 394
LSQ + KP HL AAH +LRY+KG+ G+G+ S L L GF
Sbjct: 132 HVLSQFMDKPRQPHLDAAHLVLRYLKGTLGQGILLPSTGKLELTGF 177
Score = 39.7 bits (91), Expect(2) = 9e-31
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LGIE+AR+ G+ L QRKYAL
Sbjct: 46 GNLKYFLGIEVARSRHGIALCQRKYAL 72
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 113 bits (282), Expect(2) = 2e-29
Identities = 54/106 (50%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LLTETGYIGCKPSSTPMDSKLDFLNSDDTPL-QDPSQYRRLIGRMVYLTITRPDLAYSIQ 259
+L ++G+ G KP PM+S L +D +PL DP+ Y+RLIG+++YLTITR DLAY +Q
Sbjct: 867 VLKDSGFFGSKPIGFPMESSLKLTANDSSPLLSDPASYKRLIGKLLYLTITRLDLAYXVQ 926
Query: 260 TLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
L+Q +S P+ +HL AA R+LRYIK + G+GLF + S LHLK +S
Sbjct: 927 ALNQFMSNPHSTHLQAAERVLRYIKATLGQGLFLKASSDLHLKAYS 972
Score = 42.0 bits (97), Expect(2) = 2e-29
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY +GIE+AR+AKG+ L QRKYAL
Sbjct: 839 GELKYFVGIEVARSAKGIVLSQRKYAL 865
>ref|XP_006580800.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 284
Score = 112 bits (281), Expect(2) = 2e-29
Identities = 54/107 (50%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Frame = +2
Query: 83 LLTETGYIGCKPSSTPMDSKLDFLNSDDTPL--QDPSQYRRLIGRMVYLTITRPDLAYSI 256
+L+++G +GCKP+STPMD + + +PL + S YRRLIG+++YLT TR D+AY++
Sbjct: 49 ILSDSGMLGCKPNSTPMDYSMKLQINSGSPLLAESASSYRRLIGKLIYLTNTRLDIAYAV 108
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
Q LSQ +S P HL AA RILRY+KG+PG GLFY++ L+ FS
Sbjct: 109 QQLSQYMSTPTNIHLQAAFRILRYLKGTPGSGLFYAATGTPQLRAFS 155
Score = 42.4 bits (98), Expect(2) = 2e-29
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYALVI 87
G LK+ LG+EIART+ G+HL QRKY L I
Sbjct: 21 GDLKFFLGLEIARTSDGIHLCQRKYTLDI 49
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1433
Score = 116 bits (291), Expect(2) = 2e-29
Identities = 51/114 (44%), Positives = 79/114 (69%)
Frame = +2
Query: 56 IFTKENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITR 235
I ++ +L LL+ TG++G KPSS P+D + D PL D + YR+L+G+++YL ITR
Sbjct: 1164 ICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITR 1223
Query: 236 PDLAYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
PD+AY++ TL Q P HL+A H++LRY+KG+ G+GLFYS++ L+G++
Sbjct: 1224 PDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYT 1277
Score = 38.1 bits (87), Expect(2) = 2e-29
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G KY LGIEIAR+ KG+ + QRKY L
Sbjct: 1145 GAAKYFLGIEIARSEKGISICQRKYIL 1171
>ref|XP_006582507.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 288
Score = 116 bits (291), Expect(2) = 2e-29
Identities = 58/105 (55%), Positives = 72/105 (68%)
Frame = +2
Query: 83 LLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSIQT 262
LL ++G +GCKPSSTPMDS L N L DP YRRL+GR+VYL T PD+A++ Q
Sbjct: 128 LLKDSGMLGCKPSSTPMDSSLRLHNDSFGFLDDPLSYRRLVGRLVYLISTHPDIAFATQQ 187
Query: 263 LSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
LSQ +SKP +H AAA R+L+Y+KG P KGLF+ HL GFS
Sbjct: 188 LSQFMSKPTKAHHAAAVRVLQYLKGCPDKGLFFPWTCFPHLLGFS 232
Score = 38.1 bits (87), Expect(2) = 2e-29
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LGIE+A + KG+ L QRKY L
Sbjct: 100 GKLKYFLGIEVAHSDKGISLCQRKYCL 126
>gb|AAF79259.1|AC023279_8 F12K21.14 [Arabidopsis thaliana]
Length = 427
Score = 112 bits (281), Expect(2) = 3e-29
Identities = 52/107 (48%), Positives = 73/107 (68%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L LLT G + CKPS+ PM L +D L+D YR L+GR++YLTITRPD+ +++
Sbjct: 168 LELLTSAGMLDCKPSTIPMTPNLRLSKADGVLLEDAEMYRSLVGRLMYLTITRPDITFAV 227
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
L Q S P SHL A +++L+YIKG+ G+GLFYS++S L LKG++
Sbjct: 228 NKLCQFSSAPRTSHLTAVYKVLQYIKGTVGQGLFYSADSDLTLKGYT 274
Score = 41.6 bits (96), Expect(2) = 3e-29
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+E+ART +G+ L QRKYAL
Sbjct: 142 GPLKYFLGLEVARTTEGISLCQRKYAL 168
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 114 bits (284), Expect(2) = 3e-29
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = +2
Query: 56 IFTKENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITR 235
I ++ L LL TG + CKP S PM L D ++D QYRR++G+++YLTITR
Sbjct: 1187 ICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITR 1246
Query: 236 PDLAYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
PD+ +++ L Q S P +HL AA+R+L+YIKG+ G+GLFYS+ S L LKGF+
Sbjct: 1247 PDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFA 1300
Score = 40.0 bits (92), Expect(2) = 3e-29
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+E+ART G+ + QRKYAL
Sbjct: 1168 GDLKYFLGLEVARTTAGISICQRKYAL 1194
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 111 bits (277), Expect(2) = 6e-29
Identities = 51/107 (47%), Positives = 73/107 (68%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L LLT + CKPSS PM + +D L+D YRRL+G+++YLTITRPD+ +++
Sbjct: 1201 LELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAV 1260
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
L Q S P +HLAA +++L+YIKG+ G+GLFYS+E L LKG++
Sbjct: 1261 NKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYT 1307
Score = 42.0 bits (97), Expect(2) = 6e-29
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+E+ART++G+ L QRKYAL
Sbjct: 1175 GPLKYFLGLEVARTSEGISLSQRKYAL 1201
>ref|XP_006588017.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 272
Score = 107 bits (268), Expect(2) = 1e-28
Identities = 53/113 (46%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Frame = +2
Query: 65 KENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQ--YRRLIGRMVYLTITRP 238
++ +L +L+++G + +P+STPMD S TPL + S YRRLIGR++YLT TRP
Sbjct: 99 RKYVLDILSDSGMLASRPASTPMDYSTRLTASTGTPLSETSSSSYRRLIGRLIYLTNTRP 158
Query: 239 DLAYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
D+ + +Q LSQ ++ P +H AA RILRY+KGSPG G+F ++ L LK FS
Sbjct: 159 DITHVVQQLSQYMAHPTSAHSQAAFRILRYLKGSPGSGIFLAAHGTLQLKAFS 211
Score = 44.3 bits (103), Expect(2) = 1e-28
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYALVI 87
GTLK+ LG+E+ART+ G+HL QRKY L I
Sbjct: 77 GTLKFFLGLEVARTSHGIHLSQRKYVLDI 105
>ref|XP_004310176.1| PREDICTED: uncharacterized protein LOC101315202 [Fragaria vesca
subsp. vesca]
Length = 1149
Score = 114 bits (286), Expect(2) = 2e-28
Identities = 49/104 (47%), Positives = 75/104 (72%)
Frame = +2
Query: 83 LLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSIQT 262
+L E G +G KP++ PM+ L + L+DP++YRRL+G+++YLTI+RP++ YS+ T
Sbjct: 620 ILEEAGLLGTKPATVPMEPDLVLSETGSEALKDPTRYRRLVGKLIYLTISRPEITYSVNT 679
Query: 263 LSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGF 394
LSQ + P + HL AAHR+L+Y+K +PG+GL + S S LHL G+
Sbjct: 680 LSQFMQIPKLHHLKAAHRLLQYLKAAPGQGLLFPSNSPLHLIGY 723
Score = 37.0 bits (84), Expect(2) = 2e-28
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYALVI 87
G LKY LGIE+AR+ G+ + QRKY L I
Sbjct: 592 GPLKYFLGIEVARSQAGITVCQRKYTLDI 620
>emb|CAN64628.1| hypothetical protein VITISV_039432 [Vitis vinifera]
Length = 578
Score = 120 bits (302), Expect(2) = 2e-28
Identities = 60/111 (54%), Positives = 80/111 (72%)
Frame = +2
Query: 65 KENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDL 244
++ +L +L +TG G KP++ PM+S L +D +DPS YRRLIGR++YLT+TRPDL
Sbjct: 281 RKXILDILKDTGLTGSKPAAFPMESTLKLSANDTNFYEDPSSYRRLIGRLLYLTLTRPDL 340
Query: 245 AYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
AY +Q LSQLL+KP VSH A R+LRY+K + G+GLF+S S LKGFS
Sbjct: 341 AYYVQVLSQLLAKPAVSHHQATIRVLRYLKATLGQGLFFSFSSDFQLKGFS 391
Score = 30.8 bits (68), Expect(2) = 2e-28
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYALVI 87
G LK LG+E+AR+ G+ L QRK L I
Sbjct: 259 GPLKCFLGLEVARSKTGISLCQRKXILDI 287
>emb|CAA19695.1| putative LTR retrotransposon (fragment) [Arabidopsis thaliana]
gi|7268774|emb|CAB78980.1| putative LTR retrotransposon
(fragment) [Arabidopsis thaliana]
Length = 306
Score = 113 bits (283), Expect(2) = 2e-28
Identities = 50/114 (43%), Positives = 77/114 (67%)
Frame = +2
Query: 56 IFTKENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITR 235
I ++ +L LL+ TG++G KPSS P+D + D PL D + YR+L+G+++YL ITR
Sbjct: 37 ICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITR 96
Query: 236 PDLAYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
PD+AY++ TL Q P HL A H++LRY+KG+ G+GLFY ++ L+G++
Sbjct: 97 PDIAYAVNTLCQFSHAPTSVHLNAVHKVLRYLKGTVGQGLFYPADDKFDLRGYT 150
Score = 38.1 bits (87), Expect(2) = 2e-28
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G KY LGIEIAR+ KG+ + QRKY L
Sbjct: 18 GAAKYFLGIEIARSEKGISICQRKYIL 44
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 108 bits (270), Expect(2) = 3e-28
Identities = 53/114 (46%), Positives = 75/114 (65%)
Frame = +2
Query: 56 IFTKENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITR 235
I ++ L LL ETG +GCKPSS PMD + F + + YRRLIGR++YL ITR
Sbjct: 1048 ISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITR 1107
Query: 236 PDLAYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
PD+ +++ L+Q P +HL A ++IL+YIKG+ G+GLFYS+ S L LK ++
Sbjct: 1108 PDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYA 1161
Score = 42.4 bits (98), Expect(2) = 3e-28
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+EI R+ KG+H+ QRKYAL
Sbjct: 1029 GELKYFLGLEIVRSDKGIHISQRKYAL 1055
>emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|7267797|emb|CAB81200.1| putative retrotransposon
polyprotein [Arabidopsis thaliana]
Length = 1203
Score = 117 bits (293), Expect(2) = 3e-28
Identities = 55/105 (52%), Positives = 72/105 (68%)
Frame = +2
Query: 83 LLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSIQT 262
LL + G GCKPSS PMD L T L + + YR L+GR++YL ITRPD+ +++ T
Sbjct: 781 LLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHT 840
Query: 263 LSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
LSQ LS P H+ AAH++LRY+KG+PG+GL YS+ S L L GFS
Sbjct: 841 LSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFS 885
Score = 33.5 bits (75), Expect(2) = 3e-28
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYA 78
G ++ LG+EIAR+++G+ + QRKYA
Sbjct: 753 GPARFFLGLEIARSSEGISVCQRKYA 778
>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1264
Score = 111 bits (277), Expect(2) = 4e-28
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +2
Query: 77 LLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDLAYSI 256
L LL TG I CK S PM L + D L+D QYRR++G ++YLTITRPD+ +++
Sbjct: 1004 LELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAV 1063
Query: 257 QTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
L Q P +HL AAHR+L+YIKG+ G+GLFYS+ S L LKGF+
Sbjct: 1064 NKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFA 1110
Score = 39.3 bits (90), Expect(2) = 4e-28
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G LKY LG+EI RT G+ L QRKYAL
Sbjct: 978 GDLKYFLGLEITRTEAGISLCQRKYAL 1004
>emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]
Length = 1243
Score = 116 bits (290), Expect(2) = 4e-28
Identities = 53/111 (47%), Positives = 80/111 (72%)
Frame = +2
Query: 65 KENMLLLLTETGYIGCKPSSTPMDSKLDFLNSDDTPLQDPSQYRRLIGRMVYLTITRPDL 244
++ +L LL++ GY+GCK +STPM++ + + L D S YRRL+G+++YLT+TRPD+
Sbjct: 999 RKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLYRRLLGKLLYLTLTRPDI 1058
Query: 245 AYSIQTLSQLLSKPNVSHLAAAHRILRYIKGSPGKGLFYSSESALHLKGFS 397
+Y + LSQ +S+P + HL AA RILRY+KG+PG GLF+ S S L L ++
Sbjct: 1059 SYVVGRLSQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELXLMAYT 1109
Score = 34.3 bits (77), Expect(2) = 4e-28
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 1 GTLKYILGIEIARTAKGVHLYQRKYAL 81
G +KY LG+EIA+++ G+ + QRKY L
Sbjct: 977 GDVKYFLGLEIAKSSTGICVSQRKYVL 1003