BLASTX nr result
ID: Rehmannia22_contig00040173
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00040173
(359 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006340426.1| PREDICTED: pentatricopeptide repeat-containi... 110 2e-22
ref|XP_004251424.1| PREDICTED: pentatricopeptide repeat-containi... 104 1e-20
ref|XP_004293118.1| PREDICTED: pentatricopeptide repeat-containi... 96 5e-18
gb|EPS65182.1| hypothetical protein M569_09592 [Genlisea aurea] 94 2e-17
ref|XP_006481538.1| PREDICTED: pentatricopeptide repeat-containi... 93 3e-17
ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 93 3e-17
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi... 93 3e-17
gb|EOY33313.1| Tetratricopeptide repeat (TPR)-like superfamily p... 91 2e-16
ref|XP_002523876.1| pentatricopeptide repeat-containing protein,... 89 8e-16
gb|EXC37761.1| hypothetical protein L484_001219 [Morus notabilis] 88 1e-15
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi... 87 3e-15
emb|CBI24422.3| unnamed protein product [Vitis vinifera] 87 3e-15
ref|XP_004487456.1| PREDICTED: pentatricopeptide repeat-containi... 84 1e-14
ref|XP_006417992.1| hypothetical protein EUTSA_v10009524mg [Eutr... 79 5e-13
gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya... 77 2e-12
ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata] gi... 77 2e-12
gb|ESW22027.1| hypothetical protein PHAVU_005G120400g [Phaseolus... 77 2e-12
ref|XP_006303598.1| hypothetical protein CARUB_v10011161mg [Caps... 75 7e-12
ref|XP_003596872.1| Pentatricopeptide repeat-containing protein ... 75 9e-12
gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula] 75 9e-12
>ref|XP_006340426.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Solanum tuberosum]
Length = 509
Score = 110 bits (275), Expect = 2e-22
Identities = 54/81 (66%), Positives = 61/81 (75%), Gaps = 7/81 (8%)
Frame = +3
Query: 138 NKNSDSPPEVT-------TASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTL 296
NKNS S T TASWTS IA HC+NGRL +AV +FTRMR SGVEPNH+TFVTL
Sbjct: 28 NKNSASASAATYRSNNDSTASWTSLIARHCKNGRLIEAVSEFTRMRNSGVEPNHITFVTL 87
Query: 297 LSGCAHFPSQGLLLGPSVHGY 359
LSGCAHFP+Q L LG ++HGY
Sbjct: 88 LSGCAHFPAQALSLGSALHGY 108
>ref|XP_004251424.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Solanum lycopersicum]
Length = 507
Score = 104 bits (260), Expect = 1e-20
Identities = 50/85 (58%), Positives = 61/85 (71%)
Frame = +3
Query: 105 HHHRFSFKSSQNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVT 284
H+ + ++ N+DS TASWTS IA HC+NGRL +AV +FTRMR SGVEPNH+T
Sbjct: 27 HNKNTASAATYRSNNDS-----TASWTSLIARHCKNGRLIEAVAEFTRMRNSGVEPNHIT 81
Query: 285 FVTLLSGCAHFPSQGLLLGPSVHGY 359
FVTLLS CAHFP Q L G ++HGY
Sbjct: 82 FVTLLSCCAHFPDQALSFGSALHGY 106
>ref|XP_004293118.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 504
Score = 95.9 bits (237), Expect = 5e-18
Identities = 45/86 (52%), Positives = 57/86 (66%)
Frame = +3
Query: 102 HHHHRFSFKSSQNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHV 281
HH+ S+ + D T WTSSI+ CRNG+L+QAV QF +MR + VEPNH+
Sbjct: 27 HHNKHSVLLKSRKEQIDQ-----TVLWTSSISQRCRNGQLAQAVSQFIQMRRARVEPNHI 81
Query: 282 TFVTLLSGCAHFPSQGLLLGPSVHGY 359
TFVTLLSGCAHFP++ GPS+H Y
Sbjct: 82 TFVTLLSGCAHFPAKAAFFGPSLHAY 107
>gb|EPS65182.1| hypothetical protein M569_09592 [Genlisea aurea]
Length = 579
Score = 93.6 bits (231), Expect = 2e-17
Identities = 44/75 (58%), Positives = 53/75 (70%)
Frame = +3
Query: 135 QNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAH 314
Q +DSP ASWT SI+ C+NGRL +++ F RMR SG+ PN VTFV LLSGC
Sbjct: 27 QRHGNDSP----AASWTRSISRCCKNGRLCESISLFNRMRESGIAPNRVTFVVLLSGCGR 82
Query: 315 FPSQGLLLGPSVHGY 359
FP +GLLLGPS+HGY
Sbjct: 83 FPDRGLLLGPSLHGY 97
>ref|XP_006481538.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Citrus sinensis]
Length = 509
Score = 93.2 bits (230), Expect = 3e-17
Identities = 41/81 (50%), Positives = 58/81 (71%)
Frame = +3
Query: 114 RFSFKSSQNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVT 293
+ S +++ +K++ +P T WTSSI+ HCR+GR+++A +FTRM G PNH+TF+T
Sbjct: 30 QISIQTNNSKSTVNP----TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFIT 85
Query: 294 LLSGCAHFPSQGLLLGPSVHG 356
LLSGCA FPSQ L LG +HG
Sbjct: 86 LLSGCADFPSQCLFLGAMIHG 106
>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 93.2 bits (230), Expect = 3e-17
Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 3 SIPAFTAAPFTIQ---HXXXXXXXXXXXXXXXXXADHHHHRFSFKSSQNKNSDSPPEVTT 173
SIP+ TA P +Q + + HR + S N NS P
Sbjct: 3 SIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHR-NISSKFNPNSVDP----I 57
Query: 174 ASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPSVH 353
WTSS+A +CRNG+LS+A +FTRMR +GVEPNH+TF+TLLS CA FPS+ S+H
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 354 GY 359
GY
Sbjct: 118 GY 119
>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 93.2 bits (230), Expect = 3e-17
Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 3 SIPAFTAAPFTIQ---HXXXXXXXXXXXXXXXXXADHHHHRFSFKSSQNKNSDSPPEVTT 173
SIP+ TA P +Q + + HR + S N NS P
Sbjct: 3 SIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHR-NISSKFNPNSVDP----I 57
Query: 174 ASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPSVH 353
WTSS+A +CRNG+LS+A +FTRMR +GVEPNH+TF+TLLS CA FPS+ S+H
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 354 GY 359
GY
Sbjct: 118 GY 119
>gb|EOY33313.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao]
Length = 509
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +3
Query: 129 SSQNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGC 308
S+ N P SWTSSI+ HCR G++S+A +FTRMR S VEPNH+TFVTLLSGC
Sbjct: 31 SNPNHQISLKPLDHIVSWTSSISRHCRAGQISEAASEFTRMRLSEVEPNHITFVTLLSGC 90
Query: 309 AHFPSQGLLLGPSVHGY 359
A FP + +LG +HGY
Sbjct: 91 ADFPLKSGVLGVLIHGY 107
>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 384
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +3
Query: 108 HHRFSFKSSQNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTF 287
H R + K N++ D T +WTSSI+ HC NG+L +A FT+MR + VEPNH+TF
Sbjct: 43 HPRTNLKHQCNRSID-----LTIAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITF 97
Query: 288 VTLLSGCAHFPSQGLLLGPSVHGY 359
TL+S CA FP QG +GPS+H Y
Sbjct: 98 ATLISFCADFPFQGKSIGPSIHAY 121
>gb|EXC37761.1| hypothetical protein L484_001219 [Morus notabilis]
Length = 508
Score = 88.2 bits (217), Expect = 1e-15
Identities = 49/121 (40%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Frame = +3
Query: 3 SIPAFTAAPFTIQHXXXXXXXXXXXXXXXXXADHHH--HRFSFKSSQNKNSDSPPEVTTA 176
S+PA T P + + H+ H+ ++K P
Sbjct: 2 SLPANTVTPTQLSQPPKPPPLSLPSPTQPFFPNQHYPSHKLTYK----------PIEPVV 51
Query: 177 SWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPSVHG 356
WTSSIA HC+NGR S+A +F+RMR SGVEPNHVTFVTLLSGCA + G S+HG
Sbjct: 52 KWTSSIARHCKNGRFSEAAAEFSRMRLSGVEPNHVTFVTLLSGCA---DSNISFGASIHG 108
Query: 357 Y 359
Y
Sbjct: 109 Y 109
>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 86.7 bits (213), Expect = 3e-15
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +3
Query: 177 SWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPSVHG 356
SWTSSIA HCRNG+L +A +F+RM+ +GV PNH+TF+TLLS C FP +GL G S+H
Sbjct: 56 SWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHA 115
Query: 357 Y 359
Y
Sbjct: 116 Y 116
>emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 86.7 bits (213), Expect = 3e-15
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +3
Query: 177 SWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPSVHG 356
SWTSSIA HCRNG+L +A +F+RM+ +GV PNH+TF+TLLS C FP +GL G S+H
Sbjct: 56 SWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHA 115
Query: 357 Y 359
Y
Sbjct: 116 Y 116
>ref|XP_004487456.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cicer arietinum]
Length = 512
Score = 84.3 bits (207), Expect = 1e-14
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +3
Query: 165 VTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPS-QGLLLG 341
+T +SWT++I+HHCRNG L +A +FTRMR SG+EPN++T +TLLS CAH PS + G
Sbjct: 45 LTVSSWTATISHHCRNGHLHEAASEFTRMRESGIEPNNITLITLLSACAHQPSITTITFG 104
Query: 342 PSVHGY 359
++H Y
Sbjct: 105 ATLHAY 110
>ref|XP_006417992.1| hypothetical protein EUTSA_v10009524mg [Eutrema salsugineum]
gi|557095763|gb|ESQ36345.1| hypothetical protein
EUTSA_v10009524mg [Eutrema salsugineum]
Length = 500
Score = 79.3 bits (194), Expect = 5e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +3
Query: 168 TTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPS 347
TT SWTS I RNGRL+ A +F+ MR +GVEPNH+TF+ LLSGC FPS LG
Sbjct: 41 TTVSWTSRITLLSRNGRLADAAKEFSDMRLAGVEPNHITFIALLSGCGDFPSGSEALGDL 100
Query: 348 VHGY 359
+HGY
Sbjct: 101 LHGY 104
>gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/64 (57%), Positives = 43/64 (67%)
Frame = +3
Query: 168 TTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPS 347
TT SWTS I RNGRL++A F+ MR SGVEPNH+TF+ LLSGC FPS L
Sbjct: 26 TTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNL 85
Query: 348 VHGY 359
+HGY
Sbjct: 86 LHGY 89
>ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +3
Query: 171 TASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPSV 350
T SWTS I RNGRL++A +F+ MR +GVEPNH+TF+ +LSGC FPS LG +
Sbjct: 36 TVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDLL 95
Query: 351 HGY 359
HGY
Sbjct: 96 HGY 98
>gb|ESW22027.1| hypothetical protein PHAVU_005G120400g [Phaseolus vulgaris]
Length = 514
Score = 77.0 bits (188), Expect = 2e-12
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 105 HHHRFSFKSSQNKNSDSPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVT 284
H H S ++ + P V +WTSSIA +C+ G L +A +F RMR + +EPNH+T
Sbjct: 30 HSHTNQSLSLKSTTKYTDPVV---AWTSSIAQYCKGGHLVKAASEFVRMREANIEPNHIT 86
Query: 285 FVTLLSGCAHFPSQ-GLLLGPSVHGY 359
+TLLS CAH PSQ + G VHGY
Sbjct: 87 LITLLSVCAHHPSQSSISFGTIVHGY 112
>ref|XP_006303598.1| hypothetical protein CARUB_v10011161mg [Capsella rubella]
gi|482572309|gb|EOA36496.1| hypothetical protein
CARUB_v10011161mg [Capsella rubella]
Length = 506
Score = 75.5 bits (184), Expect = 7e-12
Identities = 35/64 (54%), Positives = 43/64 (67%)
Frame = +3
Query: 168 TTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGVEPNHVTFVTLLSGCAHFPSQGLLLGPS 347
T SWTS I RNGRL++A +F+ MR +GVEPNH+TF+ LLSGC F S LG
Sbjct: 41 TIVSWTSRITLLTRNGRLAEAAKEFSNMRLAGVEPNHITFIALLSGCGDFSSGSEALGDL 100
Query: 348 VHGY 359
+HGY
Sbjct: 101 LHGY 104
>ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 517
Score = 75.1 bits (183), Expect = 9e-12
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +3
Query: 102 HHHHRFSFKSSQNKNSD-----SPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGV 266
H FS ++ NKN P T SWTSSI+HHC+N +A +F +M + V
Sbjct: 24 HPPSTFSPPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEV 83
Query: 267 EPNHVTFVTLLSGCAHFPSQ-GLLLGPSVH 353
EPNH+T +TLLS CAH PS+ + G ++H
Sbjct: 84 EPNHITLITLLSACAHSPSKTSITFGAALH 113
>gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 75.1 bits (183), Expect = 9e-12
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +3
Query: 102 HHHHRFSFKSSQNKNSD-----SPPEVTTASWTSSIAHHCRNGRLSQAVFQFTRMRTSGV 266
H FS ++ NKN P T SWTSSI+HHC+N +A +F +M + V
Sbjct: 24 HPPSTFSPPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEV 83
Query: 267 EPNHVTFVTLLSGCAHFPSQ-GLLLGPSVH 353
EPNH+T +TLLS CAH PS+ + G ++H
Sbjct: 84 EPNHITLITLLSACAHSPSKTSITFGAALH 113