BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00039540
         (591 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624...   129   2e-43
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   109   7e-35
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   109   7e-35
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal...   103   4e-33
emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]   118   9e-31
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             105   2e-28
emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]   126   4e-27
ref|XP_006383492.1| hypothetical protein POPTR_0005s16705g [Popu...    91   9e-24
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...    98   2e-23
gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptas...    99   8e-23
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    85   6e-22
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]      81   8e-22
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]         83   1e-21
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...    83   2e-21
gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subc...    85   7e-21
emb|CAN63671.1| hypothetical protein VITISV_006425 [Vitis vinifera]   105   7e-21
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                          86   8e-21
ref|XP_006490838.1| PREDICTED: uncharacterized protein LOC102624...   105   9e-21
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                   88   1e-20
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                   88   1e-20

>ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
          Length = 1083

 Score =  129 bits (325), Expect(2) = 2e-43
 Identities = 61/85 (71%), Positives = 70/85 (82%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LND GE++V KQVLVSFSIG YKDDVLCDVVPMHA HILLGRPWQ+DRRVT+DG+LNR +
Sbjct: 281 LNDYGEVKVNKQVLVSFSIGRYKDDVLCDVVPMHAGHILLGRPWQYDRRVTHDGYLNRYS 340

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKM 337
                + I LV LTP+QV EDQI +
Sbjct: 341 FVINKRKITLVPLTPRQVYEDQINI 365



 Score = 72.4 bits (176), Expect(2) = 2e-43
 Identities = 36/78 (46%), Positives = 58/78 (74%)
 Frame = -3

Query: 235 ELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNELTPSLPSSFIS 56
           E  +N  E+ E ++++N +AK SE+KRA   ++ ++V++ KE+ L+TNEL  SLPS+ ++
Sbjct: 360 EDQINIVERKE-RQQVNLFAKESEVKRAFFSKQPIVVLLCKEACLHTNELNFSLPSAIVT 418

Query: 55  LLQEYNDVFLEEEPNGLP 2
           LLQ+Y+DVF  + PNGLP
Sbjct: 419 LLQDYDDVFPNKVPNGLP 436


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  109 bits (273), Expect(2) = 7e-35
 Identities = 47/87 (54%), Positives = 64/87 (73%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LNDCGE++V KQ ++SF++G Y+D++LCDVVPM A H+LLGRPWQ+DR  T+ G  NR +
Sbjct: 471 LNDCGEVQVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYS 530

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMSQ 331
           L H  K   L  L+P QV EDQ ++ +
Sbjct: 531 LLHNGKKYTLAPLSPSQVFEDQKRLRE 557



 Score = 63.9 bits (154), Expect(2) = 7e-35
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
 Frame = -3

Query: 283 GQNSSEKKSGDNDKRNELSVNE-------------GEKVEGKKRLN--FYAKASELKRAL 149
           GQ   +KK G   +R    +++             GE+ E K++ N   Y KA E   A 
Sbjct: 576 GQEIEKKKDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYIKAKECLNAR 635

Query: 148 VEEKSVLVMVFKESYLNTNELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
            E   ++++ +KE  +N  +LTPSLP+S  SLLQ + DVF ++ P GLP
Sbjct: 636 REGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKGLP 684


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  109 bits (273), Expect(2) = 7e-35
 Identities = 47/87 (54%), Positives = 64/87 (73%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LNDCGE++V KQ ++SF++G Y+D++LCDVVPM A H+LLGRPWQ+DR  T+ G  NR +
Sbjct: 471 LNDCGEVQVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYS 530

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMSQ 331
           L H  K   L  L+P QV EDQ ++ +
Sbjct: 531 LLHNGKKYTLAPLSPSQVFEDQKRLRE 557



 Score = 63.9 bits (154), Expect(2) = 7e-35
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
 Frame = -3

Query: 283 GQNSSEKKSGDNDKRNELSVNE-------------GEKVEGKKRLN--FYAKASELKRAL 149
           GQ   +KK G   +R    +++             GE+ E K++ N   Y KA E   A 
Sbjct: 576 GQEIEKKKDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYIKAKECLNAR 635

Query: 148 VEEKSVLVMVFKESYLNTNELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
            E   ++++ +KE  +N  +LTPSLP+S  SLLQ + DVF ++ P GLP
Sbjct: 636 REGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKGLP 684


>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
          Length = 1215

 Score =  103 bits (257), Expect(2) = 4e-33
 Identities = 47/87 (54%), Positives = 63/87 (72%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LND G++RV  QV+V   IG Y+D++LCDV+PM A HILLGRPWQ DR+V +DGF NR +
Sbjct: 271 LNDSGKMRVKNQVVVPIVIGKYEDEILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHS 330

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMSQ 331
            + +     LVS+TP +V +DQI + Q
Sbjct: 331 FEFKGGKTILVSMTPHEVYQDQIHLKQ 357



 Score = 64.3 bits (155), Expect(2) = 4e-33
 Identities = 31/71 (43%), Positives = 45/71 (63%)
 Frame = -3

Query: 214 EKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNELTPSLPSSFISLLQEYND 35
           +K +  K+ NF+AK+ E+K A   ++ +L+ VFKE+  +     P LPS   SLLQ+Y D
Sbjct: 358 KKEQVVKQPNFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVLPSEMTSLLQDYKD 417

Query: 34  VFLEEEPNGLP 2
           VF E+ P GLP
Sbjct: 418 VFPEDNPKGLP 428


>emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]
          Length = 818

 Score =  118 bits (295), Expect(2) = 9e-31
 Identities = 55/82 (67%), Positives = 65/82 (79%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LND GE +V K+VLVSFSIG YKD+VLCD+VPMHA HILLGRPWQFDR+V +DGF NR +
Sbjct: 464 LNDFGEDKVNKEVLVSFSIGRYKDEVLCDIVPMHAGHILLGRPWQFDRKVNHDGFKNRYS 523

Query: 411 LKHRNKNIQLVSLTPQQVQEDQ 346
               NK I LV LTP+Q +E +
Sbjct: 524 FIKNNKTITLVPLTPRQKKESE 545



 Score = 41.6 bits (96), Expect(2) = 9e-31
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -3

Query: 268 EKKSGDNDKRNELSVNEGEKV-EGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLN 98
           +KK  +N K +E  +  G+   + KK+ +FYAKAS++K A    + + V+++KE  ++
Sbjct: 540 QKKESENXKESEKKIESGKNERKTKKQGSFYAKASDVKNAFYTNQPIFVLLYKEDQID 597


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  105 bits (261), Expect(2) = 2e-28
 Identities = 48/87 (55%), Positives = 64/87 (73%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+  E+ V KQV + F IG Y+D VLCDVVPM ASH+LLGRPWQFDR+  +DG+ N+ +
Sbjct: 414 LNESVEMLVNKQVEICFKIGKYEDVVLCDVVPMEASHLLLGRPWQFDRKANHDGYSNKYS 473

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMSQ 331
             + ++ I LV L P +V+EDQ KMS+
Sbjct: 474 FMYHDQKINLVPLNPSEVREDQRKMSE 500



 Score = 46.6 bits (109), Expect(2) = 2e-28
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = -3

Query: 247 DKRNELSVNEGEKVEGK-KRLNFYAKASELKRALVEEKSVLVMVFKE-SYLNTNELTPSL 74
           +K  E   NE +K + + K+ +  AK  ++K A+V  + + ++  KE   L T      L
Sbjct: 508 EKEKEKEKNEKKKNDKREKKQSLIAKIRDVKEAIVSHQPLYLLFCKEVPLLTTISNEKKL 567

Query: 73  PSSFISLLQEYNDVFLEEEPNGLP 2
           P+   SLLQE+ ++F EE P+GLP
Sbjct: 568 PNCIESLLQEFKELFPEEVPSGLP 591


>emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]
          Length = 1323

 Score =  126 bits (317), Expect = 4e-27
 Identities = 58/81 (71%), Positives = 66/81 (81%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LNDCGE++V KQVLVSFSIG YKD+VLCD+VPMHA HILLGRPWQFDR+V +DGF NR +
Sbjct: 442 LNDCGEVKVNKQVLVSFSIGRYKDEVLCDIVPMHAGHILLGRPWQFDRKVNHDGFKNRYS 501

Query: 411 LKHRNKNIQLVSLTPQQVQED 349
               NK I LV LTP+Q  ED
Sbjct: 502 FXKDNKTITLVPLTPRQEYED 522


>ref|XP_006383492.1| hypothetical protein POPTR_0005s16705g [Populus trichocarpa]
           gi|550339140|gb|ERP61289.1| hypothetical protein
           POPTR_0005s16705g [Populus trichocarpa]
          Length = 397

 Score = 91.3 bits (225), Expect(2) = 9e-24
 Identities = 40/87 (45%), Positives = 60/87 (68%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+   +++ +QV V F IG Y D VLCDVVPM+ +H+LLGR WQFDR+  +DGF N+  
Sbjct: 227 LNEYSVVKINRQVFVRFLIGKYNDKVLCDVVPMYVTHLLLGRLWQFDRKAKHDGFKNKYF 286

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMSQ 331
           L+   +   L  L+P+QV E+Q+++ +
Sbjct: 287 LEKDGRVYTLAPLSPKQVYEEQMRLKK 313



 Score = 45.1 bits (105), Expect(2) = 9e-24
 Identities = 21/65 (32%), Positives = 40/65 (61%)
 Frame = -3

Query: 262 KSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNELT 83
           K+   +K+  +   E  K + +K LNFYAK +++K A   E  ++++++KE+Y N++ L 
Sbjct: 328 KASSGEKKVRVRKEECTK-KVRKHLNFYAKPNDIKHAYFSEMPMILLMYKEAYFNSDSLN 386

Query: 82  PSLPS 68
             +PS
Sbjct: 387 SCVPS 391


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score = 98.2 bits (243), Expect(2) = 2e-23
 Identities = 45/84 (53%), Positives = 58/84 (69%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LND GE++V KQ L+S SIG Y+DDVLCDV+PMHA HILLGRPWQ+DR   + G  N+ T
Sbjct: 453 LNDDGELKVHKQALISISIGKYQDDVLCDVIPMHACHILLGRPWQYDRDTLHHGKTNKYT 512

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIK 340
           +    K   L  L P++V   Q++
Sbjct: 513 IHKGGKKYTLTPLAPKEVYNLQVQ 536



 Score = 37.0 bits (84), Expect(2) = 2e-23
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
 Frame = -3

Query: 262 KSGDNDKRNELSVNEGEKVEGKKR------LNFYAKASELKRALVEEKSVLVMVFKESYL 101
           K   + K+N ++  + ++ EG K+       N      E+++AL   + V ++   +  L
Sbjct: 553 KETTSGKQNTIAHEKKQRKEGMKKDTTQSSHNLLMTKREVEQALRRGEGVFLLYPIDFCL 612

Query: 100 NTNELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
           N  + +  +PS   +LL E+ DVF EE P GLP
Sbjct: 613 NVIK-SEIIPSDVSALLSEFADVFPEELPKGLP 644


>gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 386

 Score = 99.4 bits (246), Expect(2) = 8e-23
 Identities = 44/80 (55%), Positives = 59/80 (73%)
 Frame = -1

Query: 576 EIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCTLKHRN 397
           E+ V KQVLV+FSIG Y D++LCDVVPM A HILLGRPWQFDR V +DG  N  T  H+ 
Sbjct: 10  ELLVDKQVLVNFSIGKYNDEILCDVVPMEAGHILLGRPWQFDRNVFHDGKANTFTFVHKK 69

Query: 396 KNIQLVSLTPQQVQEDQIKM 337
             I L+ L+P+++ +D++ +
Sbjct: 70  HKISLLPLSPKEICQDELTL 89



 Score = 33.9 bits (76), Expect(2) = 8e-23
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = -3

Query: 268 EKKSGDNDKRNELSVNEGEKVEGKKRL-NFYAKASELKRALVEEKSVLVMVFKESYLNTN 92
           EK+  +   ++ +  NE    +   R+ + + +   + +AL+  K +  +   +  L+ +
Sbjct: 94  EKEIKEKSGKSIMHANESHNHDPTPRVESLFIREHVVGKALLSRKPIYFLYCNDLCLSAS 153

Query: 91  ELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
                +PSS   LL+++ DVF +E P+GLP
Sbjct: 154 H--DVIPSSLNYLLKDFADVFPKELPHGLP 181


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
           gi|31431012|gb|AAP52850.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 2447

 Score = 84.7 bits (208), Expect(2) = 6e-22
 Identities = 40/83 (48%), Positives = 57/83 (68%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+ G+ +VTK V ++F+IGNY D V CDVVPM A +ILLGRPWQFDR   + G  N+ +
Sbjct: 528 LNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYS 587

Query: 411 LKHRNKNIQLVSLTPQQVQEDQI 343
             + +K I L S++P+ +  D +
Sbjct: 588 FLYHDKKIVLHSMSPEDILRDDV 610



 Score = 45.4 bits (106), Expect(2) = 6e-22
 Identities = 24/88 (27%), Positives = 47/88 (53%)
 Frame = -3

Query: 265 KKSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNEL 86
           K   ++DK+ +    + E +  K +    A  S++   +        +V K++ ++ +++
Sbjct: 615 KSKCESDKKAQSDGKKPETINLKPKC-LLATKSDINELIASPSVAYALVCKDALISLHDM 673

Query: 85  TPSLPSSFISLLQEYNDVFLEEEPNGLP 2
             SLP +  ++LQEY+DVF +E P GLP
Sbjct: 674 QHSLPPAVANILQEYSDVFPKEVPPGLP 701


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score = 81.3 bits (199), Expect(2) = 8e-22
 Identities = 37/86 (43%), Positives = 55/86 (63%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+ G I++ ++V V F IG Y D + CDV PM   H+LLGRPWQ+DR   + G  N+ T
Sbjct: 515 LNNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYT 574

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMS 334
           +K + K + L  +TPQQ+  + ++ S
Sbjct: 575 IKWKGKELILKPMTPQQILAEHLQKS 600



 Score = 48.5 bits (114), Expect(2) = 8e-22
 Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
 Frame = -3

Query: 280 QNSSE--KKSGDNDKRNELS-----VNEGEKV---EGKKR----LNFYAKASELKRALVE 143
           Q SSE   +S    ++N LS     V+E  K    + KKR    L   A  SE++     
Sbjct: 598 QKSSEVRNESAKEGQKNNLSAPHKSVSESHKPNMRDNKKREGENLVMIATKSEMRDVRRN 657

Query: 142 EKSVL-VMVFKESYLNTNELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
            + VL ++V K++ L+ N+LT S+PS    +LQEY DVF EE P GLP
Sbjct: 658 PEQVLFILVCKDTLLSANDLT-SVPSVVARVLQEYEDVFPEETPVGLP 704


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score = 82.8 bits (203), Expect(2) = 1e-21
 Identities = 39/83 (46%), Positives = 56/83 (67%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+ G+ +VTK V ++F+IGNY D V CDVVPM A +ILLGRPWQFDR   + G  N+ +
Sbjct: 622 LNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYS 681

Query: 411 LKHRNKNIQLVSLTPQQVQEDQI 343
             + +K I L  ++P+ +  D +
Sbjct: 682 FLYHDKKIVLHPMSPEDILRDDV 704



 Score = 46.6 bits (109), Expect(2) = 1e-21
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = -3

Query: 265 KKSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNEL 86
           K   ++DK+ +    + E +  K R    A  S++   +        +V K++ ++ +++
Sbjct: 709 KSKCESDKKAQSDGKKPETINLKPRY-LLATKSDINELIASPSVAYALVCKDALISLHDM 767

Query: 85  TPSLPSSFISLLQEYNDVFLEEEPNGLP 2
             SLP +  ++LQEY+DVF +E P GLP
Sbjct: 768 QHSLPPAVANILQEYSDVFPKEVPPGLP 795


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 82.8 bits (203), Expect(2) = 2e-21
 Identities = 39/83 (46%), Positives = 56/83 (67%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+ G+ +VTK V ++F+IGNY D V CDVVPM A +ILLGRPWQFDR   + G  N+ +
Sbjct: 507 LNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYS 566

Query: 411 LKHRNKNIQLVSLTPQQVQEDQI 343
             + +K I L  ++P+ +  D +
Sbjct: 567 FLYHDKKIVLHPMSPEDILRDDV 589



 Score = 45.4 bits (106), Expect(2) = 2e-21
 Identities = 24/88 (27%), Positives = 47/88 (53%)
 Frame = -3

Query: 265 KKSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNEL 86
           K   ++DK+ +    + E +  K +    A  S++   +        +V K++ ++ +++
Sbjct: 594 KSKCESDKKAQSDGKKPETINLKPKC-LLATKSDINELIASPSVAYALVCKDALISLHDM 652

Query: 85  TPSLPSSFISLLQEYNDVFLEEEPNGLP 2
             SLP +  ++LQEY+DVF +E P GLP
Sbjct: 653 QHSLPPAVANILQEYSDVFPKEVPPGLP 680


>gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score = 84.7 bits (208), Expect(2) = 7e-21
 Identities = 41/80 (51%), Positives = 51/80 (63%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LND G  +VT+   VSFSIG+Y D V CDVVPM A  +LLGRPW+ D   T+ G  N+ T
Sbjct: 365 LNDSGRAKVTQVCRVSFSIGSYADSVDCDVVPMQACSLLLGRPWEHDNDATHHGRSNKYT 424

Query: 411 LKHRNKNIQLVSLTPQQVQE 352
             H  K I L+ LTP ++ E
Sbjct: 425 FVHNGKKITLLPLTPAEIVE 444



 Score = 42.0 bits (97), Expect(2) = 7e-21
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = -3

Query: 280 QNSSEKKSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLV-MVFKESY 104
           +N    KS    K+++LS +   KVEG K       A++ + A + +  +   ++ K++ 
Sbjct: 459 ENQQVAKSVFPPKKDKLSPSS--KVEGIKLKGGVMIATKCEIAEISDDDMCYFLICKQAL 516

Query: 103 LNTNELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
           ++ +++  S+P    +LLQEY DVF  E P GLP
Sbjct: 517 VSLDDIASSMPPVVTNLLQEYEDVFPAEIPLGLP 550


>emb|CAN63671.1| hypothetical protein VITISV_006425 [Vitis vinifera]
          Length = 537

 Score =  105 bits (263), Expect = 7e-21
 Identities = 47/87 (54%), Positives = 65/87 (74%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LND GE+RVTK+VLVSF I  Y+D+VLCD+V M   H+LLGRPW+FDR + ++GF N+ +
Sbjct: 217 LNDSGEVRVTKKVLVSFCIKKYEDEVLCDIVSMQVGHLLLGRPWKFDRHIKHNGFTNKYS 276

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKMSQ 331
                + I LV L+P+QV EDQI++ +
Sbjct: 277 FMLNQRTIILVHLSPKQVYEDQIRLQE 303


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 85.5 bits (210), Expect(2) = 8e-21
 Identities = 39/83 (46%), Positives = 59/83 (71%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LN+ G+++VTK V ++F+IG+Y+D V CDVVPM A +ILLGRPWQFD    + G  N+ +
Sbjct: 531 LNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYS 590

Query: 411 LKHRNKNIQLVSLTPQQVQEDQI 343
           L H +K I L+ ++P+ +  D +
Sbjct: 591 LIHHDKKIILLPMSPEAIVRDDV 613



 Score = 40.8 bits (94), Expect(2) = 8e-21
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = -3

Query: 265 KKSGDNDKRNELSVN--EGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTN 92
           K   +N+K  ++  N  +G K++G   L   A  +++            +V K++ ++  
Sbjct: 618 KAKTENNKNIKVVGNNKDGIKLKGHCLL---ATKTDVNELFASTTVAYALVCKDALISIQ 674

Query: 91  ELTPSLPSSFISLLQEYNDVFLEEEPNGLP 2
           ++  SLP    ++LQEY+DVF  E P GLP
Sbjct: 675 DMQHSLPPVITNILQEYSDVFPSEIPEGLP 704


>ref|XP_006490838.1| PREDICTED: uncharacterized protein LOC102624837 [Citrus sinensis]
          Length = 177

 Score =  105 bits (262), Expect = 9e-21
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = -1

Query: 591 LNDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCT 412
           LNDCGE++V KQV VSF IG YKD+VLCDVVPMHA  IL G+PWQ+DRRVT+DG LNR +
Sbjct: 52  LNDCGEVKVNKQVPVSFYIGRYKDEVLCDVVPMHAGRILFGQPWQYDRRVTHDGCLNRYS 111

Query: 411 LKHRNKNIQLVSLTPQQVQEDQIKM 337
                K I L    P  +++ + K+
Sbjct: 112 FVMNKKQITLQRWQPYTIKKKRCKV 136


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score = 88.2 bits (217), Expect(2) = 1e-20
 Identities = 39/82 (47%), Positives = 57/82 (69%)
 Frame = -1

Query: 588 NDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCTL 409
           N+ G+++VT+ V V FSI  Y D V CDVVPM A  +LLGRPWQFD+   + G  N+ TL
Sbjct: 573 NNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTL 632

Query: 408 KHRNKNIQLVSLTPQQVQEDQI 343
            H+++NI L+ ++P+ + +D I
Sbjct: 633 VHKDQNITLLPMSPEHIMKDDI 654



 Score = 37.4 bits (85), Expect(2) = 1e-20
 Identities = 24/88 (27%), Positives = 44/88 (50%)
 Frame = -3

Query: 265 KKSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNEL 86
           K+   ++K N+ S +   +++ K      A  S++    +        V KE   +  ++
Sbjct: 674 KEFEQHNKPNKSSSSVASEIKLKSGC-LLATKSDITDLDITTSVCYAFVCKEVLFSFEDM 732

Query: 85  TPSLPSSFISLLQEYNDVFLEEEPNGLP 2
             SLP + I++LQE+ DVF ++ P GLP
Sbjct: 733 PSSLPPAVINILQEFADVFPQDVPPGLP 760


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score = 88.2 bits (217), Expect(2) = 1e-20
 Identities = 39/82 (47%), Positives = 57/82 (69%)
 Frame = -1

Query: 588 NDCGEIRVTKQVLVSFSIGNYKDDVLCDVVPMHASHILLGRPWQFDRRVTYDGFLNRCTL 409
           N+ G+++VT+ V V FSI  Y D V CDVVPM A  +LLGRPWQFD+   + G  N+ TL
Sbjct: 570 NNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTL 629

Query: 408 KHRNKNIQLVSLTPQQVQEDQI 343
            H+++NI L+ ++P+ + +D I
Sbjct: 630 VHKDQNITLLPMSPEHIMKDDI 651



 Score = 37.4 bits (85), Expect(2) = 1e-20
 Identities = 24/88 (27%), Positives = 44/88 (50%)
 Frame = -3

Query: 265 KKSGDNDKRNELSVNEGEKVEGKKRLNFYAKASELKRALVEEKSVLVMVFKESYLNTNEL 86
           K+   ++K N+ S +   +++ K      A  S++    +        V KE   +  ++
Sbjct: 671 KEFEQHNKPNKSSSSVASEIKLKSGC-LLATKSDITDLDITTSVCYAFVCKEVLFSFEDM 729

Query: 85  TPSLPSSFISLLQEYNDVFLEEEPNGLP 2
             SLP + I++LQE+ DVF ++ P GLP
Sbjct: 730 PSSLPPAVINILQEFADVFPQDVPPGLP 757