BLASTX nr result
ID: Rehmannia22_contig00038986
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00038986
(527 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN79393.1| hypothetical protein VITISV_010428 [Vitis vinifera] 186 4e-45
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 184 1e-44
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera] 184 1e-44
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group] 181 1e-43
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc... 174 1e-41
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 173 2e-41
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera] 173 2e-41
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 173 2e-41
emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera] 172 3e-41
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 172 3e-41
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] 172 3e-41
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 172 3e-41
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 172 3e-41
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 172 5e-41
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 171 9e-41
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 171 1e-40
gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsi... 171 1e-40
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 170 2e-40
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 170 2e-40
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 169 4e-40
>emb|CAN79393.1| hypothetical protein VITISV_010428 [Vitis vinifera]
Length = 864
Score = 186 bits (471), Expect = 4e-45
Identities = 90/175 (51%), Positives = 120/175 (68%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
LL+VLVYVDDI++T V+HLI L ++FSLK LG ++YFLGLE H+ GI L Q
Sbjct: 508 LLLVLVYVDDIIVTGSYSTQVTHLIQQLHHQFSLKNLGLLHYFLGLEVHRTPIGIHLNQA 567
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
KYI DLL +A+M + P PTP N+ S HDG + +N S YR +GALQY T+TRPDI
Sbjct: 568 KYIIDLLTQATMLDAKPCPTPMSSNTNLSFHDGVVLENGSDYRSFVGALQYCTMTRPDID 627
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
+ VNK+ QF+H PS +HW+A K +L +L+GT H GL +P + D + C+T+ DW
Sbjct: 628 FAVNKVCQFMHHPSDIHWQAIKHILWYLKGTSHFGLFLQP-SYDFNITCYTNVDW 681
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 184 bits (466), Expect = 1e-44
Identities = 89/175 (50%), Positives = 123/175 (70%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
++ VLVYVDDI+IT +V +IT + N F+LK LG+++YFLG+E K A GI L+Q+
Sbjct: 512 VIFVLVYVDDIIITGSSDKMVQQVITNMQNAFALKDLGKLSYFLGIEVTKTASGIYLSQS 571
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
KYI+D+L K +M +CSP PTP + G + N S Y+ +GALQY+TLTRP+I+
Sbjct: 572 KYIADILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSSQYKSAVGALQYVTLTRPEIA 631
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
+ VNKLSQFL SP+ HW++CKR+LR+L+GT H GL F G M + CF+D+DW
Sbjct: 632 FSVNKLSQFLASPTAEHWESCKRLLRYLKGTIHFGLHFYHY-GTMQINCFSDSDW 685
>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
Length = 1002
Score = 184 bits (466), Expect = 1e-44
Identities = 93/174 (53%), Positives = 119/174 (68%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
L++LVYVDD+LIT ++V +V LI L N+F+LK LG V FLG EA + G+ LTQ+K
Sbjct: 680 LLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRTTTGLHLTQSK 739
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDISY 165
Y +DLL+K M + P PTP K GP F +P++YR IGALQYLT TRPDI++
Sbjct: 740 YTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLTYTRPDIAF 799
Query: 164 IVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
VNKLSQ+L P+ LHW ACKRVLR+L+G H GL F P + L+ +TDADW
Sbjct: 800 AVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTP-ASSLHLQVYTDADW 852
>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
Length = 1825
Score = 181 bits (458), Expect = 1e-43
Identities = 88/177 (49%), Positives = 123/177 (69%), Gaps = 2/177 (1%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
++ VL+YVDDI++ + L+ L+ F+LK LGE++YFLG+EA KV DGILL+Q
Sbjct: 1011 IIFVLIYVDDIIVASSMPDATTALLQDLNKSFALKDLGELHYFLGIEATKVCDGILLSQE 1070
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLF--DNPSVYRCIIGALQYLTLTRPD 174
KY+ DLL + +M+ C P TP P K S+H G + ++ + YR I+GALQYLTLTRPD
Sbjct: 1071 KYVKDLLKRINMDKCKPVSTPLSPTEKLSIHQGDVLGPNDATNYRSIVGALQYLTLTRPD 1130
Query: 173 ISYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
IS+ VNK+ Q+LHSP+ +HW A KR+LR+LQ T LGL R + +++ F+DADW
Sbjct: 1131 ISFSVNKVCQYLHSPTTVHWAAVKRILRYLQQTSGLGLKIRK-SSSLLVSGFSDADW 1186
>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 174 bits (441), Expect = 1e-41
Identities = 84/176 (47%), Positives = 120/176 (68%), Gaps = 2/176 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+ +LVYVDDI++ VV+ L+ L+ F+LK LG+++YFLG+E KV+ G++L+Q
Sbjct: 614 IFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAW 673
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLF--DNPSVYRCIIGALQYLTLTRPDI 171
Y SD+L +A M C PA TP K S+ DG ++ S YR I+GALQYLTLTR D+
Sbjct: 674 YASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDL 733
Query: 170 SYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
S++VNK+ QFLHSP+ +HW A KR+LR+++GT GL F + M++ F+DADW
Sbjct: 734 SFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGK-SDSMLISAFSDADW 788
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 173 bits (439), Expect = 2e-41
Identities = 87/176 (49%), Positives = 121/176 (68%), Gaps = 2/176 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+ VLVYVDDI++ L++ L+ +F+LK LG++NYFLG+E +KV DGI+LTQ K
Sbjct: 993 IFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDK 1052
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDG-PLFDNP-SVYRCIIGALQYLTLTRPDI 171
Y SDLL K M +C P TP + K S+H+G PL + + YR I+GALQYLTLTRPDI
Sbjct: 1053 YASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDI 1112
Query: 170 SYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
++ VNK+ QFLH+P+ LHW A KR+LR+++ +LGL + ++ F+DADW
Sbjct: 1113 AFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIH-RSDSTLVSAFSDADW 1167
>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
Length = 1334
Score = 173 bits (439), Expect = 2e-41
Identities = 88/175 (50%), Positives = 120/175 (68%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L++LVYVDDIL+T + +VSH I+ L KF+L+ LG ++YFLG++A ++ + L Q
Sbjct: 1046 ILILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQH 1105
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
KYI+DLL + ME PAPTP S DG +PS YR +GALQY+TLTRPDI+
Sbjct: 1106 KYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSEYRRTVGALQYVTLTRPDIA 1165
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
+ VNK QF+ PS +HW A KR+LR+L+GT HLGL F+P M L+ ++DADW
Sbjct: 1166 FAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQP-AASMELQGYSDADW 1219
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 173 bits (439), Expect = 2e-41
Identities = 88/175 (50%), Positives = 120/175 (68%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L++LVYVDDIL+T + +VSH I+ L KF+L+ LG ++YFLG++A ++ + L Q
Sbjct: 1046 ILILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQH 1105
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
KYI+DLL + ME PAPTP S DG +PS YR +GALQY+TLTRPDI+
Sbjct: 1106 KYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSEYRRTVGALQYVTLTRPDIA 1165
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
+ VNK QF+ PS +HW A KR+LR+L+GT HLGL F+P M L+ ++DADW
Sbjct: 1166 FAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQP-AASMELQGYSDADW 1219
>emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera]
Length = 1272
Score = 172 bits (437), Expect = 3e-41
Identities = 87/175 (49%), Positives = 119/175 (68%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L++LVYVDDIL+T + +VSH I+ L KF+L+ LG ++YFLG++A ++ + L Q
Sbjct: 915 ILILLVYVDDILVTGSNPTLVSHFISYLSTKFALRDLGPLSYFLGIQAQQLGSVLHLNQH 974
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
KYI+DLL + ME PAPTP S DG +P YR +GALQY+TLTRPDI+
Sbjct: 975 KYIADLLKRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPLEYRRTVGALQYVTLTRPDIA 1034
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
+ VNK QF+ PS +HW A KR+LR+L+GT HLGL F+P M L+ ++DADW
Sbjct: 1035 FAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQP-AASMELQGYSDADW 1088
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 172 bits (437), Expect = 3e-41
Identities = 86/175 (49%), Positives = 116/175 (66%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L VLVYVDD+LIT D +++ I L +FSLK LGE++YFLG+EA + + G+ L Q
Sbjct: 1129 ILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQK 1188
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
+Y+ DLL K +M P TP P K SL G D PS YR ++G+LQYL TRPDI+
Sbjct: 1189 RYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIA 1248
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
Y VN+LSQ++H P+ LHW+A KR+LR+L GT G+ R T + L ++DADW
Sbjct: 1249 YAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADT-PLTLHAYSDADW 1302
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa]
Length = 1390
Score = 172 bits (437), Expect = 3e-41
Identities = 86/175 (49%), Positives = 117/175 (66%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L VLVYVDD+LIT D +++ I L +FSLK LGE++YFLG+EA + + G+ L Q
Sbjct: 1125 ILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQK 1184
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
+Y+ DLL K +M P TP P K SL G D PS YR ++G+LQYL+ TRPDI+
Sbjct: 1185 RYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGTPLDKPSEYRAVLGSLQYLSFTRPDIA 1244
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
Y VN+LSQ++H P+ LHW+A KR+LR+L GT G+ R T + L ++DADW
Sbjct: 1245 YAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADT-PLKLHAYSDADW 1298
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 172 bits (437), Expect = 3e-41
Identities = 86/175 (49%), Positives = 116/175 (66%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L VLVYVDD+LIT D +++ I L +FSLK LGE++YFLG+EA + + G+ L Q
Sbjct: 1129 ILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQK 1188
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
+Y+ DLL K +M P TP P K SL G D PS YR ++G+LQYL TRPDI+
Sbjct: 1189 RYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIA 1248
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
Y VN+LSQ++H P+ LHW+A KR+LR+L GT G+ R T + L ++DADW
Sbjct: 1249 YAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADT-PLTLHAYSDADW 1302
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 172 bits (437), Expect = 3e-41
Identities = 86/175 (49%), Positives = 116/175 (66%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L VLVYVDD+LIT D +++ I L +FSLK LGE++YFLG+EA + + G+ L Q
Sbjct: 1129 ILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQK 1188
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
+Y+ DLL K +M P TP P K SL G D PS YR ++G+LQYL TRPDI+
Sbjct: 1189 RYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIA 1248
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
Y VN+LSQ++H P+ LHW+A KR+LR+L GT G+ R T + L ++DADW
Sbjct: 1249 YAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADT-PLTLHAYSDADW 1302
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 172 bits (435), Expect = 5e-41
Identities = 87/175 (49%), Positives = 119/175 (68%)
Frame = -1
Query: 527 LLMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQT 348
+L++LVYVDDIL+T + +VSH I+ L KF+L+ LG ++YFLG++A ++ + L Q
Sbjct: 393 ILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQH 452
Query: 347 KYISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDIS 168
KYI+DLL + ME PAPTP S DG +PS YR +GALQY+TLTRPDI+
Sbjct: 453 KYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTVGALQYVTLTRPDIA 512
Query: 167 YIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
+ VNK QF+ PS +HW A KR+LR+L+GT HLGL F+P M + ++DADW
Sbjct: 513 FAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQP-AASMEXQGYSDADW 566
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 171 bits (433), Expect = 9e-41
Identities = 87/174 (50%), Positives = 123/174 (70%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+++L+YVDDILIT ++ + +SHLI L++ FS+K LG V+YFLG+E D + LTQ K
Sbjct: 1062 IILLIYVDDILITGNNSSHISHLIHNLNSLFSMKDLGSVHYFLGIETVYNGDHLHLTQHK 1121
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDISY 165
YI DLL K + + P PTP K S++DG ++PS YR I+GALQYLTLTRPDI Y
Sbjct: 1122 YIVDLLKKTKLHDSRPYPTPVLSGKKLSVYDGVKLEDPSEYRSIVGALQYLTLTRPDICY 1181
Query: 164 IVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
VN++ QF+HSP+ +HW A KR+LR+L+ T + GL+++P G L ++DAD+
Sbjct: 1182 AVNQVCQFMHSPTNVHWVAVKRILRYLKYTLNHGLVYQP--GSHKLVAYSDADY 1233
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 171 bits (432), Expect = 1e-40
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 2/176 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+ VLVYVDDI++ + L+ L +F+LK LGE++YFLG+E KV +GI+L Q K
Sbjct: 855 MFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDK 914
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLF--DNPSVYRCIIGALQYLTLTRPDI 171
Y +DLL K M +C PA TP + K SLH+G L ++ S YR ++GALQYLTLTRPDI
Sbjct: 915 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDI 974
Query: 170 SYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
++ VNK+ QFLH+P+ +HW A KR+LR+L+ LGL +G ++ F+DADW
Sbjct: 975 AFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHK-SGSTLVSGFSDADW 1029
>gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 387
Score = 171 bits (432), Expect = 1e-40
Identities = 91/177 (51%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
L VLVYVDDI+IT D V + ++L D +FSLK LG ++YFLG+EA + G+ L Q K
Sbjct: 67 LYVLVYVDDIIITGDASLVKNFNVSLAD-RFSLKDLGALSYFLGIEATRTKKGLHLMQRK 125
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLFDNPSVYRCIIGALQYLTLTRPDISY 165
YI+DLL K M + P TP K SLH G + D+ YR IIG+LQYL+ TRPDI++
Sbjct: 126 YITDLLAKTHMLDAKPISTPMATTPKLSLHSGTILDDAKEYRMIIGSLQYLSFTRPDIAF 185
Query: 164 IVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFR---PLTGDMILECFTDADW 3
+VN+LSQF+H P+ HW+A KRVLR+L GTK G+ R PLT + F+DADW
Sbjct: 186 VVNRLSQFMHKPTDEHWQAAKRVLRYLAGTKSHGIFLRSDAPLT----VHSFSDADW 238
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 170 bits (431), Expect = 2e-40
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 2/176 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+ VLVYVDDI++ + L+ L +F+LK LGE++YFLG+E KV +GI+L Q K
Sbjct: 1133 MFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDK 1192
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLF--DNPSVYRCIIGALQYLTLTRPDI 171
Y +DLL K M +C PA TP + K SLH+G L ++ S YR ++GALQYLTLTRPDI
Sbjct: 1193 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDI 1252
Query: 170 SYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
++ VNK+ QFLH+P+ +HW A KR+LR+L+ LGL +G ++ F+DADW
Sbjct: 1253 AFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHK-SGSTLVSGFSDADW 1307
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 170 bits (431), Expect = 2e-40
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 2/176 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+ VLVYVDDI++ + L+ L +F+LK LGE++YFLG+E KV +GI+L Q K
Sbjct: 1126 MFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDK 1185
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLF--DNPSVYRCIIGALQYLTLTRPDI 171
Y +DLL K M +C PA TP + K SLH+G L ++ S YR ++GALQYLTLTRPDI
Sbjct: 1186 YANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDI 1245
Query: 170 SYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
++ VNK+ QFLH+P+ +HW A KR+LR+L+ LGL +G ++ F+DADW
Sbjct: 1246 AFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHK-SGSTLVSGFSDADW 1300
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 169 bits (428), Expect = 4e-40
Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Frame = -1
Query: 524 LMVLVYVDDILITEDDVAVVSHLITLLDNKFSLKILGEVNYFLGLEAHKVADGILLTQTK 345
+ +LVYVDDI+IT + +++ L + F++K LG+++YFLG+E H+ DG+LL Q K
Sbjct: 1113 IYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEK 1172
Query: 344 YISDLLVKASMENCSPAPTPCCPNSKFSLHDGPLF--DNPSVYRCIIGALQYLTLTRPDI 171
Y DLL + ME C P TP + K S G L + + YR ++GALQYLTLTRPD+
Sbjct: 1173 YARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDL 1232
Query: 170 SYIVNKLSQFLHSPSVLHWKACKRVLRFLQGTKHLGLLFRPLTGDMILECFTDADW 3
SY +N++ QFLH+P+ LHW A KR+LR +Q T LGL RP + ++L F+DADW
Sbjct: 1233 SYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRP-SLSLMLSAFSDADW 1287