BLASTX nr result
ID: Rehmannia22_contig00037271
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00037271
(1031 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 209 1e-51
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 198 3e-48
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 194 6e-47
ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Popu... 174 7e-41
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 172 3e-40
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 170 7e-40
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 165 2e-38
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 154 7e-35
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 154 7e-35
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 153 9e-35
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 152 3e-34
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 152 3e-34
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 145 2e-32
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 142 2e-31
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 142 3e-31
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 140 1e-30
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 140 1e-30
gb|EXB59778.1| NADP-dependent malic enzyme [Morus notabilis] 138 4e-30
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 137 7e-30
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 137 7e-30
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 209 bits (532), Expect = 1e-51
Identities = 142/331 (42%), Positives = 193/331 (58%), Gaps = 7/331 (2%)
Frame = +1
Query: 58 LPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIR-SFSGFVA 234
LP SVE +++IC E+ Q + R L+ IGE+ SLE+L I S+ PI+ S S F+
Sbjct: 20 LPYSVETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKII--SSRPIKKSLSAFLV 77
Query: 235 CLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSFPVE 414
L+ + YP ++ SP SP + S+SP + P G+ +Q E
Sbjct: 78 YLIDR-YPDCLSS------SPFNSPLKR------SSSPLLFPSP-EGKRVQG-------E 116
Query: 415 SPSSNLDRTG------PQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETT 576
SPS + G PQ ++ QLSF +E PE + RR SP
Sbjct: 117 SPSKSKLEMGFLACASPQKVARQLSFREE-PES-----------NCRRTSP--------- 155
Query: 577 EPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIW 756
+SQQLMILN+LE+RKLFLVLSYIG +KLE +V+ A++I K+L M FES+IW
Sbjct: 156 ---NVSQQLMILNELEFRKLFLVLSYIGCKKLEDIVSPQIADDIVRKKNLSMTDFESEIW 212
Query: 757 ITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKI 936
+G+ + +SDRS+Y+ W+ KTHIY CH+ ++G FKGPYLN+ R HLQR+LGDD +
Sbjct: 213 NAFGKAYYAESDRSKYVDWNCRKTHIYYCHIKQNGQCTFKGPYLNTARTHLQRALGDDNV 272
Query: 937 LTVKFLEDGAYVTDKIVEEGILVGPWRYRFF 1029
L VKF+ED + + IVEEGILVG RYRFF
Sbjct: 273 LLVKFVEDTS-CANMIVEEGILVGLRRYRFF 302
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 198 bits (504), Expect = 3e-48
Identities = 133/345 (38%), Positives = 186/345 (53%), Gaps = 17/345 (4%)
Frame = +1
Query: 46 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIR-SFS 222
+EV LP SV+ I +IC +++Q + + R +L IGE+ SL +L I S I+ + S
Sbjct: 10 EEVELPSSVQQMINQICKKERQNSPDDTVRRLLVAIGEERSLYILNEI--SKCQIKKTLS 67
Query: 223 GFVACLVKKEY---------------PIVAATVLADYESPQASPQTQRIWSPSSTSPYIS 357
GF+ + KK Y P+++A ES SPQ +R S +SP S
Sbjct: 68 GFIVFMAKKYYQSETQQFYQKQNHEQPVLSA------ESFYHSPQIRR---NSLSSPNSS 118
Query: 358 PHTLNGENLQSPLLSF-PVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSV 534
++N P+ + +S+ +GP+ S LS + +K Y
Sbjct: 119 CSSVNFSPRNRPIFQDRDIVGDTSDSPTSGPRIPSPPLSPVTTSFQKCHY---------- 168
Query: 535 RRQSPLAGERRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHS 714
P + R+ IS+QL+ LNKLE+RK FL+L+YIGR+K+E V+TL +I
Sbjct: 169 ---DPSPSKFRDRASTRGISEQLLALNKLEFRKFFLILNYIGRRKVEDVITLHDVGDILD 225
Query: 715 MKDLPMEVFESKIWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNS 894
M PM FES IW YG C+ + R QYL WDSG+TH+Y CHV D SY FKGPYL +
Sbjct: 226 MIYQPMSHFESYIWNKYGH-LCEHNKRVQYLDWDSGRTHLYHCHVHSDRSYTFKGPYLKA 284
Query: 895 TRNHLQRSLGDDKILTVKFLEDGAYVTDKIVEEGILVGPWRYRFF 1029
R HLQ SLGD+ +L VKF ++ ++IV+ GILVG RYRFF
Sbjct: 285 ERTHLQHSLGDENVLIVKFEQNTPGCPEEIVQNGILVGLRRYRFF 329
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 194 bits (492), Expect = 6e-47
Identities = 138/380 (36%), Positives = 194/380 (51%), Gaps = 51/380 (13%)
Frame = +1
Query: 43 HQEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIR-SF 219
++EV LP SV+ I +IC +++Q + + R +L IGE+ SL +L I S I+ +
Sbjct: 9 NEEVELPHSVQQMINQICKKERQNSPDDKVRRLLVAIGEERSLCILREI--SKCQIKKTL 66
Query: 220 SGFVACLVKKEYPIVAATVLA--DYESPQAS-------PQTQR--IWSPSSTS------- 345
SGF+ + KK Y +YE P S PQ +R + SP+S+
Sbjct: 67 SGFIVFMAKKYYQSETQQFYQKQNYEEPVPSAESFYHSPQIRRSSLSSPNSSCSSVNFSP 126
Query: 346 ---PYISPHTLNGENLQSPLLSFPVESP------------------SSNLDRTGPQNISC 462
P + + G+ SP + + SP S+ DR + IS
Sbjct: 127 RNRPIFQDNDIVGDASDSPTSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISE 186
Query: 463 QL------SFEDETPEKRSYVIQEKKSP---SVRRQ--SPLAGERRETTEPMTISQQLMI 609
QL ++P + SP S +R P R+ IS+QL+
Sbjct: 187 QLLALNIVGDASDSPTSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLLA 246
Query: 610 LNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKS 789
L+KLE+RK FL+L+YIGR+K+E V+ L +I M PM FES IW YG C+ +
Sbjct: 247 LSKLEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYGH-LCEHN 305
Query: 790 DRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGAY 969
R QYL WDSG+TH+Y CHV DGSY FKGPYL + R HLQ+SLGD+ +L VKF ++
Sbjct: 306 KRVQYLDWDSGRTHLYHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKFEQNTPG 365
Query: 970 VTDKIVEEGILVGPWRYRFF 1029
++IV+ GILVG RYRFF
Sbjct: 366 CPEEIVQNGILVGLRRYRFF 385
>ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
Length = 305
Score = 174 bits (440), Expect = 7e-41
Identities = 127/342 (37%), Positives = 170/342 (49%), Gaps = 16/342 (4%)
Frame = +1
Query: 52 VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIR-SFSGF 228
V LP VE I +IC E+ + ++ R LA +GE+ +L +L I S IR SF GF
Sbjct: 10 VPLPCVVEELIAKICREQNRRPLETNTRLTLASLGEEVALNILWRI--SGQEIRKSFDGF 67
Query: 229 VACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSFP 408
V L K+ P + A SS+SP I H+ + Q P P
Sbjct: 68 VLHLAKQFSPNINA---------------------SSSSPNI--HSSLSPSPQQPQNRSP 104
Query: 409 VESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETTEPMT 588
+ + ++ +S + E S +R+ T
Sbjct: 105 ITTTRLLMNSQSDSGAQSPISLKLEG-------------------SSTMDSQRQRGNEST 145
Query: 589 ISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYG 768
SQ L+ L +LE+RK FL+LSY+G + LE VV++D +I KDLPM FESKIW +G
Sbjct: 146 TSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVD---QIRGYKDLPMRTFESKIWEAFG 202
Query: 769 --QKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILT 942
+ + + DR +YL WDSGKTHIY CHV DGSY FKGPYL+ RN LQR+LGDD IL
Sbjct: 203 CRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNILM 262
Query: 943 VKF--LEDGAYVT-----------DKIVEEGILVGPWRYRFF 1029
VKF ++D Y +K++ EGI VG YRFF
Sbjct: 263 VKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFF 304
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 172 bits (435), Expect = 3e-40
Identities = 128/341 (37%), Positives = 166/341 (48%), Gaps = 15/341 (4%)
Frame = +1
Query: 52 VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSGFV 231
V LP SVE I +I E+ + + AR LA +GE A+L+VL TI S+ SFSG++
Sbjct: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIA-SDKIKYSFSGYI 71
Query: 232 ACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSFPV 411
LVKK + SP + +SPSS SP T+ L +
Sbjct: 72 NYLVKK-------------RNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLN------- 111
Query: 412 ESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQ---SPLAGERRETTEP 582
P+ YV+ K+SP +Q SP++
Sbjct: 112 ------------------------LPQGTDYVV--KQSPVADQQPRGSPMSSISHAMRHR 145
Query: 583 MTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWIT 762
+I Q + L +LE+RK FL+LSYIG LE V+T A+EI M+DL M FES++W
Sbjct: 146 ASI-PQYVALGELEFRKAFLILSYIGENSLEEVIT---ADEIRGMRDLQMARFESEVWEK 201
Query: 763 YGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILT 942
G+K + DR L WDSGKTH+Y CH+ G+ FKGPYLN TR HLQR LGDD IL
Sbjct: 202 LGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILL 261
Query: 943 VKFLE------------DGAYVTDKIVEEGILVGPWRYRFF 1029
VKF E D ++I EGILVG Y FF
Sbjct: 262 VKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFF 302
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 170 bits (431), Expect = 7e-40
Identities = 129/341 (37%), Positives = 166/341 (48%), Gaps = 15/341 (4%)
Frame = +1
Query: 52 VRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSGFV 231
V LP SVE I +I E+ + + AR LA +GE A+L+VL TI S+ SFSG++
Sbjct: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIA-SDKIKYSFSGYI 71
Query: 232 ACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSFPV 411
LVKK + SP + +SPSS SP T+ L L+ P
Sbjct: 72 NYLVKKR-------------NNNGSPLKRVCFSPSSPQQNRSPVTVTTVRL----LNLP- 113
Query: 412 ESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQ---SPLAGERRETTEP 582
+ YV+ K+SP +Q SP++
Sbjct: 114 ----------------------------QDYVV--KQSPVADQQPRGSPMSSISHAMRHR 143
Query: 583 MTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWIT 762
+I Q + L +LE+RK FL+LSYIG LE V+T D EI M+DL M FES++W
Sbjct: 144 ASIPQYVA-LGELEFRKAFLILSYIGENSLEEVITAD---EIRGMRDLQMARFESEVWEK 199
Query: 763 YGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILT 942
G+K + DR L WDSGKTH+Y CH+ G+ FKGPYLN TR HLQR LGDD IL
Sbjct: 200 LGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILL 259
Query: 943 VKFLE------------DGAYVTDKIVEEGILVGPWRYRFF 1029
VKF E D ++I EGILVG Y FF
Sbjct: 260 VKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFF 300
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 165 bits (418), Expect = 2e-38
Identities = 122/342 (35%), Positives = 166/342 (48%), Gaps = 14/342 (4%)
Frame = +1
Query: 46 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPI-RSFS 222
Q V LP SVE I +I ++ QP + + R LAE+GEQ +L++L I S PI RS +
Sbjct: 4 QSVNLPSSVENLINQIREQQSQPPLDSSIRRNLAELGEQKALQILYYI--STQPIKRSLN 61
Query: 223 GFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLS 402
F ++ + + SP + + S S + P++L QS LLS
Sbjct: 62 AFTVYMINQ------------HRSPPSPSRPSSSQSQSQSQSQSRPYSL-----QSQLLS 104
Query: 403 FPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETTEP 582
+Q + SP R L +T P
Sbjct: 105 H----------------------------------LQSRPSPLPLRSQSLPSS---STAP 127
Query: 583 MTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWIT 762
S L L +LE+RK FL++SY GR+ +E VVT A + S+K+L M+ FE +IW T
Sbjct: 128 PPHSDVLTALGELEFRKSFLLMSYAGRENIENVVT---AEYVRSLKELTMKNFEKEIWET 184
Query: 763 YGQKFCDK-SDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKIL 939
GQK+ ++ +DR YL WDSG+THIY C V +GS FKGP L TR HLQ+SLGDD +L
Sbjct: 185 VGQKYIERPTDRLVYLDWDSGRTHIYQCFVSPNGSLRFKGPILQHTRTHLQKSLGDDNVL 244
Query: 940 TVKFLED------------GAYVTDKIVEEGILVGPWRYRFF 1029
VKF ED A +K +EG+ VG YRFF
Sbjct: 245 LVKFAEDQYARKSETSAQKAAKHYEKFGKEGLRVGLRLYRFF 286
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 154 bits (388), Expect = 7e-35
Identities = 86/171 (50%), Positives = 108/171 (63%), Gaps = 15/171 (8%)
Frame = +1
Query: 562 RRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVF 741
+R+ T SQ L+ L +LE+RK FL+LSY+G + LE VV++D +I KDLPM F
Sbjct: 4 QRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVD---QIRGYKDLPMRTF 60
Query: 742 ESKIWITYG--QKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQR 915
ESKIW +G + + + DR +YL WDSGKTHIY CHV DGSY FKGPYL+ RN LQR
Sbjct: 61 ESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQR 120
Query: 916 SLGDDKILTVKF-------------LEDGAYVTDKIVEEGILVGPWRYRFF 1029
+LGDD IL VKF L+D +K++ EGI VG YRFF
Sbjct: 121 TLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFF 171
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 154 bits (388), Expect = 7e-35
Identities = 86/171 (50%), Positives = 108/171 (63%), Gaps = 15/171 (8%)
Frame = +1
Query: 562 RRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVF 741
+R+ T SQ L+ L +LE+RK FL+LSY+G + LE VV++D +I KDLPM F
Sbjct: 26 QRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVD---QIRGYKDLPMRTF 82
Query: 742 ESKIWITYG--QKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQR 915
ESKIW +G + + + DR +YL WDSGKTHIY CHV DGSY FKGPYL+ RN LQR
Sbjct: 83 ESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQR 142
Query: 916 SLGDDKILTVKF-------------LEDGAYVTDKIVEEGILVGPWRYRFF 1029
+LGDD IL VKF L+D +K++ EGI VG YRFF
Sbjct: 143 TLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFF 193
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 153 bits (387), Expect = 9e-35
Identities = 86/171 (50%), Positives = 107/171 (62%), Gaps = 15/171 (8%)
Frame = +1
Query: 562 RRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVF 741
RR+ + P QL+ L +LE+RK FL+LSYIG ++ E +++ A EI +K+LPM VF
Sbjct: 94 RRQASSP-----QLVALGELEFRKAFLILSYIGDKRPEDLLS---AEEILKLKNLPMGVF 145
Query: 742 ESKIWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSL 921
E+++W G+KF + DR + WDS KTHIY CHV DGSY FKGPYLN TR HLQR L
Sbjct: 146 ETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVL 205
Query: 922 GDDKILTVKFLEDGAYVTD---------------KIVEEGILVGPWRYRFF 1029
GD+ IL VKF ED VTD KI EGI VG +YRFF
Sbjct: 206 GDENILLVKFAED---VTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFF 253
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 152 bits (383), Expect = 3e-34
Identities = 86/199 (43%), Positives = 119/199 (59%), Gaps = 22/199 (11%)
Frame = +1
Query: 499 SYVIQEKKSP---SVRRQSPLAGERRETTEPMTISQ-------QLMILNKLEYRKLFLVL 648
+Y+++++ P S +SP+ R ++ P T + Q+ L +LE+RK FL+L
Sbjct: 76 TYLLRQQPPPPSLSSPSRSPVPENSRPSSSPGTFANSQGANGAQMEALGELEFRKQFLIL 135
Query: 649 SYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQYLGWDSGKT 828
+YIGR +L++V T A EI S+K+L M FE ++W +G+K+ D+ DR Y WDSGKT
Sbjct: 136 NYIGRNELQSVTT---AEEIRSLKNLSMVQFEKQVWQRFGEKYVDQEDRRIYHDWDSGKT 192
Query: 829 HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGA----------YVT- 975
HIY CHV +GS+ FKGPYL + HLQ+ LGDD +L VKF E+ A Y
Sbjct: 193 HIYRCHVSPEGSFRFKGPYLEKPKKHLQKVLGDDNVLMVKFAEEEAERFSIGSRDHYYAG 252
Query: 976 -DKIVEEGILVGPWRYRFF 1029
KI EGILVG RY FF
Sbjct: 253 YSKICREGILVGLRRYCFF 271
Score = 60.8 bits (146), Expect = 8e-07
Identities = 39/118 (33%), Positives = 58/118 (49%)
Frame = +1
Query: 37 SPHQEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRS 216
+P EV LP+SV ++RIC E+ QP R LA GE +L VL TI T I+S
Sbjct: 11 APCIEVPLPRSVLELLERICAERSQPPPDAELRRKLASAGEDEALRVLRTIADCKTKIKS 70
Query: 217 FSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQS 390
GFV L++++ P + + SP SP + SS + + NG +++
Sbjct: 71 LHGFVTYLLRQQPPPPSLS------SPSRSPVPENSRPSSSPGTFANSQGANGAQMEA 122
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 152 bits (383), Expect = 3e-34
Identities = 85/171 (49%), Positives = 108/171 (63%), Gaps = 15/171 (8%)
Frame = +1
Query: 562 RRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVF 741
+R+ T SQ L+ L +LE+RK FL+L+Y+G + LE VV+ D +I KDLPME F
Sbjct: 4 QRQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSAD---QIRGYKDLPMETF 60
Query: 742 ESKIWITYG--QKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQR 915
ESKIW +G + + + DR +YL WDSGK HIY CHV DGSY FKGPYL+ RN LQR
Sbjct: 61 ESKIWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQR 120
Query: 916 SLGDDKILTVKF--LEDGAYVT-----------DKIVEEGILVGPWRYRFF 1029
+LGDD IL VKF ++D Y +K++ EGI VG YRFF
Sbjct: 121 TLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFF 171
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 145 bits (367), Expect = 2e-32
Identities = 86/179 (48%), Positives = 106/179 (59%), Gaps = 23/179 (12%)
Frame = +1
Query: 562 RRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVF 741
RR+ + P QL+ L +LE+RK FL+LSYIG + E +++ A EI +K+LPM VF
Sbjct: 94 RRQASSP-----QLVALGELEFRKAFLILSYIGELRPEDLLS---AEEILKLKNLPMGVF 145
Query: 742 ESKIWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFK--------GPYLNST 897
E+++W G+KF + DR + WDS KTHIY CHV DGSY FK GPYLN T
Sbjct: 146 ETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKT 205
Query: 898 RNHLQRSLGDDKILTVKFLEDGAYVTD---------------KIVEEGILVGPWRYRFF 1029
R HLQR LGD+ IL VKF ED VTD KI EGI VG +YRFF
Sbjct: 206 RTHLQRVLGDENILLVKFAED---VTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFF 261
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 142 bits (359), Expect = 2e-31
Identities = 82/165 (49%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Frame = +1
Query: 574 TEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKI 753
T P S L L ++E+RK FL LSYIGR+ LE V + D I S+KDLPM FE I
Sbjct: 100 TRPGQTSSALHALGEMEFRKAFLCLSYIGRESLENVASADC---IRSLKDLPMATFEKTI 156
Query: 754 WITYGQKFC-DKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDD 930
W +G+ +SDR Y+ WDSG+TH+Y C+V DGS FKGP L ST+ HLQRSLGDD
Sbjct: 157 WEAFGKDHIYSQSDRQVYVDWDSGRTHVYQCYVSSDGSLRFKGPILQSTQTHLQRSLGDD 216
Query: 931 KILTVKFLEDG-----------AY-VTDKIVEEGILVGPWRYRFF 1029
+L VKF E+G AY + K +EGI VG YRFF
Sbjct: 217 NVLLVKFAENGIANNIRTSAEEAYRLYGKFGKEGINVGLRLYRFF 261
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 142 bits (357), Expect = 3e-31
Identities = 90/223 (40%), Positives = 122/223 (54%), Gaps = 13/223 (5%)
Frame = +1
Query: 400 SFPVESPSSNLDRTGPQNISCQ-LSFEDETPEKRSYV-IQEKKSPSVRRQSPLAGE-RRE 570
SF V + + TG Q +S S + +P R + ++ SV +P + +RE
Sbjct: 75 SFIVSKVNQAVSVTGSQRLSSGGSSAQPRSPSGRHVCRVLDQDEMSVDSDAPSSKSLQRE 134
Query: 571 TTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESK 750
QL+ L +LE++K FL+LSYI Q+L VVT A EI KDLPM +E+
Sbjct: 135 DVGGTLHIPQLVALGELEFKKAFLLLSYIPGQRLGEVVT---AEEIRRWKDLPMVAYEAA 191
Query: 751 IWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDD 930
+W + G+KFC ++D + L WDSGKTH Y CHV DGSY FKGP L ST HL + LGD+
Sbjct: 192 VWDSLGRKFCPQTDE-RVLQWDSGKTHYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDE 250
Query: 931 KILTVKF----------LEDGAYVTDKIVEEGILVGPWRYRFF 1029
+LTVKF D + I + GI+VG RY+FF
Sbjct: 251 NVLTVKFANVQKNSSTYCSDSYFTYKGIAKNGIMVGLRRYKFF 293
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 140 bits (352), Expect = 1e-30
Identities = 83/181 (45%), Positives = 106/181 (58%), Gaps = 13/181 (7%)
Frame = +1
Query: 526 PSVRRQSPLAGERRETTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANE 705
PS R+Q+ R T S L L +LE+RK FL+LSYIGR+ LE +T +
Sbjct: 103 PSTRQQTSPTRPPRPTP-----SSLLHALGELEFRKAFLILSYIGRESLENCIT---DAK 154
Query: 706 IHSMKDLPMEVFESKIWITYGQK-FCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGP 882
I S+KDLPM FE IW +G+K D+SDR + W+SG+TH+Y C V DG+ FKGP
Sbjct: 155 IRSLKDLPMAKFEKTIWEDFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGP 214
Query: 883 YLNSTRNHLQRSLGDDKILTVKFLEDGA------------YVTDKIVEEGILVGPWRYRF 1026
L STR HLQ++LGDD +L VKF EDG+ + K +EGI VG YRF
Sbjct: 215 ILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRF 274
Query: 1027 F 1029
F
Sbjct: 275 F 275
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 140 bits (352), Expect = 1e-30
Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 13/223 (5%)
Frame = +1
Query: 400 SFPVESPSSNLDRTGPQNISCQLS-FEDETPEKRSY--VIQEKKSPSVRRQSPLAGERRE 570
SF V + ++ TG +S +S +P R V+QE+ S SP + + E
Sbjct: 72 SFIVSKVNQAVNFTGYPRLSSGVSPANSRSPSGRHVCRVLQEEMSVDSDAPSPKSLKSEE 131
Query: 571 TTEPMTISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESK 750
+ I Q L+ L +LE++K FL+LSYI Q+L V T D EI KDLPM +E+
Sbjct: 132 NGGSLHIPQ-LVALGELEFKKAFLLLSYIPGQQLGQVTTAD---EIRLWKDLPMVAYEAA 187
Query: 751 IWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDD 930
+W G+++C ++DR + L WDSGKTH Y CHV DGSY FKGP L T HL + LGD+
Sbjct: 188 VWDRLGRRYCPQTDR-RMLQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDE 246
Query: 931 KILTVKFLE----------DGAYVTDKIVEEGILVGPWRYRFF 1029
+LTVKF + D + +I + GI++G RY+FF
Sbjct: 247 NVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFF 289
>gb|EXB59778.1| NADP-dependent malic enzyme [Morus notabilis]
Length = 1017
Score = 138 bits (347), Expect = 4e-30
Identities = 95/305 (31%), Positives = 145/305 (47%)
Frame = +1
Query: 46 QEVRLPQSVEATIQRICVEKKQPAIKNYAREMLAEIGEQASLEVLTTILFSNTPIRSFSG 225
+EV LP+SV+ I +IC ++ Q + R LA+ GE+ +LE+L TI + RS SG
Sbjct: 6 EEVPLPRSVDELIDKICADQSQAHPEAKLRWRLAQRGEEGALEILRTIATTKIK-RSLSG 64
Query: 226 FVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSPLLSF 405
F+ L+++ SP+++P + S S TS G + +++
Sbjct: 65 FIIHLLERS------------SSPRSTPPKRLRLSDSPTS---------GSGVSDKVITV 103
Query: 406 PVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRETTEPM 585
+P E S + ++P G
Sbjct: 104 QCYAPPKGAT--------------------------EAVSRCLFLEAPTEGGEAV----- 132
Query: 586 TISQQLMILNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITY 765
+ L +LE+RK FL+L+YIG +L+ V+ A EI ++K L M FE K+W +
Sbjct: 133 -----MAALGELEFRKQFLILNYIGSNELQTVLR---AEEIRNLKGLQMVEFERKLWDRF 184
Query: 766 GQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTV 945
G ++ D DR WD +TH+Y CHV +G + FKGPYL+ T+ HLQR LGDD +L V
Sbjct: 185 GVRYVDPQDRVVNNDWDPERTHLYHCHVSTEGRFRFKGPYLDKTKTHLQRELGDDNVLMV 244
Query: 946 KFLED 960
KF E+
Sbjct: 245 KFGEE 249
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 137 bits (345), Expect = 7e-30
Identities = 114/342 (33%), Positives = 158/342 (46%), Gaps = 11/342 (3%)
Frame = +1
Query: 37 SPHQEVRLPQSVEATIQRICVEKKQPA-IKNYAREMLAEIGEQASLEVLTTILFSNTPIR 213
SP E+ L SVE +++I + I R L+ I E+ +LE L + F+ ++
Sbjct: 10 SPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKV-FNKPYLK 68
Query: 214 SFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSP 393
+ G + VK TV D SP +SP GE+
Sbjct: 69 TLDGLIMYFVK-------GTVTVD------------------GSPRLSP----GES---- 95
Query: 394 LLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRET 573
PV+SP TP K+S + S + SP +R E
Sbjct: 96 ----PVQSP--------------------RTPAKKSCRASQDVSLDLETPSPKFMKREEN 131
Query: 574 TEPMTISQQLMILNKLEYRKLFLVLSYIGRQKL-EAVVTLDGANEIHSMKDLPMEVFESK 750
I L+ L +LE++K FL+LSYIG + L E V++ D +I KDLPM +E+
Sbjct: 132 GGSKYIPP-LLALGELEFKKAFLLLSYIGGESLVEEVISGD---QIRKWKDLPMVSYEAA 187
Query: 751 IWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDD 930
+W GQ++C +R + L DSG TH Y CHV DGSY FKG L +T HL + LGDD
Sbjct: 188 VWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDD 247
Query: 931 KILTVKFLE--------DGAYVTDK-IVEEGILVGPWRYRFF 1029
+LTVKF + + Y T K I + GI+VG RYRFF
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFF 289
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 137 bits (345), Expect = 7e-30
Identities = 114/342 (33%), Positives = 158/342 (46%), Gaps = 11/342 (3%)
Frame = +1
Query: 37 SPHQEVRLPQSVEATIQRICVEKKQPA-IKNYAREMLAEIGEQASLEVLTTILFSNTPIR 213
SP E+ L SVE +++I + I R L+ I E+ +LE L + F+ ++
Sbjct: 10 SPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKV-FNKPYLK 68
Query: 214 SFSGFVACLVKKEYPIVAATVLADYESPQASPQTQRIWSPSSTSPYISPHTLNGENLQSP 393
+ G + VK TV D SP +SP GE+
Sbjct: 69 TLDGLIMYFVK-------GTVTVD------------------GSPRLSP----GES---- 95
Query: 394 LLSFPVESPSSNLDRTGPQNISCQLSFEDETPEKRSYVIQEKKSPSVRRQSPLAGERRET 573
PV+SP TP K+S + S + SP +R E
Sbjct: 96 ----PVQSP--------------------RTPAKKSCRASQDVSLDLETPSPKFMKREEN 131
Query: 574 TEPMTISQQLMILNKLEYRKLFLVLSYIGRQKL-EAVVTLDGANEIHSMKDLPMEVFESK 750
I L+ L +LE++K FL+LSYIG + L E V++ D +I KDLPM +E+
Sbjct: 132 GGSKYIPP-LLALGELEFKKAFLLLSYIGGESLVEEVISGD---QIRKWKDLPMVSYEAA 187
Query: 751 IWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDD 930
+W GQ++C +R + L DSG TH Y CHV DGSY FKG L +T HL + LGDD
Sbjct: 188 VWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDD 247
Query: 931 KILTVKFLE--------DGAYVTDK-IVEEGILVGPWRYRFF 1029
+LTVKF + + Y T K I + GI+VG RYRFF
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFF 289