BLASTX nr result
ID: Rehmannia22_contig00037269
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00037269
(600 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ21964.1| hypothetical protein PRUPE_ppa026078mg, partial [... 75 1e-16
gb|EMJ11928.1| hypothetical protein PRUPE_ppa021798mg [Prunus pe... 77 7e-16
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 81 1e-15
gb|EMJ27906.1| hypothetical protein PRUPE_ppa020120mg [Prunus pe... 72 2e-15
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 79 3e-15
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 81 6e-15
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 81 6e-15
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 75 7e-15
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 77 7e-15
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 81 1e-14
ref|XP_006471307.1| PREDICTED: uncharacterized protein LOC102611... 74 2e-14
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 71 2e-14
ref|XP_006485550.1| PREDICTED: uncharacterized protein LOC102627... 73 3e-14
ref|XP_002452355.1| hypothetical protein SORBIDRAFT_04g024215 [S... 75 4e-14
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 74 4e-14
ref|XP_002527529.1| conserved hypothetical protein [Ricinus comm... 70 4e-14
ref|XP_002452061.1| hypothetical protein SORBIDRAFT_04g017843 [S... 81 5e-14
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 74 6e-14
ref|XP_002452289.1| hypothetical protein SORBIDRAFT_04g023082 [S... 71 8e-14
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 70 1e-13
>gb|EMJ21964.1| hypothetical protein PRUPE_ppa026078mg, partial [Prunus persica]
Length = 400
Score = 75.1 bits (183), Expect(2) = 1e-16
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Frame = -3
Query: 529 KYW-AVFVYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWS 353
K W A FVYA ++ W + + +W L GDFN++C+ EK GG I +
Sbjct: 201 KNWKATFVYAYPQKHKQKQLWIDILGLKPTASEAWILMGDFNNVCTPSEKLGGSISLPSA 260
Query: 352 FVKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAE 173
FN FI + E + +G FTW N + ERLDRV + +W +P +++
Sbjct: 261 MADFNGFINDSETISLNAAGIPFTWCNGHRDNSVIYERLDRVLLNPNWLNLYPNCAIQNL 320
Query: 172 YKISSDH 152
+ SDH
Sbjct: 321 PILRSDH 327
Score = 37.0 bits (84), Expect(2) = 1e-16
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 119 NKKRHKRFQFDKRWLEYPEVEEVVQKAWTISVTGNAMFQ 3
N+ + F+F+ WL +P+ + +V +AW++ GN+ Q
Sbjct: 338 NRNNPRAFKFEAMWLSHPDFQRIVLQAWSVDYQGNSSQQ 376
>gb|EMJ11928.1| hypothetical protein PRUPE_ppa021798mg [Prunus persica]
Length = 1171
Score = 76.6 bits (187), Expect(2) = 7e-16
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Frame = -3
Query: 586 ILEHSFCFEVECSKEG-EMDKYWAV-FVYASTNDRERNIQWEFLHQARAKWGNSWFLAGD 413
IL + C+ + C + +K W F+YA +++ W + + + W + GD
Sbjct: 172 ILNYHECY-INCELQDITTNKSWTTTFIYAYPQKAKQSNLWREIVSLKPTNNHPWLMLGD 230
Query: 412 FNDICSNCEKKGGRIRPSWSFVKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGFVEERLD 233
FN ICS EK GG S + FN+ I + E+ + +G FTW N + ERLD
Sbjct: 231 FNSICSMNEKVGGSFETSQAMRNFNKVIDDCEVVSLAATGVPFTWCNGHHDNTIIYERLD 290
Query: 232 RVFGSADWCLKFPLASVKAEYKISSDH 152
R + DW P + ++ + SDH
Sbjct: 291 RALANPDWMRLLPHSELQNLPIVRSDH 317
Score = 33.1 bits (74), Expect(2) = 7e-16
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 104 KRFQFDKRWLEYPEVEEVVQKAWTISVTGNAMFQ 3
K F+F+ WL + ++VV + W S GNA Q
Sbjct: 333 KTFKFEAMWLAHKNFDQVVSQVWNCSYVGNAAQQ 366
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 81.3 bits (199), Expect(2) = 1e-15
Identities = 43/145 (29%), Positives = 79/145 (54%)
Frame = -3
Query: 529 KYWAVFVYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSF 350
+++ VY + ++++ WE + + W + GDFN I N EK+GG R SF
Sbjct: 100 EFYVSCVYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSF 159
Query: 349 VKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEY 170
+ F + + + +M E+P+ G FTW ++ E +++ RLDR FG+ +W FP+++ +
Sbjct: 160 LPFTDMLDSCDMLELPSIGNPFTW-GGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLD 218
Query: 169 KISSDHCYYSWMMVLMRIKRGTKDF 95
K SDH VL+R+ + +++
Sbjct: 219 KRGSDH-----RPVLVRLTKTKEEY 238
Score = 27.7 bits (60), Expect(2) = 1e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 98 FQFDKRWLEYPEVEEVVQKAW 36
F+FDKR P V+E + +AW
Sbjct: 242 FRFDKRLFNQPNVKETIVQAW 262
>gb|EMJ27906.1| hypothetical protein PRUPE_ppa020120mg [Prunus persica]
Length = 1011
Score = 72.4 bits (176), Expect(2) = 2e-15
Identities = 40/119 (33%), Positives = 61/119 (51%)
Frame = -3
Query: 508 YASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEFI 329
Y +T D ++ W L ++ W GDFN++ EK+GG IRP + F + I
Sbjct: 80 YPATEDT--HLSWNLLRDLASESRLPWVCMGDFNELLYANEKEGGLIRPVRQMLAFRDAI 137
Query: 328 RNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
+ + ++ G FTW + R+G ++ERLDRV + +W FP A+V SSDH
Sbjct: 138 SDCHLDDMGFEGATFTWFSTRNGG--IKERLDRVLANCEWRSLFPQATVHHLEPCSSDH 194
Score = 36.2 bits (82), Expect(2) = 2e-15
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 113 KRHKRFQFDKRWLEYPEVEEVVQKAWTISVTGNAMFQ 3
+R F+F+ W ++ + E ++ AW S TG M+Q
Sbjct: 209 RRRSFFRFESMWTQHEDCESIIANAWNTSFTGTLMYQ 245
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 78.6 bits (192), Expect(2) = 3e-15
Identities = 40/120 (33%), Positives = 60/120 (50%)
Frame = -3
Query: 511 VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEF 332
VY ER+ W+ L W L GDFN+I SN EK GG +R W+F F
Sbjct: 485 VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNM 544
Query: 331 IRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
+ + +++++ + G+ F+W R V+ LDRVF ++ W FP A ++ SDH
Sbjct: 545 VSHCDIEDMRSKGDRFSWVGERHTH-TVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDH 603
Score = 28.9 bits (63), Expect(2) = 3e-15
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 113 KRHKRFQFDKRWLEYPEVEEVVQKAW 36
+R K F+FD R ++ P + +VQ +W
Sbjct: 616 RRSKLFRFDNRLIDIPTFKRIVQTSW 641
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 80.9 bits (198), Expect(2) = 6e-15
Identities = 43/120 (35%), Positives = 63/120 (52%)
Frame = -3
Query: 511 VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEF 332
VY + +R+ WE + + + W + GDFNDI N EK GG R FNE
Sbjct: 67 VYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEM 126
Query: 331 IRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
I+ ++ E+P G FTWA R G+ +++ RLDR FG+ +W FP+++ SDH
Sbjct: 127 IKGCDLVEMPAHGNGFTWAGRR-GDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDH 185
Score = 25.8 bits (55), Expect(2) = 6e-15
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 101 RFQFDKRWLEYPEVEEVVQKAWT 33
+F+FDKR+L +V+E + + W+
Sbjct: 202 QFRFDKRFLFKEDVKEAIIRTWS 224
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 80.9 bits (198), Expect(2) = 6e-15
Identities = 43/120 (35%), Positives = 63/120 (52%)
Frame = -3
Query: 511 VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEF 332
VY + +R+ WE + + + W + GDFNDI N EK GG R FNE
Sbjct: 70 VYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEM 129
Query: 331 IRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
I+ ++ E+P G FTWA R G+ +++ RLDR FG+ +W FP+++ SDH
Sbjct: 130 IKGCDLVEMPAHGNGFTWAGRR-GDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDH 188
Score = 25.8 bits (55), Expect(2) = 6e-15
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 101 RFQFDKRWLEYPEVEEVVQKAWT 33
+F+FDKR+L +V+E + + W+
Sbjct: 205 QFRFDKRFLFKEDVKEAIIRTWS 227
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 75.1 bits (183), Expect(2) = 7e-15
Identities = 36/121 (29%), Positives = 57/121 (47%)
Frame = -3
Query: 514 FVYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNE 335
++Y + +D E+ W ++ W + GDFN++ EK GG W F +
Sbjct: 709 WMYGNPHDNEKRAFWRLMYSRFPVQSLPWLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRD 768
Query: 334 FIRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSD 155
F+ N ++++ G F+W R G F++ERLDR G+ W P + KI SD
Sbjct: 769 FLNNGHLRDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKIGSD 828
Query: 154 H 152
H
Sbjct: 829 H 829
Score = 31.2 bits (69), Expect(2) = 7e-15
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -2
Query: 125 DENKK---RHKRFQFDKRWLEYPEVEEVVQKAWTISVTGNAM 9
D N K + + F+F++ W + E +V+Q++W + G+AM
Sbjct: 835 DSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAM 876
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 77.4 bits (189), Expect(2) = 7e-15
Identities = 40/120 (33%), Positives = 59/120 (49%)
Frame = -3
Query: 511 VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEF 332
VY ER+ W+ L W L GDFN+I SN EK GG +R W+F F
Sbjct: 259 VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNM 318
Query: 331 IRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
+ + +++++ + G+ F+W R V+ LDRVF ++ W FP A + SDH
Sbjct: 319 VSHCDIEDMRSKGDRFSWVGERHTH-TVKCCLDRVFINSAWTATFPYAETEFLDFTGSDH 377
Score = 28.9 bits (63), Expect(2) = 7e-15
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 113 KRHKRFQFDKRWLEYPEVEEVVQKAW 36
+R K F+FD R ++ P + +VQ +W
Sbjct: 390 RRSKLFRFDNRLIDIPTFKRIVQTSW 415
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 81.3 bits (199), Expect(2) = 1e-14
Identities = 50/128 (39%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = -3
Query: 532 DKYWAVF-VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSW 356
+K W + VY R WE L+ K +W L GDFNDI SN EK GG R
Sbjct: 95 NKVWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPS 154
Query: 355 SFVKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKA 176
SF F + N M E+ ++G FTW NR+ + +V+ +LDR FG+ W FP A
Sbjct: 155 SFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQ-WVQCKLDRCFGNPAWFSIFPNAHQWF 213
Query: 175 EYKISSDH 152
K SDH
Sbjct: 214 LEKFGSDH 221
Score = 24.3 bits (51), Expect(2) = 1e-14
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = -2
Query: 125 DENKKRHKRFQFDKRWLEYPEVEEVVQKAWTISVT 21
++N+ +F++DKR + P EV+ ++W +++
Sbjct: 230 NDNELFRGQFRYDKRLDDDPYCIEVIHRSWNSAMS 264
>ref|XP_006471307.1| PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis]
Length = 323
Score = 74.3 bits (181), Expect(2) = 2e-14
Identities = 37/119 (31%), Positives = 55/119 (46%)
Frame = -3
Query: 508 YASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEFI 329
Y R W L A W GDFND+ + EK+G P+W F + +
Sbjct: 4 YGFPESSRRRDSWNLLRTLSAVLSLPWVCIGDFNDLLAANEKRGKHKHPNWKLQGFKQAV 63
Query: 328 RNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
+ + ++ G +FTW +R + +VEERLDRV + W +F A V + +SDH
Sbjct: 64 SDSGLLDIGMEGYQFTWERSRGTDNWVEERLDRVLATDLWISRFKEAQVWSLESSTSDH 122
Score = 30.8 bits (68), Expect(2) = 2e-14
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 119 NKKRHKRFQFDKRWLEYPEVEEVVQKAWTIS 27
+ +R KRF+F+ WL EVV+ +W+ S
Sbjct: 134 HSRRLKRFRFENMWLREANCAEVVRSSWSSS 164
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 71.2 bits (173), Expect(2) = 2e-14
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Frame = -3
Query: 532 DKYWAVFVYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWS 353
++ + FVY + R + W+ L + WF+ GDFN+I N EK+GG+ R S
Sbjct: 97 NRVFITFVYGDPVVQYRELVWKRLTRIGIVRSEPWFMIGDFNEIIGNHEKRGGKKRSESS 156
Query: 352 FVKFNEFIRNMEMKEVPTSGEEFTWANNRS-------GEGFVEERLDRVFGSADWCLKFP 194
F+ F I N M + P++G F+W RS ++ RLDR G+ +W +
Sbjct: 157 FLPFCCMIENCGMIDFPSTGSLFSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYS 216
Query: 193 LASVKAEYKISSDH 152
+V+ SDH
Sbjct: 217 HTNVEYLQHRGSDH 230
Score = 33.5 bits (75), Expect(2) = 2e-14
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 107 HKRFQFDKRWLEYPEVEEVVQKAWTISVTGNAM 9
+K F FDKRW+ P +E VQ+ W G +
Sbjct: 245 YKHFIFDKRWINKPGFKESVQEGWAFPSRGEGV 277
>ref|XP_006485550.1| PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
Length = 473
Score = 73.2 bits (178), Expect(2) = 3e-14
Identities = 30/95 (31%), Positives = 53/95 (55%)
Frame = -3
Query: 430 WFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGF 251
W + GDFND+ ++ EK+G + P+W F + + ++ + ++ G +FTW ++ + +
Sbjct: 133 WVVLGDFNDLLNSTEKRGKLVHPNWKLQGFKDVVSDLGLHDLGMEGYQFTWEMSKGNKNW 192
Query: 250 VEERLDRVFGSADWCLKFPLASVKAEYKISSDHCY 146
+EERLD S +W FP A V + SDH +
Sbjct: 193 LEERLDHGLASINWIRLFPQAKVSSLKASCSDHLH 227
Score = 31.2 bits (69), Expect(2) = 3e-14
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 116 KKRHKRFQFDKRWLEYPEVEEVVQKAWTISVTGNAMFQ 3
+ R K+F+F+ WL P+ + +VQ +W S GN Q
Sbjct: 238 QSRVKKFRFENLWLCEPDCQPIVQDSWASS--GNVSIQ 273
>ref|XP_002452355.1| hypothetical protein SORBIDRAFT_04g024215 [Sorghum bicolor]
gi|241932186|gb|EES05331.1| hypothetical protein
SORBIDRAFT_04g024215 [Sorghum bicolor]
Length = 1212
Score = 75.1 bits (183), Expect(2) = 4e-14
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
Frame = -3
Query: 598 NVHQILEHSFCFEVECSKEGEMDKYWAVFVYASTNDRERNIQWEFLH---QARAKWGNSW 428
+V ++++ F V+ + E + +W VY D +Q FLH Q RA +W
Sbjct: 119 SVSSVIKNRFFISVQVADE-RSEPWWVSAVYGPPQDEADKVQ--FLHELVQFRAGTSGAW 175
Query: 427 FLAGDFNDICSNCEKKGGRIRPSWSFVKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGFV 248
L+GDFN I +K GR+ +F FI ++ E+ G FTW+N R
Sbjct: 176 LLSGDFNMIHRASDKSNGRL-DRRGMRRFRNFINQAQLDEIQLVGRAFTWSNARDQPTL- 233
Query: 247 EERLDRVFGSADWCLKFPLASVKAEYKISSDHCYYSWMMVLMRIKRGTK 101
E LDR+F + +W +FP ++ SDHC +L+++ G K
Sbjct: 234 -ELLDRMFVTQEWLARFPAHFLRPLSSDCSDHC-----PILLQVVLGVK 276
Score = 28.9 bits (63), Expect(2) = 4e-14
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 113 KRHKRFQFDKRWLEYPEVEEVVQKAWTISVTG 18
K +RF+F+ W P EVV AW S+ G
Sbjct: 276 KAKRRFRFEPFWASVPGFIEVVASAWGNSLPG 307
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 73.9 bits (180), Expect(2) = 4e-14
Identities = 41/139 (29%), Positives = 71/139 (51%)
Frame = -3
Query: 511 VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEF 332
VY +++ WE + + W + GDFN I N EK+GG R SF+ F +
Sbjct: 70 VYGDPAFSNKHLVWEKISKIGLNRKEPWCMLGDFNVILHNGEKRGGPRRGDSSFISFKDM 129
Query: 331 IRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
+ +M E+P+ G F+W R+ +++ RLDR FG+ +W FP+++ + K SD
Sbjct: 130 LECCDMLELPSKGNPFSWGGKRNSL-WIQCRLDRCFGNKNWFRHFPVSNQEFLDKRGSDR 188
Query: 151 CYYSWMMVLMRIKRGTKDF 95
VL+R+ + +++
Sbjct: 189 -----RPVLVRLSKTKEEY 202
Score = 30.0 bits (66), Expect(2) = 4e-14
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 122 ENKKRHK-RFQFDKRWLEYPEVEEVVQKAW 36
+ K+ +K F+FDKR P V+E +Q+AW
Sbjct: 197 KTKEEYKGNFRFDKRLFNQPLVKEAIQQAW 226
>ref|XP_002527529.1| conserved hypothetical protein [Ricinus communis]
gi|223533079|gb|EEF34838.1| conserved hypothetical
protein [Ricinus communis]
Length = 216
Score = 70.1 bits (170), Expect(2) = 4e-14
Identities = 35/111 (31%), Positives = 56/111 (50%)
Frame = -3
Query: 484 RNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEFIRNMEMKEV 305
R W+ L + + W + GDFNDI ++ EK+GG +P+W F + + + ++
Sbjct: 13 RKDNWDLLRSLASINDSPWIVMGDFNDILNHREKRGGVAQPNWLVEGFRRAVWDSGLVDL 72
Query: 304 PTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
G FTW R +V+ERL+R+ G+ DW + A V + SDH
Sbjct: 73 GFQGCPFTWERGRESGLWVQERLNRMLGNGDWVARHKDARVVHLDSVVSDH 123
Score = 33.9 bits (76), Expect(2) = 4e-14
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 122 ENKKRHKRFQFDKRWLEYPEVEEVVQKAWTISV 24
E + KRF+F+ W Y E EEVV+ +W V
Sbjct: 134 EGTRSSKRFRFENLWTNYGESEEVVRDSWNKEV 166
>ref|XP_002452061.1| hypothetical protein SORBIDRAFT_04g017843 [Sorghum bicolor]
gi|241931892|gb|EES05037.1| hypothetical protein
SORBIDRAFT_04g017843 [Sorghum bicolor]
Length = 503
Score = 80.9 bits (198), Expect(2) = 5e-14
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Frame = -3
Query: 532 DKYWAVFVYASTNDRERNIQWEFLHQARAKWGNS--WFLAGDFNDICSNCEKKGGRIRPS 359
DK+ VY +N WE + + + + G+ W AGDFN+I + EK+GG R
Sbjct: 275 DKWRCTGVYGEPE--MKNKTWELMEELKEQDGDHLPWLCAGDFNEILYHYEKEGGIPRTQ 332
Query: 358 WSFVKFNEFIRNMEMKEVPTSGEEFTWAN-NRSGEGFVEERLDRVFGSADWCLKFPLASV 182
+F E + E+ ++ SG+ FTW N + G ++ ERLDR + W +KFPL +V
Sbjct: 333 ACLDRFKEVLETCELDDLGFSGDVFTWRNKHNKGSTYIRERLDRAVANMSWRMKFPLVNV 392
Query: 181 KAEYKISSDH 152
K SDH
Sbjct: 393 KNGDTYHSDH 402
Score = 22.7 bits (47), Expect(2) = 5e-14
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 98 FQFDKRWLEYPEVEEVVQKAW 36
F+F+ W++ EV++ AW
Sbjct: 422 FKFEASWVKEAGCREVIEGAW 442
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 73.6 bits (179), Expect(2) = 6e-14
Identities = 35/111 (31%), Positives = 57/111 (51%)
Frame = -3
Query: 484 RNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEFIRNMEMKEV 305
R++ W+ + A+ ++W L GDFNDI N EK+GG +R F+ F F+ + ++
Sbjct: 57 RSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDI 116
Query: 304 PTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSDH 152
+G +W R F++ RLDR G+ W FP++ + SDH
Sbjct: 117 NHTGNSLSWRGTRYSH-FIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDH 166
Score = 29.6 bits (65), Expect(2) = 6e-14
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -2
Query: 113 KRHKRFQFDKRWLEYPEVEEVVQKAWTISVTGNAMFQ 3
KR K F+FD+R E E+ +V++ W ++ + +++
Sbjct: 179 KRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYK 215
>ref|XP_002452289.1| hypothetical protein SORBIDRAFT_04g023082 [Sorghum bicolor]
gi|241932120|gb|EES05265.1| hypothetical protein
SORBIDRAFT_04g023082 [Sorghum bicolor]
Length = 714
Score = 70.9 bits (172), Expect(2) = 8e-14
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Frame = -3
Query: 541 GEMDKYWAV-FVYASTNDRERNIQWEFLHQARAKWGNS---WFLAGDFNDICSNCEKKGG 374
G + W + VY D ++ + FL + NS W GDFN I +K
Sbjct: 63 GVSPRPWCISVVYGPHQDADQVL---FLDDLLSYGSNSPFPWLAVGDFNMIYRAADKNNS 119
Query: 373 RIRPSWSFVKFNEFIRNMEMKEVPTSGEEFTWANNRSGEGFVEERLDRVFGSADWCLKFP 194
R+ S +F FI +++EVP G FTW+N R E E LDRVFGS DW FP
Sbjct: 120 RLNCR-SMCRFRSFINRAQLEEVPLIGRHFTWSNER--ENPTLELLDRVFGSTDWMATFP 176
Query: 193 LASVKAEYKISSDHC 149
++ SDHC
Sbjct: 177 RHMLRPLSTDCSDHC 191
Score = 32.0 bits (71), Expect(2) = 8e-14
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 104 KRFQFDKRWLEYPEVEEVVQKAWTISV 24
+RF F+ W ++ + +EVV AWTI V
Sbjct: 205 RRFHFEPHWAKFLDFKEVVAAAWTIHV 231
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 69.7 bits (169), Expect(2) = 1e-13
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = -3
Query: 511 VYASTNDRERNIQWEFLHQARAKWGNSWFLAGDFNDICSNCEKKGGRIRPSWSFVKFNEF 332
+Y + ++ W + W +AGDFN+I + EK+GGR++ + +F
Sbjct: 351 LYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHA 410
Query: 331 IRNMEMKEVPTSGEEFTWAN-NRSGEGFVEERLDRVFGSADWCLKFPLASVKAEYKISSD 155
+ + + ++ G+ FTW N + S EG++ ERLDR + +W FP A V SD
Sbjct: 411 LTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSD 470
Query: 154 H 152
H
Sbjct: 471 H 471
Score = 32.7 bits (73), Expect(2) = 1e-13
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 107 HKRFQFDKRWLEYPEVEEVVQKAWTIS 27
H F+F+ WLE + +EVV++AW +S
Sbjct: 491 HNDFRFEAAWLEEEKFKEVVKEAWDVS 517