BLASTX nr result
ID: Rehmannia22_contig00036747
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00036747
(423 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group] 49 4e-06
gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Jap... 50 6e-06
gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Jap... 50 7e-06
gb|AAL76007.1|AF466646_15 prpol [Zea mays] 47 7e-06
gb|AAD11615.1| prpol [Zea mays] 47 7e-06
gb|ABF97503.1| retrotransposon protein, putative, unclassified [... 48 7e-06
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Ja... 48 7e-06
gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subc... 49 9e-06
gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Jap... 49 9e-06
>emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group]
Length = 992
Score = 48.5 bits (114), Expect(2) = 4e-06
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +1
Query: 61 EKKAEVREVANAEQQVRVSEIREGRPIWY---FTFSD*DADKLVHPLSDPLVVTAPILGI 231
+KK ++R V + ++ EG P + +F DA++++ P DPLV++A I G
Sbjct: 109 QKKMQIRMVHS------ITSAGEGVPQYQNQLISFGPEDAEEVMFPHQDPLVISAEIAGF 162
Query: 232 LMHRILVDSGSYASVIYIRAFRRI 303
+ RILVD GS A VI+ A+ ++
Sbjct: 163 EVRRILVDGGSSADVIFAEAYAKM 186
Score = 27.3 bits (59), Expect(2) = 4e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + I G G +KR
Sbjct: 193 LTPAPASLRGFGGEAVQVLGQAFLLIAFGSGENKR 227
>gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431922|gb|AAP53628.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1292
Score = 50.1 bits (118), Expect(2) = 6e-06
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +1
Query: 55 HPEKKAEVREVANAEQQVRVSEIREGRPIWY---FTFSD*DADKLVHPLSDPLVVTAPIL 225
H +KK + R V + ++ EG P + +F DA+ ++ P DPLV++A I
Sbjct: 317 HKKKKMQTRMVHS------ITSAGEGAPQYLNQLISFGPEDAEGVIFPHQDPLVISAEIA 370
Query: 226 GILMHRILVDSGSYASVIYIRAFRRI 303
G + RILVD GS A VI+ A+ ++
Sbjct: 371 GFEVRRILVDGGSSADVIFAEAYAKM 396
Score = 25.4 bits (54), Expect(2) = 6e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + I G G ++R
Sbjct: 403 LTPAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRR 437
>gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Japonica Group]
Length = 1497
Score = 50.1 bits (118), Expect(2) = 7e-06
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +1
Query: 49 SVHPEKKAEVREVANAEQQVRVSEIREGRPIWY---FTFSD*DADKLVHPLSDPLVVTAP 219
++ KK ++R V N ++ EG P + +F DA+ ++ P DPLV++A
Sbjct: 395 NIRQRKKMQIRMVHN------ITSAGEGAPQYVNQLISFGPEDAEGVLFPHQDPLVISAE 448
Query: 220 ILGILMHRILVDSGSYASVIYIRAFRRI 303
I G + RILVD GS A +I+ A+ ++
Sbjct: 449 IAGFEVRRILVDEGSSADIIFAEAYAKM 476
Score = 25.0 bits (53), Expect(2) = 7e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + I G G ++R
Sbjct: 483 LTPAPASLRGFGGEPVQVLGQALLLIAFGSGDNRR 517
>gb|AAL76007.1|AF466646_15 prpol [Zea mays]
Length = 1317
Score = 47.0 bits (110), Expect(2) = 7e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 49 SVHPEKKAEVREVANAEQQVRVSE--IREGRPIWYFTFSD*DADKLVHPLSDPLVVTAPI 222
S P K + +E Q V V I+ TFS D +P +D +V++ I
Sbjct: 25 SSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVISCVI 84
Query: 223 LGILMHRILVDSGSYASVIYIRAFRRI 303
G L+H +LVD+GS A +I+ +AFR++
Sbjct: 85 KGFLVHNVLVDTGSAADIIFAKAFRQM 111
Score = 28.1 bits (61), Expect(2) = 7e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 339 ILGFGGGRIVPLGEVDMSIQLG 404
+ GFGG +IV LG++ MS+ G
Sbjct: 125 LCGFGGRQIVALGKITMSVTFG 146
>gb|AAD11615.1| prpol [Zea mays]
Length = 1317
Score = 47.0 bits (110), Expect(2) = 7e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 49 SVHPEKKAEVREVANAEQQVRVSE--IREGRPIWYFTFSD*DADKLVHPLSDPLVVTAPI 222
S P K + +E Q V V I+ TFS D +P +D +V++ I
Sbjct: 25 SSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVISCVI 84
Query: 223 LGILMHRILVDSGSYASVIYIRAFRRI 303
G L+H +LVD+GS A +I+ +AFR++
Sbjct: 85 KGFLVHNVLVDTGSAADIIFAKAFRQM 111
Score = 28.1 bits (61), Expect(2) = 7e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 339 ILGFGGGRIVPLGEVDMSIQLG 404
+ GFGG +IV LG++ MS+ G
Sbjct: 125 LCGFGGRQIVALGKITMSVTFG 146
>gb|ABF97503.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1172
Score = 48.1 bits (113), Expect(2) = 7e-06
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = +1
Query: 88 ANAEQQVRVSE-----IREGRP-IWYFTFSD*DADKLVHPLSDPLVVTAPILGILMHRIL 249
A A+QQV+V+E +R+ +P I DA+ + P DPLV++A I G + RIL
Sbjct: 331 AQAQQQVQVAEPPPLVVRQPQPAIQAQPPRQEDAEGVTFPHQDPLVISAEIAGFEVRRIL 390
Query: 250 VDSGSYASVIYIRAFRRISTT 312
VD GS VI+ A+ ++ T
Sbjct: 391 VDGGSSTDVIFAEAYAKMGLT 411
Score = 26.9 bits (58), Expect(2) = 7e-06
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + + G G ++R
Sbjct: 415 LTPAPTSLRGFGGEAVQVLGQAQLIVAFGTGENRR 449
>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1168
Score = 48.1 bits (113), Expect(2) = 7e-06
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = +1
Query: 88 ANAEQQVRVSE-----IREGRP-IWYFTFSD*DADKLVHPLSDPLVVTAPILGILMHRIL 249
A A+QQV+V+E +R+ +P I DA+ + P DPLV++A I G + RIL
Sbjct: 327 AQAQQQVQVAEPPPLVVRQPQPAIQAQPPRQEDAEGVTFPHQDPLVISAEIAGFEVRRIL 386
Query: 250 VDSGSYASVIYIRAFRRISTT 312
VD GS VI+ A+ ++ T
Sbjct: 387 VDGGSSTDVIFAEAYAKMGLT 407
Score = 26.9 bits (58), Expect(2) = 7e-06
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + + G G ++R
Sbjct: 411 LTPAPTSLRGFGGEAVQVLGQAQLIVAFGTGENRR 445
>gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1735
Score = 48.9 bits (115), Expect(2) = 9e-06
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +1
Query: 61 EKKAEVREVANAEQQVRVSEIREGRPIWY---FTFSD*DADKLVHPLSDPLVVTAPILGI 231
+KK ++R V + ++ EG P + F DA+ ++ P DPLV++A I G
Sbjct: 505 QKKMQIRMVHS------ITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEIAGF 558
Query: 232 LMHRILVDSGSYASVIYIRAFRRISTTA 315
+ RILVD GS A VI+ A+ ++ T+
Sbjct: 559 EVRRILVDGGSSADVIFAEAYAKMGLTS 586
Score = 25.8 bits (55), Expect(2) = 9e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + I G G ++R
Sbjct: 589 LTPAPASLRGFGGEAVQVLGQALLLIAFGSGENRR 623
>gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1722
Score = 48.9 bits (115), Expect(2) = 9e-06
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +1
Query: 61 EKKAEVREVANAEQQVRVSEIREGRPIWY---FTFSD*DADKLVHPLSDPLVVTAPILGI 231
+KK ++R V + ++ EG P + F DA+ ++ P DPLV++A I G
Sbjct: 492 QKKMQIRMVHS------ITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEIAGF 545
Query: 232 LMHRILVDSGSYASVIYIRAFRRISTTA 315
+ RILVD GS A VI+ A+ ++ T+
Sbjct: 546 EVRRILVDGGSSADVIFAEAYAKMGLTS 573
Score = 25.8 bits (55), Expect(2) = 9e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 318 IRPCNDNILGFGGGRIVPLGEVDMSIQLGQGAHKR 422
+ P ++ GFGG + LG+ + I G G ++R
Sbjct: 576 LTPAPASLRGFGGEAVQVLGQALLLIAFGSGENRR 610