BLASTX nr result
ID: Rehmannia22_contig00036668
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00036668
(955 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 70 1e-09
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 67 1e-08
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 66 2e-08
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 62 4e-07
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 62 4e-07
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 61 7e-07
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia... 61 7e-07
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ... 61 7e-07
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 60 2e-06
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 60 2e-06
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 59 3e-06
ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutr... 59 4e-06
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia... 58 6e-06
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 58 6e-06
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 58 6e-06
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 70.1 bits (170), Expect = 1e-09
Identities = 60/254 (23%), Positives = 99/254 (38%)
Frame = -3
Query: 953 QRRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQAS 774
++RG+ +D C CGE ET HL + C + W I+P++ + SF+ W
Sbjct: 1082 RKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLL 1141
Query: 773 STGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGVVREWNEMQNLNQSGL 594
T + + L I W +W RN W+F+K K + + VR E +
Sbjct: 1142 DTHKDT---EWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEFEE------ 1192
Query: 593 KKGKISLNQSGSSHVEPGLISEVGPIYTMVSATVIIGDKFGIGGWVCDENEKMIQAWALS 414
+ S ++ ++H + VG + V A V G+GG V D ++ A
Sbjct: 1193 ECAHTSPVETLNTHENGWSVPPVGMVKLNVDAAVFKHVGIGMGGVVRDAEGDVLLATCCG 1252
Query: 413 REMAKSSVEAALIGIRHSMLVGYNKNVXXXXXXXXXXXIVRKLRNKDAFTGPESTIAEDI 234
+ A +R+ + V Y + +LR K + P + +DI
Sbjct: 1253 GWAMEDPAMAEACSLRYGLKVAYEAGFRNLVVEMDCKKLFLQLRGKASDVTPFGRVVDDI 1312
Query: 233 FLLHFLFDFCSFVV 192
+L CS VV
Sbjct: 1313 L---YLASKCSNVV 1323
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 67.0 bits (162), Expect = 1e-08
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Frame = -3
Query: 953 QRRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQ---WEGILEDEFSFQRWWI 783
+RR + D C+ CGE E + HL FQC +K IW+ A ++ + ++ + F+ I
Sbjct: 529 KRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESI 588
Query: 782 QASSTGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGVV---REWNEMQN 612
Q + AR + L +I W +WK RN IF +W++ D+I + ++W E N
Sbjct: 589 QKLNQS----ARKDVSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQWKESLN 644
Query: 611 LNQSGLKKGKI 579
N+ +K ++
Sbjct: 645 CNEQQQRKPQL 655
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 65.9 bits (159), Expect = 2e-08
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 7/206 (3%)
Frame = -3
Query: 953 QRRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQ---RWWI 783
+ R I DP C+ C ETI H+ F C A+++W+ A L + + R +
Sbjct: 1416 RNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLIL 1475
Query: 782 QASSTGNSSIARDRMQLSCYILWWLWKTRNLWIFQKI---KWTVVDTIAGVVREWNEMQN 612
Q N I M +I+W LWK+RN ++FQ++ W V EW E
Sbjct: 1476 QGKKNQNLPILNGLMPF--WIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETM- 1532
Query: 611 LNQSGLKKGKISLNQSGSSHVEPGLISEVGPIYTMVSATVIIGDKFGIGGWVC-DENEKM 435
+N + + N S + G + + + G + GW+ D N ++
Sbjct: 1533 VNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRV 1592
Query: 434 IQAWALSREMAKSSVEAALIGIRHSM 357
+ + + + S+++A +G H++
Sbjct: 1593 LHSGCAKLQQSYSALQAEALGFLHAL 1618
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 61.6 bits (148), Expect = 4e-07
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQASST 768
RGI D C MC ETI H+ F+C A+ +W I + G + T
Sbjct: 1075 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1134
Query: 767 GNSSIARDRMQLSCYILWWLWKTRNLWIFQ---KIKWTVVDTIAGVVREWNEMQNLNQSG 597
+ + +S +ILW+LWK RN +F+ I T+VD EW Q Q+
Sbjct: 1135 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQND 1194
Query: 596 LKKGKIS 576
K KI+
Sbjct: 1195 EKHLKIT 1201
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 61.6 bits (148), Expect = 4e-07
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPV-QWEGILEDEFSFQRWWIQASS 771
R I + +C CG E+I HL F C ++ IW ++P+ E I F + S
Sbjct: 956 RHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSR 1015
Query: 770 TGNSSIARDRMQLSCYILWWLWKTRNLWIFQKI 672
IA D M++ +ILW++WK+RN +IF+ +
Sbjct: 1016 GKEFDIAEDIMEIFPWILWYIWKSRNRFIFENV 1048
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 60.8 bits (146), Expect = 7e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 12/187 (6%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQW-EGILEDEFSFQRWWIQASS 771
RG+++DP C C ETI H+ F C A IW ++ W G + + + +S
Sbjct: 1392 RGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINS 1451
Query: 770 TGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWT---VVDTIAGVVREWNEMQNLNQS 600
N+++ ++ +++W LWK RN +F K + VV V EW +Q++N+
Sbjct: 1452 FSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEW--LQSVNRR 1509
Query: 599 GLKKGKISLNQSGSSHVEPGLISEVGPIYTMVSATVIIG----DKFGIGGWVCDENEKMI 432
+ + S ++V P++ +V G + GGW+ E + ++
Sbjct: 1510 --EDASVLTRSSHRANVR-----WKKPVFPLVKCNFDAGFTGNNTQSTGGWIIPETKALL 1562
Query: 431 ----QAW 423
QAW
Sbjct: 1563 IAMQQAW 1569
>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
protein [Arabidopsis thaliana]
gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 343
Score = 60.8 bits (146), Expect = 7e-07
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Frame = -3
Query: 953 QRRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQAS 774
+RR I P C C + ET HLFF CF A+ +W+ + + + + + +
Sbjct: 46 KRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLL 105
Query: 773 STGNSSIARDRMQLSCYILWWLWKTRNLWIFQK--IKW-TVVDTIAGVVREWNE----MQ 615
S+ ++ L+ +ILW LWK+RN +FQ+ I W + V+EW + +Q
Sbjct: 106 SSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQ 165
Query: 614 NLNQ 603
+LNQ
Sbjct: 166 SLNQ 169
>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 1555
Score = 60.8 bits (146), Expect = 7e-07
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQASS- 771
R I++DP CK CG E+ITHL F C A+ +W +AP+ W S+
Sbjct: 1281 RHIDIDPRCKRCGSN-ESITHLLFHCQFAQRVWHLAPLATAPDFRGMIDLMADWPALSNL 1339
Query: 770 -----TGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGVV---REWN 624
TG +S L +I W +WK RN ++F+ + + DT++ + REW+
Sbjct: 1340 KALPPTGIAS-----GNLVPWIFWNIWKARNRFVFEGVSASPEDTLSSAIRLAREWS 1391
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 59.7 bits (143), Expect = 2e-06
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Frame = -3
Query: 950 RRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQAS- 774
RRG+ +DP C++CGE E+I H+ F C A+ +W ++ G+ +F FQ I A+
Sbjct: 1077 RRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALS-----GVPTSQFGFQNSSIFANI 1131
Query: 773 -----STGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGV---VREW 627
G I + ++LW LWK R+ F+ ++ + +I + V+EW
Sbjct: 1132 QYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEW 1188
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 59.7 bits (143), Expect = 2e-06
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Frame = -3
Query: 950 RRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQAS- 774
RRG+ +DP C++CG+ E+ H+ F C A+ +W ++ G+ EF FQ I A+
Sbjct: 851 RRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALS-----GVPTPEFGFQNASIFANI 905
Query: 773 ----STGNSSIARDRMQLSC-YILWWLWKTRNLWIFQKIKWTVVDTIAGV---VREWNEM 618
+ D ++ S ++LW LWK RN F I + +++I + EW +
Sbjct: 906 QFLFELKKMILVPDLVKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQA 965
Query: 617 QN 612
Q+
Sbjct: 966 QS 967
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 58.9 bits (141), Expect = 3e-06
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPV----QWEGILEDEFSFQRWWIQ 780
R I+ DPIC+ C ETI H+ F C + +W+ A + QW E + R IQ
Sbjct: 67 RNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNR-LIQ 125
Query: 779 ASSTGNSSIARDRMQLSCYILWWLWKTRNLWIF-QKIKWTVVDTIAGV--VREW---NEM 618
S T ++ + DR L +I+W LWK+RN+++F QK + + G+ EW NE
Sbjct: 126 LSKTQTTN-SLDRF-LPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANET 183
Query: 617 QNLNQSGLKKGKISLNQSGSSHVEPGLISEVGPIYTMVSATVIIGDKFGIGGWVCDE-NE 441
+ I ++ SS P G + + G + GW E N
Sbjct: 184 TENTNVHVATNPIQTSRRDSSQWNP---PPEGWVKCNFDSGYTQGSPYTRSGWTIRECNG 240
Query: 440 KMIQAWALSREMAKSSVEAALIGIRHSMLV 351
++ + + S+ A +G H++ V
Sbjct: 241 HIVLCGNAKLQSSTCSLHAEALGFLHALQV 270
>ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutrema salsugineum]
gi|557106756|gb|ESQ47071.1| hypothetical protein
EUTSA_v10028075mg [Eutrema salsugineum]
Length = 343
Score = 58.5 bits (140), Expect = 4e-06
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 950 RRGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQASS 771
RRGI++D CK+CG ETITH+ C A+ +W +AP++ + L S
Sbjct: 93 RRGIQVDFACKICGNP-ETITHVLRDCQLARKVWNLAPLRTQSHLNTVLCLDFLAHILSM 151
Query: 770 TGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGVV---REWNEMQN 612
I L +I W LW RN IF ++ + I + R W E Q+
Sbjct: 152 VSLPPIEVSTTSLPAWICWNLWTPRNHRIFSDTTYSAYEIITKAICDARAWQEAQS 207
>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 57.8 bits (138), Expect = 6e-06
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 12/210 (5%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIA--PVQWEGILEDEFSFQRWWIQAS 774
R + + C C +ET+ HL F+C A++ W I+ P+ G D +W+
Sbjct: 287 RHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNL 346
Query: 773 STGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGV---VREWNEMQNLNQ 603
GN + QL ++LW LWK RN +F+ ++ + + + EW
Sbjct: 347 GNGNPQWEK-ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAES 405
Query: 602 SGLKKGKISLNQSGSSHVEPGLISEVGPIYTMVSATVII-----GDKFGIGGWVCDENEK 438
G K +N+S P P + V ++ GI GWV NEK
Sbjct: 406 CGTKP---QVNRSSCGRWRP-------PPHQWVKCNTDATWNRDNERCGI-GWVL-RNEK 453
Query: 437 MIQAWALSREM--AKSSVEAALIGIRHSML 354
W +R + KS +EA L +R ++L
Sbjct: 454 GEVKWMGARALPKLKSVLEAELEAMRWAVL 483
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 57.8 bits (138), Expect = 6e-06
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQWEGILEDEFSFQRWWIQASST 768
RG+ ++ C MC E ET+ H+ FQC A+ +W + P+Q + F +
Sbjct: 805 RGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNC 864
Query: 767 GNSSIARDRMQLSCYILWWLWKTRNLWIFQ---KIKWTVVDTIAGVVREWNEMQNL 609
N+ ++ +S +I+W LWK RN +F+ + ++V +EW + L
Sbjct: 865 HNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHEL 920
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 57.8 bits (138), Expect = 6e-06
Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Frame = -3
Query: 947 RGIELDPICKMCGEGRETITHLFFQCFRAKMIWKIAPVQ--WEGILEDEFSFQRWWIQAS 774
RGI C C E ETI HL FQC A+ +W ++ +Q G FS IQ S
Sbjct: 1028 RGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNS 1087
Query: 773 STGNSSIARDRMQLSCYILWWLWKTRNLWIFQKIKWTVVDTIAGVVRE---WNEMQNLNQ 603
N I R +S ++LW +WK RN +FQ T + +A E W Q +
Sbjct: 1088 Q--NFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSS 1145
Query: 602 SGLKKGKISLN 570
G+ + N
Sbjct: 1146 GGVSPSEHKWN 1156