BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00034989
         (887 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_641659.1| hypothetical protein DDB_G0279493 [Dictyosteliu...    51   4e-06
ref|XP_004356613.1| RNA polymerase Rpb1 repeat containing protei...    55   9e-06

>ref|XP_641659.1| hypothetical protein DDB_G0279493 [Dictyostelium discoideum AX4]
           gi|60469697|gb|EAL67685.1| hypothetical protein
           DDB_G0279493 [Dictyostelium discoideum AX4]
          Length = 672

 Score = 50.8 bits (120), Expect(2) = 4e-06
 Identities = 33/114 (28%), Positives = 51/114 (44%)
 Frame = -2

Query: 517 PHSHNSHGDSESLSQTLLPMPMQNPLHIIPMQNLRTPTQQPQSPPEVSQTHTYKPTLSTI 338
           P    +   ++S +Q+  P P Q+P         ++PTQ P   P  S TH+  PT S  
Sbjct: 249 PTPSPTQSPTQSPTQSPTPSPTQSPTPSPTQSPTQSPTQSPTPSPTPSPTHS--PTQS-- 304

Query: 337 PYLSTEPEHLPTHSNINTAQKSPMHNTNQHPKTPRIRRRSQNNTKQTSPTRANP 176
                 P H PT S  ++  +SP H+  Q P     +  +Q+ T+  +PT   P
Sbjct: 305 ------PTHSPTQSPTHSPTQSPTHSPTQSPTHSPTQSPTQSPTQSPTPTPPTP 352



 Score = 26.9 bits (58), Expect(2) = 4e-06
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 771 SPLALPTVNLTWVPLLSIAPSTKTSPAHPITVQTTRQNSPNP*TRP 634
           SP   PT + T  P  S  PS   SP    T   T+  +P+P   P
Sbjct: 184 SPTQSPTQSPTQSPTPSPTPSPTPSPTQSPTQSPTQSPTPSPTQSP 229


>ref|XP_004356613.1| RNA polymerase Rpb1 repeat containing protein [Acanthamoeba
            castellanii str. Neff] gi|440803830|gb|ELR24713.1| RNA
            polymerase Rpb1 repeat containing protein [Acanthamoeba
            castellanii str. Neff]
          Length = 2211

 Score = 54.7 bits (130), Expect(2) = 9e-06
 Identities = 39/148 (26%), Positives = 61/148 (41%)
 Frame = -2

Query: 523  QPPHSHNSHGDSESLSQTLLPMPMQNPLHIIPMQNLRTPTQQPQSPPEVSQTHTYKPTLS 344
            Q P +  +   + S +Q+  P P  +P H+ P     TPTQ P   P  S T +  PT++
Sbjct: 974  QTPTNSPTQSPTPSSTQSPTPSPTNSPTHVTPTV---TPTQSPTQSPTQSSTPSVTPTVT 1030

Query: 343  TIPYLSTEPEHLPTHSNINTAQKSPMHNTNQHPKTPRIRRRSQNNTKQTSPTRANPSLDP 164
                 +  P   PT S   +  +SP  +  Q P     +  +Q+ T   +PT   P+  P
Sbjct: 1031 PTVTPTQSPTKSPTPSPTQSPTQSPTQSPTQSPTNSPTQSPTQSPTPSVTPT-VTPTQSP 1089

Query: 163  ILNTSLKRNLNSDPDHETTQTNTLPKKP 80
                S  ++    P    T T T  + P
Sbjct: 1090 --TNSPTQSPTQSPTPSVTPTVTPTRSP 1115



 Score = 21.9 bits (45), Expect(2) = 9e-06
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 774  HSPLALPTVNLTWVPLLSIAPSTKTSPAHPITVQTTRQNSPNP*TRPMTIHSTQT 610
            +SP   PT++ T  P  S   S   SP +  T   T+  + +P T+  T   TQ+
Sbjct: 896  NSPTQSPTLSPTNSPTQSPTQSPTQSPTNSPTRSPTQSPTNSP-TQSPTQSPTQS 949