BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00033898
         (554 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   165   5e-49
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   152   3e-48
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   158   3e-47
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   156   2e-46
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   153   5e-46
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   158   1e-45
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   155   2e-45
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  149   2e-44
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   153   2e-44
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   148   2e-44
gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subc...   152   4e-44
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   149   4e-44
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   152   5e-44
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   152   6e-44
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     149   1e-43
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   145   2e-43
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  145   2e-43
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   147   2e-43
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   154   2e-43
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc...   149   2e-43

>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score =  165 bits (417), Expect(2) = 5e-49
 Identities = 75/119 (63%), Positives = 93/119 (78%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L  FF   GI H +SCP+T QQNG AERK+ HIVEVGLALLA S +P++
Sbjct: 578 MQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLK 637

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF S+VYLINRTPS++LH +SP E L G+KPDY + R FGC C+P+LR YNKHKL
Sbjct: 638 FWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKL 696



 Score = 55.5 bits (132), Expect(2) = 5e-49
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVVFDESVIPFANIEPS 47
           FRS  CTF+GY T +KG+K L P   ++ I+RDVVFDE+  PF  + P+
Sbjct: 698 FRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKLHPN 746


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  152 bits (384), Expect(2) = 3e-48
 Identities = 70/121 (57%), Positives = 91/121 (75%)
 Frame = -1

Query: 554 KMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLP 375
           K VQSD GGE+ + +Q+  ++GI HRISCPYT +QNGLAERK+ HIVE G+ALLAQ+ LP
Sbjct: 627 KAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLP 686

Query: 374 MRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHK 195
            ++W +AF +SVYLINR P+ +L   SP E L   KP Y+  + FGC+CYP+LR +N HK
Sbjct: 687 FKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHK 746

Query: 194 L 192
           L
Sbjct: 747 L 747



 Score = 65.5 bits (158), Expect(2) = 3e-48
 Identities = 29/58 (50%), Positives = 39/58 (67%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANIEPSQPKTPISSVS 17
           FRS PCTF+GY  ++KGYK L P+  I+I+RDV+FDE   PFA ++  +  T   S S
Sbjct: 749 FRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAFPFAQLQSQKQXTSSFSSS 806


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  158 bits (399), Expect(2) = 3e-47
 Identities = 68/121 (56%), Positives = 95/121 (78%)
 Frame = -1

Query: 554 KMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLP 375
           K  Q+D GGEF +L  +F+ +GI HR+SCP+T +QNG+ ERK+ HIVE+GL LLAQ+ LP
Sbjct: 439 KTFQTDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLP 498

Query: 374 MRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHK 195
           +++WPDAF ++V+LINR P+++L    P+E L  +KP+Y+  + FGCLC+PHLR YNKHK
Sbjct: 499 LKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHK 558

Query: 194 L 192
           L
Sbjct: 559 L 559



 Score = 56.6 bits (135), Expect(2) = 3e-47
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFAN 59
           FRS PCTF+GY + +KGYK L    ++ I+R VVFDE+  PFA+
Sbjct: 561 FRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVVFDETRFPFAD 604


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score =  156 bits (394), Expect(2) = 2e-46
 Identities = 71/119 (59%), Positives = 89/119 (74%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +QSD GGE+  L  FF   GI H +SCP+T QQNG AERK+ HIVEVGL LLA S +P++
Sbjct: 580 MQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLK 639

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++VYLINRTP+K+L +++P E L    PDY+S R FGC C+PHLR YN HKL
Sbjct: 640 FWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKL 698



 Score = 55.5 bits (132), Expect(2) = 2e-46
 Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVVFDESVIPFANI 56
           FRSK CTF+GY T +KG+K L P   ++ I+RDV+FDE+  PFA +
Sbjct: 700 FRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPFAKL 745


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108706314|gb|ABF94109.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1247

 Score =  153 bits (386), Expect(2) = 5e-46
 Identities = 71/119 (59%), Positives = 87/119 (73%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +QSD GGE+  L+ FF   GI H +SCP+T QQNG AERK+ HIVE+GLALLA S +P++
Sbjct: 378 MQSDWGGEYEKLNSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYSSMPLK 437

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF S+VYLINRTPS++L Y +P E L    PDY   R FGC C+PHLR YN  KL
Sbjct: 438 FWDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYNLLRVFGCACWPHLRPYNARKL 496



 Score = 57.4 bits (137), Expect(2) = 5e-46
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVVFDESVIPFANIEPS 47
           FRSK CTF+GY   +KG+K L P   ++ I+ DV+FDE+V PFA++ P+
Sbjct: 498 FRSKQCTFLGYSPLHKGFKCLDPSTGRVYISHDVIFDENVFPFASLHPN 546


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  158 bits (399), Expect(2) = 1e-45
 Identities = 72/118 (61%), Positives = 92/118 (77%)
 Frame = -1

Query: 545 QSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMRF 366
           QSD GGE+  L+  F+T GIHH++SCP+T QQNG AERK+ HIVEVGLALLAQS +P+++
Sbjct: 581 QSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKY 640

Query: 365 WPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           W  AF ++VYLINRTPSK + + +P   L G  PDY+S R FGC C+P+LR YN+HKL
Sbjct: 641 WDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKL 698



 Score = 51.2 bits (121), Expect(2) = 1e-45
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRS  C F+GY   +KG+K L +   +I I+RDVVFDE V PFA++
Sbjct: 700 FRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASL 745


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  155 bits (392), Expect(2) = 2e-45
 Identities = 67/118 (56%), Positives = 92/118 (77%)
 Frame = -1

Query: 545  QSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMRF 366
            Q D GGEF +L  +F+ +GI HR+SCP+T +QNG+ ERK+ HIVE+GL LLAQ+ LP+++
Sbjct: 688  QXDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKY 747

Query: 365  WPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
            WPDAF + V+LINR P+++L    P+E L  +KP+Y+  + FGCLC+PHLR YNKHKL
Sbjct: 748  WPDAFSTXVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKL 805



 Score = 53.1 bits (126), Expect(2) = 2e-45
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPF 65
           FRS PCTF+GY + +KGYK L    ++ I+R V FDE+  PF
Sbjct: 807 FRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVXFDETKFPF 848


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  149 bits (375), Expect(2) = 2e-44
 Identities = 66/119 (55%), Positives = 86/119 (72%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERK+ HI+EVGL+LL+ + +P++
Sbjct: 580 MQTDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLK 639

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PSK +   +P E L   KPDY S R FGC C+PHLR YN HKL
Sbjct: 640 FWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKL 698



 Score = 56.6 bits (135), Expect(2) = 2e-44
 Identities = 23/46 (50%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+G+ TH+KG+K L +   ++ I+RDVVFDE++ PF+ +
Sbjct: 700 FRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENIFPFSTL 745


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1478

 Score =  153 bits (386), Expect(2) = 2e-44
 Identities = 67/119 (56%), Positives = 91/119 (76%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+ +L+ FF   GI H +SCP+T QQNG AERK+ HIVE+GL+LL+ + +P++
Sbjct: 607 MQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLK 666

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PS+++H ISP E L   KPDY+S R FGC C+P+LR YN HKL
Sbjct: 667 FWDEAFQAATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKL 725



 Score = 52.0 bits (123), Expect(2) = 2e-44
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+G+ T +KG+K L +   +I I+RDVVFDE++ PF  +
Sbjct: 727 FRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFPFTEL 772


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score =  148 bits (374), Expect(2) = 2e-44
 Identities = 68/119 (57%), Positives = 86/119 (72%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERK+ HIVEVGL+LLA + LP++
Sbjct: 409 MQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLK 468

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +A+ S VYLINR P+K+L Y SP E L    PDY + R FGC C+P LR YN HK+
Sbjct: 469 FWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKM 527



 Score = 56.6 bits (135), Expect(2) = 2e-44
 Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEPS 47
           FRSK CTF+GY   +KG++ L     +I I+RDVVFDESV PFA + P+
Sbjct: 529 FRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFPFAELNPN 577


>gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1001

 Score =  152 bits (384), Expect(2) = 4e-44
 Identities = 67/120 (55%), Positives = 90/120 (75%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L+ FF   GI HR+SCP+  QQNG AERK+ HIVEVGLALLA + +P++
Sbjct: 319 MQTDWGGEYEKLNSFFTKIGISHRVSCPHAHQQNGAAERKHRHIVEVGLALLAHASMPLK 378

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKLI 189
           FW +AFC++ YLINRTP+K +++ +P E L   KP+Y S R FGC C+P+LR YN  KL+
Sbjct: 379 FWDEAFCTATYLINRTPAKTINFDTPLERLFHQKPEYASLRTFGCACWPNLRPYNSKKLV 438



 Score = 52.0 bits (123), Expect(2) = 4e-44
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEPS 47
           FRS  C F+GY   YKG+K L +   +I I+RDV+F E+V PFA + P+
Sbjct: 439 FRSTQCVFLGYSRLYKGFKCLHVSTGRIYISRDVIFYENVFPFAKLHPN 487


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 900

 Score =  149 bits (375), Expect(2) = 4e-44
 Identities = 69/121 (57%), Positives = 89/121 (73%)
 Frame = -1

Query: 554 KMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLP 375
           K VQ+D GGE+  L+ FFQ  GI H +SCP+  QQNG AERK+ HIVEVGL+LLA + +P
Sbjct: 11  KSVQTDWGGEYQRLNSFFQRIGISHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMP 70

Query: 374 MRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHK 195
           ++FW +AF ++ YLINRTP KI+HY +P   L   +PDY + R FGC C+P+LR YN HK
Sbjct: 71  LKFWDEAFLTATYLINRTPMKIIHYDTP-AYLFEEQPDYNALRTFGCACWPNLRPYNTHK 129

Query: 194 L 192
           L
Sbjct: 130 L 130



 Score = 55.5 bits (132), Expect(2) = 4e-44
 Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEPS 47
           FRSK C F+GY   +KG+K L +   ++ I+RDVVFDE++ PFA + P+
Sbjct: 132 FRSKQCVFLGYSPLHKGFKCLEVNSGRVYISRDVVFDENIFPFAQLRPN 180


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score =  152 bits (383), Expect(2) = 5e-44
 Identities = 67/119 (56%), Positives = 90/119 (75%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+ +L+ FF   GI H +SCP+T QQNG AERK+ HIVE+GL+LL+ + +P++
Sbjct: 574 MQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLK 633

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF  + YLINR PS+++H ISP E L   KPDY+S R FGC C+P+LR YN HKL
Sbjct: 634 FWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKL 692



 Score = 52.0 bits (123), Expect(2) = 5e-44
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+G+ T +KG+K L +   +I I+RDVVFDE++ PF  +
Sbjct: 694 FRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFPFTEL 739


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1145

 Score =  152 bits (385), Expect(2) = 6e-44
 Identities = 67/119 (56%), Positives = 90/119 (75%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+ AL+ FF   GI H +SCP+T QQNG AERK+ HIVEVGL+LL+ +H+P++
Sbjct: 450 MQTDWGGEYRALNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLK 509

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PS+++   +P E     KPDY+S R FGC C+P+LR YNKHKL
Sbjct: 510 FWDEAFQAATYLINRVPSRVIQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKL 568



 Score = 50.8 bits (120), Expect(2) = 6e-44
 Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+G+   +KG+K L +   ++ I+RDVVFDE++ PF+ +
Sbjct: 570 FRSKRCAFLGFSNMHKGFKCLDISSGRVYISRDVVFDENIFPFSEL 615


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  149 bits (377), Expect(2) = 1e-43
 Identities = 68/119 (57%), Positives = 87/119 (73%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L  FF   GI H +SCP+T QQNG AERK+ HIVEVGL+LLA + +P++
Sbjct: 571 MQTDWGGEYEKLHDFFTKIGISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLK 630

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINRTPSK++ Y +P E L   KP YTS R FGC C+P+LR YN  KL
Sbjct: 631 FWDEAFIAATYLINRTPSKVIQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKL 689



 Score = 53.1 bits (126), Expect(2) = 1e-43
 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+GY   +KG+K L +   ++ I+RDVVFDE+V PFA++
Sbjct: 691 FRSKQCVFLGYSNLHKGFKCLDVAAGRVYISRDVVFDENVFPFASL 736


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
           sativa Japonica Group]
          Length = 1448

 Score =  145 bits (365), Expect(2) = 2e-43
 Identities = 64/119 (53%), Positives = 85/119 (71%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERK+ HI+EVGL+LL+ + +P++
Sbjct: 583 MQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLK 642

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PSK +   +P E L   KPDY+S R F C C+PHL  YN HKL
Sbjct: 643 FWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKL 701



 Score = 57.0 bits (136), Expect(2) = 2e-43
 Identities = 24/46 (52%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+G+ TH+KG+K L +   ++ I+RDVVFDE+V PF+ +
Sbjct: 703 FRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFSTL 748


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  145 bits (365), Expect(2) = 2e-43
 Identities = 64/119 (53%), Positives = 85/119 (71%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L+ FF   GI H +SCP+T QQNG AERK+ HI+EVGL+LL+ + +P++
Sbjct: 583 MQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLK 642

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PSK +   +P E L   KPDY+S R F C C+PHL  YN HKL
Sbjct: 643 FWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKL 701



 Score = 57.0 bits (136), Expect(2) = 2e-43
 Identities = 24/46 (52%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+G+ TH+KG+K L +   ++ I+RDVVFDE+V PF+ +
Sbjct: 703 FRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFSTL 748


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score =  147 bits (371), Expect(2) = 2e-43
 Identities = 65/119 (54%), Positives = 86/119 (72%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE++ L  FF   GI H +SCP+T QQNG  ERK+ HIVEVGL+LLA + +P++
Sbjct: 567 MQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLAHASMPLK 626

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PSK++ + +P E L    PDY S R FGC C+P+LR YN HKL
Sbjct: 627 FWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYKSLRTFGCACWPNLRPYNTHKL 685



 Score = 54.7 bits (130), Expect(2) = 2e-43
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEPS 47
           FRSK C F+G+   +KG+K L +   ++ ++RDV FDE V PFAN+ P+
Sbjct: 687 FRSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTFDEQVFPFANLHPN 735


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score =  154 bits (390), Expect(2) = 2e-43
 Identities = 71/122 (58%), Positives = 91/122 (74%), Gaps = 2/122 (1%)
 Frame = -1

Query: 554 KMVQSDGGGEFIA--LSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSH 381
           K+ QSDGGGEF++  L      HGIHHRISCPYTPQQNGLAERK+ H+VE+GL++L  SH
Sbjct: 576 KVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSH 635

Query: 380 LPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNK 201
            P +FW ++F ++ Y+INR PS +L  +SP+EAL G KPDY+S R FG  CYP LR   +
Sbjct: 636 TPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQ 695

Query: 200 HK 195
           +K
Sbjct: 696 NK 697



 Score = 47.4 bits (111), Expect(2) = 2e-43
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = -2

Query: 187 RSKPCTFIGYDTHYKGYKVLL-PDNKIIITRDVVFDESVIPF 65
           RS  C F+GY++ YKGY+    P  K+ I+R+V+F+ES +PF
Sbjct: 701 RSLQCVFLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPF 742


>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1016

 Score =  149 bits (377), Expect(2) = 2e-43
 Identities = 67/119 (56%), Positives = 87/119 (73%)
 Frame = -1

Query: 548 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 369
           +Q+D GGE+  L  FF   GI H +SCPY  QQNG AERK+ HIVEVGLALLA + +P++
Sbjct: 191 MQTDWGGEYEKLHSFFTKIGISHHVSCPYAHQQNGSAERKHRHIVEVGLALLAHASVPLK 250

Query: 368 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 192
           FW +AF ++ YLINR PSK++ Y +P E L   KP+Y++ R FGC C+P+LR YNK KL
Sbjct: 251 FWDEAFLAATYLINRLPSKVIQYSAPLERLLDQKPNYSALRTFGCACWPNLRPYNKRKL 309



 Score = 52.0 bits (123), Expect(2) = 2e-43
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = -2

Query: 190 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 56
           FRSK C F+GY   +KG+K L +   ++ I+RDVVFDE+V PF+ +
Sbjct: 311 FRSKQCVFLGYSNIHKGFKCLDVSTGRVYISRDVVFDENVFPFSKL 356