BLASTX nr result
ID: Rehmannia22_contig00033647
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00033647
(354 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 80 2e-13
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 80 4e-13
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 79 5e-13
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 73 3e-11
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 72 6e-11
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 72 6e-11
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ... 72 1e-10
gb|EEE63282.1| hypothetical protein OsJ_18092 [Oryza sativa Japo... 72 1e-10
gb|AAV43829.1| hypothetical protein [Oryza sativa Japonica Group... 72 1e-10
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 71 2e-10
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 71 2e-10
gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea] 70 2e-10
gb|EMJ25902.1| hypothetical protein PRUPE_ppa025398mg, partial [... 70 4e-10
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 70 4e-10
gb|AAD22286.1| putative non-LTR retroelement reverse transcripta... 69 7e-10
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 67 3e-09
gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [... 65 7e-09
gb|EEE59920.1| hypothetical protein OsJ_12548 [Oryza sativa Japo... 65 7e-09
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi... 65 7e-09
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ... 65 7e-09
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 80.5 bits (197), Expect = 2e-13
Identities = 49/119 (41%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKR + I QAWN R L K+ CR AL W K NS+ I + +
Sbjct: 245 DKRLFNQPNVKETIVQAWNGSQRNENLLVLD-KLKHCRSALSRWKKENNINSSTRITQAR 303
Query: 173 ARLSDIRTNGF--SDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L +++GF +D F +LK L KA DEE +WSQK+R+KW+ GDKN+ FFHA
Sbjct: 304 AALELEQSSGFPRADLVF---SLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHA 359
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 79.7 bits (195), Expect = 4e-13
Identities = 45/117 (38%), Positives = 65/117 (55%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKR + I+QAWN R + Q +++ CR AL W + +NS I + +
Sbjct: 209 DKRLFNQPLVKEAIQQAWNGNQRVGGM-QVLERLKKCRSALSRWKQENNSNSLTCISQAR 267
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L +++GF + LK L KA +DEE +WSQK+R+KW+ GDKN+ FFHA
Sbjct: 268 AALELEQSSGFPRSKVVF-TLKNDLCKANQDEETFWSQKSRAKWMHGGDKNTSFFHA 323
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 79.3 bits (194), Expect = 5e-13
Identities = 48/117 (41%), Positives = 62/117 (52%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKRW+ +G+ I Q WN + G QF +K+ CR A+ W KS I+ K
Sbjct: 27 DKRWIGKDGLLEAISQGWNLD-SGFREGQFVEKLTNCRRAISKWRKSLIPFGRQTIEDLK 85
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L D+ + L L +AY+DEE YW QK+RS W+K GD NSKFFHA
Sbjct: 86 AEL-DVAQRDDDRSREEITELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKFFHA 141
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 73.2 bits (178), Expect = 3e-11
Identities = 38/117 (32%), Positives = 62/117 (52%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKRW+Q EG ++ W+ + T + KI CR + W + + +SAV I +
Sbjct: 243 DKRWVQREGFKDLLCNFWSQQSTKTNALMME-KIASCRREISKWKRVSKPSSAVRIQELQ 301
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
+L D T + LK L + Y +EE +W +K+R W+++GD+N+K+FHA
Sbjct: 302 FKL-DAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHA 357
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 72.4 bits (176), Expect = 6e-11
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKR+L E + I + W+ GT + ++ CR +L +W K NS I++ +
Sbjct: 206 DKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLE 264
Query: 173 ARLSDIRTNGFSDKW--FDWCN-LKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L + S W F + LK L KAY++EE YW QK+R KWL+ G++NSK+FHA
Sbjct: 265 AALEKEQ----SLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHA 320
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 72.4 bits (176), Expect = 6e-11
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKR+L E + I + W+ GT + ++ CR +L +W K NS I++ +
Sbjct: 209 DKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLE 267
Query: 173 ARLSDIRTNGFSDKW--FDWCN-LKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L + S W F + LK L KAY++EE YW QK+R KWL+ G++NSK+FHA
Sbjct: 268 AALEKEQ----SLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHA 323
>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1197
Score = 71.6 bits (174), Expect = 1e-10
Identities = 39/117 (33%), Positives = 61/117 (52%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
D+R + E I +I AWN ++ + ++K+ CR A+I+W+K + NS II+ K
Sbjct: 241 DRRLKENEEIKDLIAAAWNEDLSDSV----EKKLSRCRRAIISWTKETQRNSQKIIEALK 296
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
+L +D + L AY EE +W Q++R WL GD+NS +FHA
Sbjct: 297 VKLEQAMVIPVNDVCL-LVQINSELSAAYLAEEAFWKQRSRQNWLSLGDQNSGYFHA 352
>gb|EEE63282.1| hypothetical protein OsJ_18092 [Oryza sativa Japonica Group]
Length = 763
Score = 71.6 bits (174), Expect = 1e-10
Identities = 37/113 (32%), Positives = 60/113 (53%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W + E D +++QAW L F+ K+ L+ WSKSK N I+ + +L
Sbjct: 545 WEREESFDSVVQQAWGEGEVVRNLGDFKTKMAYTMDELVKWSKSKIGNIKKGIESRRKKL 604
Query: 164 SDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
++R G D + +K L + + EE +W Q+++ WLK+GDKN+K+FH
Sbjct: 605 GELRMAGMLDSEPEVKKIKEQLQEMLRREEIWWRQRSQITWLKEGDKNTKYFH 657
>gb|AAV43829.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55168037|gb|AAV43905.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 796
Score = 71.6 bits (174), Expect = 1e-10
Identities = 37/113 (32%), Positives = 60/113 (53%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W + E D +++QAW L F+ K+ L+ WSKSK N I+ + +L
Sbjct: 578 WEREESFDSVVQQAWGEGEVVRNLGDFKTKMAYTMDELVKWSKSKIGNIKKGIESRRKKL 637
Query: 164 SDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
++R G D + +K L + + EE +W Q+++ WLK+GDKN+K+FH
Sbjct: 638 GELRMAGMLDSEPEVKKIKEQLQEMLRREEIWWRQRSQITWLKEGDKNTKYFH 690
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/117 (30%), Positives = 62/117 (52%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKR L+ ++ WN I G + ++ CR A+ NS + I++ +
Sbjct: 624 DKRLLEVPHFKTYVKAGWNKAINGQRKH-LPDQVRTCRQAMAKLKHKSNLNSRIRINQLQ 682
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L ++ + +++ L AY+DEE YW QK+R++W+K+GD+N++FFHA
Sbjct: 683 AALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHA 739
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/117 (30%), Positives = 62/117 (52%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
DKR L+ ++ WN I G + ++ CR A+ NS + I++ +
Sbjct: 604 DKRLLEVPHFKTYVKAGWNKAINGQRKH-LPDQVRTCRQAMAKLKHKSNLNSRIRINQLQ 662
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
A L ++ + +++ L AY+DEE YW QK+R++W+K+GD+N++FFHA
Sbjct: 663 AALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHA 719
>gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]
Length = 381
Score = 70.5 bits (171), Expect = 2e-10
Identities = 40/105 (38%), Positives = 57/105 (54%)
Frame = -2
Query: 317 IIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARLSDIRTNGFS 138
+I WNS I G + +I CR A+ W K+K TNSA I A + + ++
Sbjct: 57 VIIDGWNSTIPGQHV-SVSDRIRKCRHAISQWKKAKNTNSAKRIKALTALIDEAHSDPLC 115
Query: 137 DKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
+ NL+ L +AYKDEE +W K+R +WL GD+N +FFHA
Sbjct: 116 PL-SEIHNLRKELLQAYKDEEAFWRNKSRIQWLTYGDRNIRFFHA 159
>gb|EMJ25902.1| hypothetical protein PRUPE_ppa025398mg, partial [Prunus persica]
Length = 320
Score = 69.7 bits (169), Expect = 4e-10
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W Q E + II AWN+ GT +YQ +KI R+ L+ W +S + I R +++L
Sbjct: 3 WTQHEDCESIIANAWNTSFTGTLMYQVCEKIKTTRIQLMQWQRSMFGTTKAEIQRVRSQL 62
Query: 164 SDI-RTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSK 15
+ R + + L LD EE +W Q+++ WLK+GD+N++
Sbjct: 63 DVVWRQPNSENTTATYHLLMSQLDSLLSREEAFWKQRSKVSWLKEGDRNTR 113
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 69.7 bits (169), Expect = 4e-10
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQ---FQQKIGICRLALINWSKSKRTNSAVIID 183
D+R + + ++++AWN LY ++KI CRL ++ WS++K+ +S +I+
Sbjct: 80 DRRLKNNDEVTALVQEAWN-------LYDTDIVEEKISRCRLEIVKWSRAKQQSSQKLIE 132
Query: 182 RCKARLSD-IRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
+ +L + + + + + N +L AYK EE YW Q++R WL GDKNS +FH
Sbjct: 133 ENRQKLEEAMSSQDHNQELLSTINTNLLL--AYKAEEEYWKQRSRQLWLALGDKNSGYFH 190
Query: 5 A 3
A
Sbjct: 191 A 191
>gb|AAD22286.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1311
Score = 68.9 bits (167), Expect = 7e-10
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
D+R + + ++ +WNS + T +I CR ++I WSK NS V I +
Sbjct: 558 DRRLKDNDEVKKLVLDSWNSNLSATV----DHRIFACRSSIILWSKQHHLNSQVEIFTLR 613
Query: 173 ARLSD-IRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
+L D I +N + D N + L AY+ E+ +W Q++R+ WL GDKNS FFHA
Sbjct: 614 EQLEDEISSNSSPQEEIDSINTR--LLSAYQREKAFWKQRSRNLWLALGDKNSGFFHA 669
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 66.6 bits (161), Expect = 3e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Frame = -2
Query: 353 DKRWLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCK 174
D+R + E I ++++ W + + LY KI CR ++I W+K + +NSA I + +
Sbjct: 187 DRRLREKEEIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSAKAIKKAQ 242
Query: 173 ARLSDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFHA 3
L + D ++ L+ AY+ EE +W Q +R +WL GD+N +FHA
Sbjct: 243 QALESALSADIPDPSLIG-SITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHA 298
>gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [Prunus persica]
Length = 1146
Score = 65.5 bits (158), Expect = 7e-09
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W II++ W ++I G + +G+CR L WSK K N+ I+ L
Sbjct: 154 WADEHDCGTIIQRGWKNDIVGDSFAALSANLGVCREELQKWSKEKFPNNLSRINLLMKSL 213
Query: 164 SDIRTNGFSDKW-FDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
S++++ + + + + + EE YW Q++R WL GD N+KFFH
Sbjct: 214 SNLQSGPLEENYRHQESAIWDEMSVLWSREETYWKQRSRLNWLSAGDANTKFFH 267
>gb|EEE59920.1| hypothetical protein OsJ_12548 [Oryza sativa Japonica Group]
Length = 1076
Score = 65.5 bits (158), Expect = 7e-09
Identities = 32/113 (28%), Positives = 58/113 (51%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W + + +I++AW + L K+ + L++WSK K N I + +L
Sbjct: 10 WERESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKL 69
Query: 164 SDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
++R G D + ++K L++ EE +W Q++R WLK+GD N+++FH
Sbjct: 70 GELRNIGLLDTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFH 122
>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 65.5 bits (158), Expect = 7e-09
Identities = 32/113 (28%), Positives = 58/113 (51%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W + + +I++AW + L K+ + L++WSK K N I + +L
Sbjct: 204 WERESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKL 263
Query: 164 SDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
++R G D + ++K L++ EE +W Q++R WLK+GD N+++FH
Sbjct: 264 GELRNIGLLDTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFH 316
>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 65.5 bits (158), Expect = 7e-09
Identities = 32/113 (28%), Positives = 58/113 (51%)
Frame = -2
Query: 344 WLQWEGIDLIIEQAWNSEIRGTALYQFQQKIGICRLALINWSKSKRTNSAVIIDRCKARL 165
W + + +I++AW + L K+ + L++WSK K N I + +L
Sbjct: 229 WERESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKL 288
Query: 164 SDIRTNGFSDKWFDWCNLKGVLDKAYKDEEGYWSQKARSKWLKDGDKNSKFFH 6
++R G D + ++K L++ EE +W Q++R WLK+GD N+++FH
Sbjct: 289 GELRNIGLLDTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFH 341