BLASTX nr result

ID: Rehmannia22_contig00033382 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00033382
         (433 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    82   6e-14
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    82   1e-13
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626...    81   2e-13
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A...    81   2e-13
ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617...    80   2e-13
gb|EMJ18111.1| hypothetical protein PRUPE_ppa019032mg, partial [...    80   2e-13
ref|XP_004298091.1| PREDICTED: uncharacterized protein LOC101303...    80   3e-13
ref|XP_002454801.1| hypothetical protein SORBIDRAFT_04g037700 [S...    80   3e-13
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                80   3e-13
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia...    80   4e-13
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    79   5e-13
ref|XP_006296178.1| hypothetical protein CARUB_v10025338mg [Caps...    79   6e-13
ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Caps...    79   6e-13
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    79   6e-13
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    77   2e-12
gb|ABA98898.1| retrotransposon protein, putative, unclassified [...    77   3e-12
gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indi...    77   3e-12
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    76   4e-12
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    76   5e-12
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    76   5e-12

>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
 Frame = -3

Query: 362  QIERIWN-------KVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIE 204
            Q + +WN        +WKL I  K+K+ LWR I+ +LPT + L+ RG+ +DP C  C  E
Sbjct: 1347 QDKLVWNYSSSGDYTLWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTE 1406

Query: 203  QETTQHVFFQCERAQLIWKLSPIQWF--DTLRPNFTMKKWWYALCEIKESAINTARIQLS 30
            +ET  HV F C  A  IW LS   W    T   + T +   + +     + +NT +    
Sbjct: 1407 EETINHVLFTCPYAASIWGLSNFPWLPGHTFSQD-TEENISFLINSFSNNTLNTEQRLAP 1465

Query: 29   VYLLWWLWK 3
             +L+W LWK
Sbjct: 1466 FWLIWRLWK 1474


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = -3

Query: 338 VWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQCERAQ 159
           +WKL++  K+KHFLWR +T +L T T L  R +  DPIC  C IE+ET  H+ F C   Q
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 158 LIWKLSPIQWFDTLRPNFTMKKWWYALCEI-KESAINTARIQLSVYLLWWLWK 3
            +W+ + I   +   P  + +     L ++ K    N+    L  +++W LWK
Sbjct: 97  SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWK 149


>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
          Length = 1452

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 40/128 (31%), Positives = 69/128 (53%)
 Frame = -3

Query: 389  PETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCG 210
            PE+SN       R+W   W L++  K+K F+WR + + LPTA  L +R    +PIC  C 
Sbjct: 1123 PESSNSSS----RLWKIPWMLDLPEKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCK 1178

Query: 209  IEQETTQHVFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLS 30
            ++ ET  HV  +C+ A+ IW L+P+     ++P+    + +++  +   S  +TA  +L 
Sbjct: 1179 LQVETVSHVLIECKAARKIWDLAPL----IVQPSKDHNQDFFSAIQEMWSRSSTAEAELM 1234

Query: 29   VYLLWWLW 6
            +   W +W
Sbjct: 1235 IVYCWVIW 1242


>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 765

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 40/128 (31%), Positives = 69/128 (53%)
 Frame = -3

Query: 389 PETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCG 210
           PE+SN       R+W   W L++  K+K F+WR + + LPTA  L +R    +PIC  C 
Sbjct: 436 PESSNSSS----RLWKIPWMLDLPEKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCK 491

Query: 209 IEQETTQHVFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLS 30
           ++ ET  HV  +C+ A+ IW L+P+     ++P+    + +++  +   S  +TA  +L 
Sbjct: 492 LQVETVSHVLIECKAARKIWDLAPL----IVQPSKDHNQDFFSAIQEMWSRSSTAEAELM 547

Query: 29  VYLLWWLW 6
           +   W +W
Sbjct: 548 IVYCWVIW 555


>ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
          Length = 440

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 39/116 (33%), Positives = 62/116 (53%)
 Frame = -3

Query: 350 IWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQC 171
           IWN++W+L + SK+KHF+WR +T  LPT   L+++ V++ P C  C    E+  H+  QC
Sbjct: 122 IWNQLWRLEVPSKVKHFMWRALTDVLPTTENLLKKYVEVPPACITCHASSESICHILLQC 181

Query: 170 ERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLSVYLLWWLWK 3
             A+  W  S I +F        +  W  AL     +  +  + QL+V + W LW+
Sbjct: 182 PFARTCWMTSSIGFFG---DGSNLLLWLEALF----NRYSLEQTQLAVMICWSLWQ 230


>gb|EMJ18111.1| hypothetical protein PRUPE_ppa019032mg, partial [Prunus persica]
          Length = 162

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 45/128 (35%), Positives = 63/128 (49%)
 Frame = -3

Query: 386 ETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGI 207
           E  N    Q    W+  WKL +  K+K F+WR + +SL    AL  + + +  +C LC  
Sbjct: 26  EGENSTRTQHHEGWSGNWKLQLPPKIKFFMWRGLMNSL----ALRCKRIDVPNVCPLCTT 81

Query: 206 EQETTQHVFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLSV 27
           E ET QHVFF CE A+      P+Q  DT      MK  W  L   ++   +   +QL  
Sbjct: 82  EGETQQHVFFDCEFARAFLFACPLQLDDTRLGQSNMKACWEFLEWTQDQENSIEFMQLMA 141

Query: 26  YLLWWLWK 3
           + LWW+WK
Sbjct: 142 FGLWWIWK 149


>ref|XP_004298091.1| PREDICTED: uncharacterized protein LOC101303799 [Fragaria vesca
           subsp. vesca]
          Length = 351

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 40/129 (31%), Positives = 68/129 (52%)
 Frame = -3

Query: 392 APETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLC 213
           A  +S+ GG     IW KVWK+N+  K++   WR++   LPT   L ++GV +   C  C
Sbjct: 80  ASSSSSQGGWGF--IWKKVWKVNVPPKVRMHAWRILKEVLPTKWVLKKKGVDLGVECPFC 137

Query: 212 GIEQETTQHVFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQL 33
           G ++E   H+F  C     +WK S +    +  P   +K W   LC++ E  ++  ++++
Sbjct: 138 GGDKEDGLHIFKNCGVVNQLWKCSSLTSTPSTHPAMEIKAW---LCDMVE-LMHVKKLEV 193

Query: 32  SVYLLWWLW 6
            +Y LW +W
Sbjct: 194 FLYTLWAIW 202


>ref|XP_002454801.1| hypothetical protein SORBIDRAFT_04g037700 [Sorghum bicolor]
           gi|241934632|gb|EES07777.1| hypothetical protein
           SORBIDRAFT_04g037700 [Sorghum bicolor]
          Length = 322

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
 Frame = -3

Query: 425 QLIQERLWRKDAPETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQR 246
           +L ++R   +    +S+GGG      WN++WKL    K+KHFLWR+  ++LP    L +R
Sbjct: 28  KLREQRCLTRAGTGSSDGGGD----FWNRLWKLECPPKVKHFLWRMSHNTLPVKRMLSRR 83

Query: 245 GVKMDPICTLCGIEQETTQHVFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCE-- 72
           GVK D +C +C    +   H+FF+C+ A+  W+               +++   AL E  
Sbjct: 84  GVKTDTLCNMCNRLDKDGAHLFFKCKEAKTAWR------------ELNLERIRCALTEAG 131

Query: 71  ----IKESAIN-TARIQLSVYLLWWLW 6
               + E+ +    + QL+V LL W+W
Sbjct: 132 SARGVMETILKLKGKEQLTVILLLWMW 158


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341  KVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQCERA 162
            K+W L I  KLKHFLWR+++ +LPT   L  RG+++DP C  C  E E+  H  F C  A
Sbjct: 666  KIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFA 725

Query: 161  QLIWKLSPIQWF-DTLRPNFTMKKWWYALCEIKESAINTARIQLSVYLLWWLWK 3
             + W+LS    +  ++  N         L  ++ + I  ++  +  +LLW +WK
Sbjct: 726  TMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWK 779


>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 44/129 (34%), Positives = 65/129 (50%)
 Frame = -3

Query: 389 PETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCG 210
           PE     GK    I  K+WKL    K+KHFLW++++ +L T   L +R ++  P C  C 
Sbjct: 3   PEIQPPPGKA--EIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCC 60

Query: 209 IEQETTQHVFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLS 30
            E ET+QH+FF C  AQ +W+ S I   +      TM+     L     +        L+
Sbjct: 61  QEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLA 120

Query: 29  VYLLWWLWK 3
           +++LW LWK
Sbjct: 121 IWILWRLWK 129


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
 Frame = -3

Query: 431  YNQLIQERLWRKDAPETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALI 252
            Y++L+++R   K  P TS G      ++W K+WK  I  K+K F W+ I + L   T + 
Sbjct: 1029 YHELLEDR---KTGPSTSRGPNL---KLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMR 1082

Query: 251  QRGVKMDPICTLCGIEQETTQHVFFQCERAQLIWKLSPIQ-------------WFDTLRP 111
            +RG+ +D  C  CG ++ETT+H+ + C+ +   W +SP++             W ++L  
Sbjct: 1083 KRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLLD 1142

Query: 110  NFTMKKWW 87
                 +WW
Sbjct: 1143 THKDTEWW 1150


>ref|XP_006296178.1| hypothetical protein CARUB_v10025338mg [Capsella rubella]
           gi|482564886|gb|EOA29076.1| hypothetical protein
           CARUB_v10025338mg [Capsella rubella]
          Length = 417

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 37/121 (30%), Positives = 64/121 (52%)
 Frame = -3

Query: 365 KQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQH 186
           K+I  +  KVW L+   K+K F WRV++ ++  +  L + G+  +P+C  C +E+ET  H
Sbjct: 82  KRINAVKEKVWGLHTAPKIKLFFWRVLSGAVAVSECLHRHGINSNPLCQACKVEEETISH 141

Query: 185 VFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLSVYLLWWLW 6
           V F C+ AQ +W +S +   D      T++   +    + +S +     Q   +LLW +W
Sbjct: 142 VLFGCQLAQQVWSVSGLPVPDNGFFPTTVENMEFCFMVMSQSEVPLQSRQAIPWLLWEIW 201

Query: 5   K 3
           K
Sbjct: 202 K 202


>ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Capsella rubella]
           gi|482548097|gb|EOA12297.1| hypothetical protein
           CARUB_v10007977mg [Capsella rubella]
          Length = 417

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 36/121 (29%), Positives = 65/121 (53%)
 Frame = -3

Query: 365 KQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQH 186
           K+I  +  KVW  +   K+K F WRV++ ++  +  L + G+  +P+C +C +E+ET  H
Sbjct: 82  KRINAVKEKVWAFHTAPKIKMFFWRVLSGAIAVSECLRRHGINTNPLCQVCKVEEETISH 141

Query: 185 VFFQCERAQLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLSVYLLWWLW 6
           V F C+ AQ +W +S +        + T++   Y    + +S ++    Q   +LLW +W
Sbjct: 142 VLFGCQLAQQVWSVSGLPIPANGFSSSTVENVEYCFMIMGKSEVSLQSRQAIPWLLWEIW 201

Query: 5   K 3
           K
Sbjct: 202 K 202


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1138

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341  KVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQCERA 162
            +VW      K+K FLWR+++ +LP A  +I+RG+ +DP C +CG E E+T HV F C  A
Sbjct: 821  QVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMA 880

Query: 161  QLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLS-VYLLWWLWK 3
            + +W LS +   +    N ++      L E+K+  +    ++ S  ++LW LWK
Sbjct: 881  RQVWALSGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWRLWK 934


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341  KVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQCERA 162
            K+W      K+K FLWR+++ +LP A  +I+RG+ +DP C +CG E E+  HV F C  A
Sbjct: 1047 KIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLA 1106

Query: 161  QLIWKLSPIQWFDTLRPNFTMKKWWYALCEIKESAINTARIQLS-VYLLWWLWK 3
            + +W LS +        N ++      L E+K   +   +I+ S  ++LW LWK
Sbjct: 1107 RQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWK 1160


>gb|ABA98898.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1188

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 31/84 (36%), Positives = 49/84 (58%)
 Frame = -3

Query: 395  DAPETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTL 216
            +A E+S+  G   +++WN VWK NI  K+K F WR I++ LPT     +R  ++  +C+ 
Sbjct: 839  NAGESSSSSGNDTKKVWNHVWKCNIPQKVKVFSWRAISNCLPTMVNKKKRNPELSDVCSF 898

Query: 215  CGIEQETTQHVFFQCERAQLIWKL 144
            CG+E E   H  ++C  A+  W L
Sbjct: 899  CGLEPEDVAHALWRCPHARRYWDL 922


>gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indica Group]
          Length = 556

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/80 (41%), Positives = 46/80 (57%)
 Frame = -3

Query: 386 ETSNGGGKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGI 207
           E S+  G    R WN +WK N   K+K F WR IT+SLPT     +R +++  ICT+CG+
Sbjct: 435 EGSSSSGNGNSRAWNALWKCNAPQKVKIFAWRAITNSLPTLENKKKRKLEVSDICTICGV 494

Query: 206 EQETTQHVFFQCERAQLIWK 147
           E E   H  F+C  A+  W+
Sbjct: 495 ESEYVVHALFRCPHARQFWE 514


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341  KVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQCERA 162
            ++W L I  KLKHFLWR ++ +L T   L  RG+++DPIC  C  E E+  H  F C  A
Sbjct: 1201 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFA 1260

Query: 161  QLIWKLSPIQWF-DTLRPNFTMKKWWYALCEIKESAINTARIQLSVYLLWWLWK 3
             + W LS      + L  N   +     L  ++++ ++     L V+L+W +WK
Sbjct: 1261 TMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWK 1314


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341 KVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQHVFFQCERA 162
           ++W L I  KLKHFLWR ++ +L T   L  RG+++DP C  C  E E+  H  F C  A
Sbjct: 161 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 220

Query: 161 QLIWKLSPIQWF-DTLRPNFTMKKWWYALCEIKESAINTARIQLSVYLLWWLWK 3
            + W+LS      + L  N   +     L  ++++ ++     L V+L+W +WK
Sbjct: 221 TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWK 274


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
 Frame = -3

Query: 368  GKQIERIWNKVWKLNIKSKLKHFLWRVITHSLPTATALIQRGVKMDPICTLCGIEQETTQ 189
            G  +  +  +VWK+    K KHF W+ ++  L T   L  R +  + +C  CG E+E+  
Sbjct: 916  GPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESIN 975

Query: 188  HVFFQCERAQLIWKLSPIQWFDTLRP-NFTMKKWWYALCEIKESAINTARIQLSVYLLWW 12
            H+ F C  ++ IW LSPI   + + P N     + + L   KE  I    +++  ++LW+
Sbjct: 976  HLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWY 1035

Query: 11   LWK 3
            +WK
Sbjct: 1036 IWK 1038


Top