BLASTX nr result
ID: Rehmannia22_contig00032308
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00032308
(846 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 200 2e-56
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 197 4e-56
ref|XP_002443080.1| hypothetical protein SORBIDRAFT_08g007680 [S... 188 4e-56
ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314... 195 2e-55
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A... 201 3e-55
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 196 4e-55
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 194 9e-55
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 193 1e-53
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 189 2e-53
ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein A... 191 2e-53
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript... 189 2e-53
gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indi... 188 4e-53
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 184 8e-53
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 184 8e-53
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 182 1e-52
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 174 2e-52
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 180 4e-52
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 186 5e-52
gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus pe... 188 1e-51
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 183 1e-51
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 200 bits (509), Expect(2) = 2e-56
Identities = 98/198 (49%), Positives = 134/198 (67%)
Frame = +2
Query: 107 TF*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSC 286
+F S + +N + ITLIPK + + +RPI+LC V YKIISK+L+ R++P L
Sbjct: 299 SFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEI 358
Query: 287 ICENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFV 466
I ENQSAF+ R DNV+I HEA+HYL + +CFMA+K +M+KA+DR+EWD IK V
Sbjct: 359 ISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLV 418
Query: 467 MLRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFS 646
M MGF ++ WIL C+++ SYSF +NG A G V P RG+RQGDP+SP+LF+I SE+ S
Sbjct: 419 MQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLS 478
Query: 647 SLIKSAVSKKVLHGLQIS 700
L + A L GL++S
Sbjct: 479 GLCRKAQLDGSLLGLRVS 496
Score = 46.2 bits (108), Expect(2) = 2e-56
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 699 VTKG-PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
V+KG P V HLLFADD++ FC + + L IL Y SGQ++N K
Sbjct: 495 VSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSK 544
>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 197 bits (500), Expect(2) = 4e-56
Identities = 98/186 (52%), Positives = 132/186 (70%)
Frame = +2
Query: 143 NHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFLTNR 322
NHSLI LIPK NP ++++RPISLCNV+YK++SK+LANR+K L I ENQSAF++ R
Sbjct: 773 NHSLIALIPKVQNPKKVTEYRPISLCNVVYKLVSKVLANRLKSVLPEVIAENQSAFMSQR 832
Query: 323 QILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHIFVH 502
I DN++ A E IH L R ++ +A+KLDM KA+DRVEW ++ +M MGF FV
Sbjct: 833 IIHDNIIAAFEIIHCLKRRGKDSRQKIALKLDMTKAYDRVEWGFLQRMMEVMGFPDRFVF 892
Query: 503 WILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSKKVL 682
I+ CV S +YS + G G + PSRG+RQGDPISPYLFLIV+E S+LI+ A ++ +
Sbjct: 893 LIMDCVKSVTYSVLLQGAPFGKIKPSRGLRQGDPISPYLFLIVAEGLSALIRKAEREQQI 952
Query: 683 HGLQIS 700
HG+ I+
Sbjct: 953 HGVAIA 958
Score = 48.9 bits (115), Expect(2) = 4e-56
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P V+HL +ADDSLLFC+A+ AL I Y SGQ +N DK
Sbjct: 962 PSVSHLFYADDSLLFCDATVTDCMALKNIFSTYEAASGQKINKDK 1006
>ref|XP_002443080.1| hypothetical protein SORBIDRAFT_08g007680 [Sorghum bicolor]
gi|241943773|gb|EES16918.1| hypothetical protein
SORBIDRAFT_08g007680 [Sorghum bicolor]
Length = 649
Score = 188 bits (477), Expect(2) = 4e-56
Identities = 96/187 (51%), Positives = 129/187 (68%)
Frame = +2
Query: 137 NVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFLT 316
++NH+ I LIPK NP +++FRPISLCNV+YKI SK+LA R++ L I E QSAF+
Sbjct: 44 DINHTTIVLIPKTRNPQGMTEFRPISLCNVLYKICSKVLALRLREFLDEIISEEQSAFVP 103
Query: 317 NRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHIF 496
R I DNV+I++E IHYL R R G AIKLDMAKA+D VEW+ ++ +ML++GF F
Sbjct: 104 GRLITDNVLISYECIHYLKR-RKGKNGACAIKLDMAKAYDPVEWEYLQGIMLKLGFHEAF 162
Query: 497 VHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSKK 676
V I+ CV++ S+S +NG P+RGIRQGDPISPYLFL+ SE S L+KS
Sbjct: 163 VRMIMKCVTTVSFSIRVNGVPTQSFRPTRGIRQGDPISPYLFLLCSEGLSCLLKSIGPMH 222
Query: 677 VLHGLQI 697
+ G+++
Sbjct: 223 LARGVRV 229
Score = 57.8 bits (138), Expect(2) = 4e-56
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P ++HLLFADDS++F EAS + A L+EILD Y+R SGQLVN +K
Sbjct: 234 PWISHLLFADDSIVFSEASQRGAERLMEILDIYNRGSGQLVNREK 278
>ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314838 [Fragaria vesca
subsp. vesca]
Length = 1524
Score = 195 bits (495), Expect(2) = 2e-55
Identities = 91/196 (46%), Positives = 134/196 (68%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F S+E+ +NH+ +TLIPK P + Q RPISLCNVIYK+ SK+LANRIKP L I
Sbjct: 964 FLNSEELIREINHTWVTLIPKVKTPEYVHQLRPISLCNVIYKLGSKVLANRIKPLLDDII 1023
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
++Q F+ R I DN ++A E H L R + G + A+K+DM+KA+DRVEW ++ V+
Sbjct: 1024 SQHQGTFVPGRLISDNSLLAFEISHCLKRRKRGKVGYCALKIDMSKAYDRVEWSFLETVL 1083
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
++GF + W+++CV + SYSF +NG+ VIP+RG+RQGD ISPYLFL+ +E+ S
Sbjct: 1084 SKLGFGGNLLRWVMNCVRTVSYSFLVNGEPSREVIPTRGLRQGDAISPYLFLVCAEVLSR 1143
Query: 650 LIKSAVSKKVLHGLQI 697
+I A ++ +HG+++
Sbjct: 1144 IINEAEARDQIHGIRV 1159
Score = 48.1 bits (113), Expect(2) = 2e-55
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 693 RSVTKGPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
R T P+V HL FADDS +F +A + ++ +I Y R SGQ +N DK
Sbjct: 1158 RVCTGAPVVNHLFFADDSFIFLKAEVEDVLSMKQIFVAYERMSGQQINYDK 1208
>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 1152
Score = 201 bits (511), Expect(2) = 3e-55
Identities = 98/196 (50%), Positives = 137/196 (69%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F SKE+ +N + +TLIPK +P ++Q RPISLCNVIYK+ SK+LANRIKP L I
Sbjct: 232 FLNSKELLREINCTWVTLIPKVKSPEYVTQLRPISLCNVIYKLGSKVLANRIKPLLDDII 291
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
+ QSAF+ R I DN ++A E H L RSG A+KLDM+KA+DRVEW ++ V+
Sbjct: 292 SQQQSAFVPGRLISDNSLLAFEVSHCLKCRRSGKVGLCALKLDMSKAYDRVEWCFLEKVL 351
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
++GF FV WI+ C+++ SYSF +NG+ CG +IP+RG+RQGD ISPYLFL+ +E+ S
Sbjct: 352 GKLGFGDTFVRWIMHCITTVSYSFLVNGEPCGKLIPTRGLRQGDAISPYLFLLCAEVLSR 411
Query: 650 LIKSAVSKKVLHGLQI 697
+IK A + + G+++
Sbjct: 412 MIKQAETNGEIQGVKV 427
Score = 41.6 bits (96), Expect(2) = 3e-55
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 702 TKGPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
T P ++HL FADDS +F A + + +I Y SGQ +N +K
Sbjct: 429 TDAPSISHLYFADDSFIFSRAEERDMLCMKDIFVTYETMSGQQINYEK 476
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 196 bits (497), Expect(2) = 4e-55
Identities = 92/197 (46%), Positives = 137/197 (69%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F ES + +N + I LIPK ++P +S +RPISLC YKIISKIL R+K CL I
Sbjct: 836 FFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVI 895
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
++Q+AF+ + I DNV++AHE +H L R ++A+K D++KA+DRVEW+ ++ VM
Sbjct: 896 SDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVM 955
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
+++GF+ +V WI++CV+S SY ING G + PSRGIRQGDP+SPYLFL +E+ S+
Sbjct: 956 IQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSN 1015
Query: 650 LIKSAVSKKVLHGLQIS 700
+++ A K +HG++I+
Sbjct: 1016 MLRKAEVNKQIHGMKIT 1032
Score = 46.6 bits (109), Expect(2) = 4e-55
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +3
Query: 717 VTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
++HLLFADDSL FC AS+Q L I Y SGQ +N K
Sbjct: 1038 ISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAK 1080
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 194 bits (494), Expect(2) = 9e-55
Identities = 94/197 (47%), Positives = 132/197 (67%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F SK +N + I LIPK L P ++ +RPI+LCN+ YKI++KI+ R++ L I
Sbjct: 369 FFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLI 428
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
ENQSAF+ R I DNV+I HE +H+L + C MA+K DM+KA+DRVEWD +K V+
Sbjct: 429 SENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVL 488
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
R GF I++ W+L CV+S SYSF ING G V+P+RG+RQGDP+SP LF++ +E+ S
Sbjct: 489 QRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSG 548
Query: 650 LIKSAVSKKVLHGLQIS 700
L A + L G+++S
Sbjct: 549 LCTRAQRLRQLPGVRVS 565
Score = 46.6 bits (109), Expect(2) = 9e-55
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +3
Query: 708 GPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
GP V HLLFADD++ F ++ + + L EIL Y + SGQ +N K
Sbjct: 568 GPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHK 613
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 193 bits (490), Expect(2) = 1e-53
Identities = 89/191 (46%), Positives = 135/191 (70%)
Frame = +2
Query: 128 VSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSA 307
+S +N + +TLIPK P +S +RPI+LCNV YKI++KIL R++P L+ I +QSA
Sbjct: 421 LSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSA 480
Query: 308 FLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFS 487
F+ R I DNV+I HE +H+L + C MAIK DM+KA+DR++W+ ++ V++R+GF
Sbjct: 481 FVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFH 540
Query: 488 HIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAV 667
++ W++ CV + SYSF ING G V+PSRG+RQGDP+SPYLF++ +E+ S L + A
Sbjct: 541 DKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQ 600
Query: 668 SKKVLHGLQIS 700
K V+ G++++
Sbjct: 601 EKGVMVGIRVA 611
Score = 44.7 bits (104), Expect(2) = 1e-53
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P V HLLFADD++ FC+ + AL IL Y SGQ +N+ K
Sbjct: 615 PQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAK 659
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 189 bits (479), Expect(2) = 2e-53
Identities = 94/189 (49%), Positives = 130/189 (68%)
Frame = +2
Query: 134 ENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFL 313
E +N + I LIPK P +++FRPISLCNV YK+ISK+L++R+K L I E QSAF+
Sbjct: 429 ERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFV 488
Query: 314 TNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHI 493
R I DN++IA E H L + + K +MAIK DM+KA+DRVEW ++ +ML+MGF+
Sbjct: 489 AERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQK 548
Query: 494 FVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSK 673
+V WI+ C+SS SY +NG G++ PSRGIRQGDPISP+LF++ +E + +K A
Sbjct: 549 WVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWH 608
Query: 674 KVLHGLQIS 700
+ GLQIS
Sbjct: 609 GRIQGLQIS 617
Score = 48.1 bits (113), Expect(2) = 2e-53
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P +HLLFADDSL FC+A Q +++IL Y SGQ +N DK
Sbjct: 621 PSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDK 665
>ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Citrus sinensis]
Length = 968
Score = 191 bits (486), Expect(2) = 2e-53
Identities = 87/187 (46%), Positives = 135/187 (72%)
Frame = +2
Query: 140 VNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFLTN 319
+NH+ I LIPK P + ++RPISLCNVIY+II+K +ANR+K L S I QSAF+ N
Sbjct: 99 LNHTFICLIPKIAMPKAVMEYRPISLCNVIYRIIAKTIANRLKLILDSVISPTQSAFVPN 158
Query: 320 RQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHIFV 499
R I DN+++ +E +H + ++ +A+KLD +KA+DRVEW+ ++ ++R+GFSH +V
Sbjct: 159 RLITDNIIVGYECLHKIRHSKNKKHGLVALKLDNSKAYDRVEWEFLRCTLVRLGFSHKWV 218
Query: 500 HWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSKKV 679
++ C+S++S+S ING A G + P RG+RQG P+SPYLF+I +E+F++L+ A S ++
Sbjct: 219 ELVMRCISTTSFSVLINGVAKGLIQPQRGLRQGCPLSPYLFIICAEVFTNLLHQAESNQL 278
Query: 680 LHGLQIS 700
+HGL+ S
Sbjct: 279 IHGLKFS 285
Score = 45.4 bits (106), Expect(2) = 2e-53
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 717 VTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
+THLLFADDSL+F A+ + + L ++ D Y SGQ+ N +K
Sbjct: 290 ITHLLFADDSLVFTRATKEDCTNLKQLFDCYAAASGQIFNFEK 332
>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 400
Score = 189 bits (479), Expect(2) = 2e-53
Identities = 94/189 (49%), Positives = 130/189 (68%)
Frame = +2
Query: 134 ENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFL 313
E +N + I LIPK P +++FRPISLCNV YK+ISK+L++R+K L I E QSAF+
Sbjct: 63 ERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFV 122
Query: 314 TNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHI 493
R I DN++IA E H L + + K +MAIK DM+KA+DRVEW ++ +ML+MGF+
Sbjct: 123 AERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQK 182
Query: 494 FVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSK 673
+V WI+ C+SS SY +NG G++ PSRGIRQGDPISP+LF++ +E + +K A
Sbjct: 183 WVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWH 242
Query: 674 KVLHGLQIS 700
+ GLQIS
Sbjct: 243 GRIQGLQIS 251
Score = 48.1 bits (113), Expect(2) = 2e-53
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P +HLLFADDSL FC+A Q +++IL Y SGQ +N DK
Sbjct: 255 PSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDK 299
>gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indica Group]
gi|222630794|gb|EEE62926.1| hypothetical protein
OsJ_17731 [Oryza sativa Japonica Group]
Length = 893
Score = 188 bits (477), Expect(2) = 4e-53
Identities = 93/204 (45%), Positives = 137/204 (67%)
Frame = +2
Query: 86 HPSKNHWTF*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRI 265
HP K ++ E N +++TLIPK +P + RPISLC V+YK+ SK+L+NR+
Sbjct: 146 HPQKL-----SNEHYGEGWNDTVVTLIPKVQSPERLKDLRPISLCTVVYKLASKVLSNRL 200
Query: 266 KPCLTSCICENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVE 445
K L I NQSAF+ R I DNV++A+E H++ R+G + + A+KLDM+KA+DRVE
Sbjct: 201 KLILPDIISPNQSAFVPQRLITDNVLLAYEMTHFMQTKRTGREGYAALKLDMSKAYDRVE 260
Query: 446 WDCIKFVMLRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFL 625
W ++ +M+R+GF+ +V I+ CVS+ +Y +NG +IPSRG+RQGDPISPYLFL
Sbjct: 261 WSFLEKMMVRLGFAEGWVKLIMRCVSTVTYRIKVNGDLTDQIIPSRGLRQGDPISPYLFL 320
Query: 626 IVSELFSSLIKSAVSKKVLHGLQI 697
I +E FSSL+ +A + L G+++
Sbjct: 321 ICAEGFSSLLYAAEERGDLSGVKV 344
Score = 47.8 bits (112), Expect(2) = 4e-53
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +3
Query: 705 KGPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
+ P V+HLLFADDSLL + + + A L +L+ Y SGQ+VN DK
Sbjct: 347 QAPSVSHLLFADDSLLLFKVNERSAQCLQNVLNLYESCSGQIVNKDK 393
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 184 bits (466), Expect(2) = 8e-53
Identities = 84/198 (42%), Positives = 136/198 (68%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F + + +++NH+ I +IPK NP +S +RPI+LCNV+YKIISK L R+K L + +
Sbjct: 856 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 915
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
++Q+AF+ R + DNV+IAHE +H L + ++ +MA+K D++KA+DRVEW+ ++ M
Sbjct: 916 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTM 975
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
GFS ++ WI+ V S +YS +NG G + P RGIRQGDP+SPYLF++ +++ +
Sbjct: 976 RLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNH 1035
Query: 650 LIKSAVSKKVLHGLQISH 703
LIK+ V++ + G++I +
Sbjct: 1036 LIKNRVAEGDIRGIRIGN 1053
Score = 50.8 bits (120), Expect(2) = 8e-53
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P VTHL FADDSL FC+++ + AL ++ D Y +SGQ +N+ K
Sbjct: 1056 PGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1100
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 184 bits (466), Expect(2) = 8e-53
Identities = 84/198 (42%), Positives = 136/198 (68%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F + + +++NH+ I +IPK NP +S +RPI+LCNV+YKIISK L R+K L + +
Sbjct: 836 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 895
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
++Q+AF+ R + DNV+IAHE +H L + ++ +MA+K D++KA+DRVEW+ ++ M
Sbjct: 896 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTM 955
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
GFS ++ WI+ V S +YS +NG G + P RGIRQGDP+SPYLF++ +++ +
Sbjct: 956 RLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNH 1015
Query: 650 LIKSAVSKKVLHGLQISH 703
LIK+ V++ + G++I +
Sbjct: 1016 LIKNRVAEGDIRGIRIGN 1033
Score = 50.8 bits (120), Expect(2) = 8e-53
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P VTHL FADDSL FC+++ + AL ++ D Y +SGQ +N+ K
Sbjct: 1036 PGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1080
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 182 bits (461), Expect(2) = 1e-52
Identities = 90/200 (45%), Positives = 134/200 (67%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F E+ + ++ NH+ I LIPK +P +S RPISLC+V+YKIISKIL R+K L + +
Sbjct: 473 FFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIV 532
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
QSAF+ R I DN+++AHE IH L + +K MA K DM+KA+DRVEW ++ +M
Sbjct: 533 STTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMM 592
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
+GF++ ++ WI++CV+S SYS ING+ G++IP+RGIRQGDP+SP LF++ +E
Sbjct: 593 TALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIH 652
Query: 650 LIKSAVSKKVLHGLQISHKR 709
++ A + G+Q K+
Sbjct: 653 ILNKAEQAGKITGIQFQDKK 672
Score = 52.0 bits (123), Expect(2) = 1e-52
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +3
Query: 717 VTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
V HLLFADD+LL C+A+ Q+ L++ L Y + SGQ++N++K
Sbjct: 675 VNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNK 717
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 174 bits (441), Expect(2) = 2e-52
Identities = 84/189 (44%), Positives = 129/189 (68%)
Frame = +2
Query: 134 ENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFL 313
+ +N + I LIPK P+ +++ RPISLCNV YK+ISKIL R+K L + I E QSAF+
Sbjct: 266 KRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFV 325
Query: 314 TNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHI 493
R I DN++IA E H L + S FMAIK DM+KA+D+VEW+ I+ ++ +MGF
Sbjct: 326 DGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEK 385
Query: 494 FVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSK 673
++ WI+ C+++ Y ING+ G +IP RG+RQGDP+SPYLF++ +E+ + I+ A +
Sbjct: 386 WISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQ 445
Query: 674 KVLHGLQIS 700
++ G++++
Sbjct: 446 NLITGIKVA 454
Score = 58.9 bits (141), Expect(2) = 2e-52
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +3
Query: 684 TASRSVTKGPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
T + T P V+HLLFADDSL FC+A+ +Q +LEIL Y SGQ +N K
Sbjct: 449 TGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSK 502
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 180 bits (457), Expect(2) = 4e-52
Identities = 83/189 (43%), Positives = 129/189 (68%)
Frame = +2
Query: 134 ENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFL 313
E+ NH+ + LIPK P+ ++ RPISLC+V+YKIISKIL+ R+K L + QSAF+
Sbjct: 211 EDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFV 270
Query: 314 TNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHI 493
R + DN+++AHE +H L + +K FM K DM+KA+DRVEW +K ++L +GF+
Sbjct: 271 AERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNST 330
Query: 494 FVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSK 673
+++W+++CVSS SYS ING+ G++ P RG+RQGDP+SP+LF++ +E ++ A
Sbjct: 331 WINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKI 390
Query: 674 KVLHGLQIS 700
+ G+Q +
Sbjct: 391 GKISGIQFN 399
Score = 52.0 bits (123), Expect(2) = 4e-52
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +3
Query: 708 GPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
GP V HLLFADD+LL C+AS + + ++ L Y SGQ++N +K
Sbjct: 402 GPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEK 447
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 186 bits (472), Expect(2) = 5e-52
Identities = 87/189 (46%), Positives = 135/189 (71%)
Frame = +2
Query: 140 VNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCICENQSAFLTN 319
VN + I LIPK + FRPISLCNV+YKI++K+LANR+K L I E+QS F+
Sbjct: 493 VNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLANRMKMVLPMVIHESQSGFVPG 552
Query: 320 RQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVMLRMGFSHIFV 499
R I DNV++A+E H+L + ++G K ++ +KLDM+KA+DRVEW ++ +ML++GF +
Sbjct: 553 RLITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYDRVEWCFLENMMLKLGFPTRYT 612
Query: 500 HWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSSLIKSAVSKKV 679
+++CV+S+ +S +NG+ PSRG+RQGDP+SP+LF++ +E S+L++ A KKV
Sbjct: 613 KLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDPLSPFLFVVCAEGLSTLLRDAEEKKV 672
Query: 680 LHGLQISHK 706
+HG++I H+
Sbjct: 673 IHGVKIGHR 681
Score = 45.8 bits (107), Expect(2) = 5e-52
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +3
Query: 717 VTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
++HL FADDSLLF A+ ++ +++IL Y SGQ +N++K
Sbjct: 685 ISHLFFADDSLLFIRATEEEVENVMDILSTYEAASGQKLNMEK 727
>gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus persica]
Length = 1496
Score = 188 bits (477), Expect(2) = 1e-51
Identities = 88/196 (44%), Positives = 135/196 (68%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F ++ ++ + +N + + LIPK P + Q RPISLCNV+YKI +K+L R+K L + I
Sbjct: 837 FFKTGKLLKRINFTHVALIPKVHEPKNMMQLRPISLCNVLYKIGAKVLTTRLKAILPTLI 896
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
+ QSAF+ R I DN ++A E +H +++ G + ++A+K+DM+KA+DRVEW ++ +M
Sbjct: 897 SDTQSAFVPGRAISDNSIVAFELLHMMHKKNQGRQGYLALKIDMSKAYDRVEWSFLEALM 956
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
MGF+ ++ I+ CV++ SYSF +NG GYVIP RG+RQGDP+SPYLFL+ +E SS
Sbjct: 957 KGMGFAPRWIQLIMECVTTVSYSFMLNGNPVGYVIPQRGLRQGDPLSPYLFLLCAEALSS 1016
Query: 650 LIKSAVSKKVLHGLQI 697
LI A + +LHG+ +
Sbjct: 1017 LILQAERRNLLHGVNL 1032
Score = 42.7 bits (99), Expect(2) = 1e-51
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +3
Query: 711 PIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
P V+HL FADDS LF A Q L I Y SGQ ++++K
Sbjct: 1037 PSVSHLFFADDSFLFLRADQQDCEQLSIIFQKYEMVSGQKIHLEK 1081
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 183 bits (464), Expect(2) = 1e-51
Identities = 88/197 (44%), Positives = 134/197 (68%)
Frame = +2
Query: 110 F*ESKEVSENVNHSLITLIPKCLNPSLISQFRPISLCNVIYKIISKILANRIKPCLTSCI 289
F E+ + + NH+ + LIPK NP +S RPISLC+V+YKIISKIL+ ++K L S +
Sbjct: 426 FFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIV 485
Query: 290 CENQSAFLTNRQILDNVVIAHEAIHYLNRHRSGTKCFMAIKLDMAKAFDRVEWDCIKFVM 469
+QSAF R I DN++IAHE +H L + +K FM K DM+KA+DRVEW ++ ++
Sbjct: 486 SPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEIL 545
Query: 470 LRMGFSHIFVHWILSCVSSSSYSFNINGKACGYVIPSRGIRQGDPISPYLFLIVSELFSS 649
+ +GF+ ++ WI+ CV+S +YS ING+ G++ P RGIRQGDPISP+LF++ +E
Sbjct: 546 VALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIH 605
Query: 650 LIKSAVSKKVLHGLQIS 700
+++ A + K + G+Q +
Sbjct: 606 ILQQAENSKKVSGIQFN 622
Score = 47.4 bits (111), Expect(2) = 1e-51
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 708 GPIVTHLLFADDSLLFCEASSQQASALLEILDNYHRFSGQLVNIDK 845
GP V HLLF DD+ L C A+ ++ L Y SGQL+N++K
Sbjct: 625 GPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEK 670