BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00032096
         (1285 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]   278   e-100
emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]   250   5e-94
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624...   261   2e-93
emb|CCH50966.1| T4.5 [Malus x robusta]                                261   4e-92
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   255   1e-91
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   254   3e-91
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   262   4e-91
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   260   8e-91
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   260   2e-90
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   263   3e-90
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   261   1e-89
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  259   2e-89
gb|AAB82754.1| retrofit [Oryza longistaminata]                        259   3e-89
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   256   1e-88
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   252   2e-88
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi...   253   2e-88
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   256   5e-88
gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Ho...   267   1e-87
gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subc...   267   1e-87
gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryz...   267   1e-87

>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
          Length = 1002

 Score =  278 bits (712), Expect(2) = e-100
 Identities = 147/287 (51%), Positives = 183/287 (63%), Gaps = 1/287 (0%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            + E +Y++QP G+   S P HVCKL KA+YGLKQAP+ W  KL+  L + GF  S SD  
Sbjct: 610  ITETVYLSQPAGFVSTSHPQHVCKLQKALYGLKQAPRVWFHKLREALHTWGFISSTSDTS 669

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LF  +   +            +TG++  LVQ +  +LQ  F+LK           E   +
Sbjct: 670  LFIYKHNGNFLLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRT 729

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFDNATLYRSTVGALQY 748
            + GL L Q KY  DLL KT + S  P  TP   + KL     P F + TLYRST+GALQY
Sbjct: 730  TTGLHLTQSKYTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQY 789

Query: 747  LTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFSD 568
            LT TR DI++ VNKLSQ+L +PT  HW ACKRVLRYLKG  H GL F+P+  LHLQ ++D
Sbjct: 790  LTYTRPDIAFAVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTPASSLHLQVYTD 849

Query: 567  ADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            ADWAS+IDD+RST+GYCVFLG NL  WSS+KQ VVARSST+AEY  L
Sbjct: 850  ADWASSIDDRRSTTGYCVFLGTNLFTWSSRKQPVVARSSTKAEYRAL 896



 Score =  116 bits (290), Expect(2) = e-100
 Identities = 56/107 (52%), Positives = 78/107 (72%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA A+ ++ W++SLF+ELG SL    V+WCDN  A +LA+NPVFH+RTKHIEVDV Y+
Sbjct: 894  RALAHASXEVAWLRSLFSELGISLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVXYV 953

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQTPPG 116
            RE+V +K++ + Y+PS EQ AD+  KPL   RFQ L +K +L    G
Sbjct: 954  REQVLDKKLVVSYVPSVEQXADLFTKPLSIPRFQYLLTKLNLXVSLG 1000


>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
          Length = 1099

 Score =  250 bits (638), Expect(2) = 5e-94
 Identities = 135/283 (47%), Positives = 172/283 (60%), Gaps = 1/283 (0%)
 Frame = -2

Query: 1272 IYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGCLFFQ 1093
            +YM Q  G+   + P H CKL+K++YGLKQAP+    +L+  L+S  FQ S+S+   F  
Sbjct: 696  VYMCQLEGFVSSTHPTHACKLIKSLYGLKQAPRXXFVQLRSALVSWRFQHSISNNSXFXS 755

Query: 1092 QQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSSSHGL 916
             +               + GDS +L+  V   L   F+LK           E    + GL
Sbjct: 756  XKNGHLVLVLAYVDDILIIGDSSALIHSVIQALTSRFALKTLGSISYFLRFEAFRDNLGL 815

Query: 915  LLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFDNATLYRSTVGALQYLTLT 736
             LNQ KYI DLL K N+    P  T   + QKL L+D+  F N TL RST+GALQYLTLT
Sbjct: 816  YLNQVKYIFDLLXKKNMVHAKPSSTLMALGQKLALEDNAHFPNVTLDRSTIGALQYLTLT 875

Query: 735  RSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFSDADWA 556
            R DIS+ VNKLSQFL  PT  HW ACKR+LRY+ GT  LGL F P+ R  L+ FSDADWA
Sbjct: 876  RLDISFSVNKLSQFLKAPTQHHWSACKRLLRYVSGTRTLGLSFXPTTRFTLEGFSDADWA 935

Query: 555  SAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
              +DD+R T+GY VFLG NL+ WSS+KQ V+ARS+TE++Y  L
Sbjct: 936  CNVDDRRXTTGYXVFLGGNLVTWSSRKQQVIARSNTESKYRAL 978



 Score =  123 bits (308), Expect(2) = 5e-94
 Identities = 56/109 (51%), Positives = 79/109 (72%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S+ ++LA+ T +LIWIKSL  EL F L  + + WC N+ A +LA NP++H+RTKHIEVDV
Sbjct: 973  SKYRALASVTMELIWIKSLLDELQFPLQHRPIAWCXNLXAHALAHNPIYHSRTKHIEVDV 1032

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQTPP 119
            H+IREK+ ++ +E+ Y+PS+EQ A++  K L   +FQ  CSK SL  PP
Sbjct: 1033 HFIREKILHRALEVCYIPSQEQQAELFTKSLSLSQFQFKCSKLSLSYPP 1081


>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
          Length = 1682

 Score =  261 bits (668), Expect(2) = 2e-93
 Identities = 138/288 (47%), Positives = 182/288 (63%), Gaps = 2/288 (0%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLL-SLGFQVSVSDG 1108
            L E +YM QP G+ D S+P HVCKL KA+YGLKQAP++W ++LK  ++   GFQ S SD 
Sbjct: 442  LVEDVYMGQPEGFIDPSRPLHVCKLKKALYGLKQAPRAWFERLKDAMVVKWGFQNSRSDN 501

Query: 1107 CLFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHS 931
             LF++  G              +TG S  +VQQV  N+Q  F+LK           EV  
Sbjct: 502  SLFYKWIGDQVIFVLVYVDDIIITGSSDKMVQQVITNMQNAFALKDLGKLSYFLGIEVTK 561

Query: 930  SSHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFDNATLYRSTVGALQ 751
            ++ G+ L+Q KYI D+L K N++ C+P  TP      L      +  N++ Y+S VGALQ
Sbjct: 562  TASGIYLSQSKYIADILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSSQYKSAVGALQ 621

Query: 750  YLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFS 571
            Y+TLTR +I++ VNKLSQFL  PT  HW +CKR+LRYLKGT H GL F     + +  FS
Sbjct: 622  YVTLTRPEIAFSVNKLSQFLASPTAEHWESCKRLLRYLKGTIHFGLHFYHYGTMQINCFS 681

Query: 570  DADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            D+DWA   DD++S +GY V+LG NL++WSSKKQ VV+RSSTEAEY  L
Sbjct: 682  DSDWACDKDDRKSVAGYAVYLGSNLVSWSSKKQAVVSRSSTEAEYRAL 729



 Score =  109 bits (273), Expect(2) = 2e-93
 Identities = 50/102 (49%), Positives = 75/102 (73%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA AT ++ WI+SL  EL   L    ++WCDN SAI+LA NPV+HA+TKH+E+D+H+I
Sbjct: 727  RALAQATAEVTWIQSLLKELHIHLVTAPIMWCDNQSAIALAHNPVYHAKTKHVELDIHFI 786

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSL 131
            R+KV  K++ ++++PSE+Q ADVL K L   +F  L SK ++
Sbjct: 787  RDKVTAKQITVQFIPSEDQNADVLTKALTFNQFHYLRSKLNV 828


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  261 bits (668), Expect(2) = 4e-92
 Identities = 145/287 (50%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            LKE +YM QP G+ D SKPHHVCKL K++YGLKQAP++W +     +LSLGF  S SD  
Sbjct: 1267 LKEDVYMVQPPGFVDPSKPHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTS 1326

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LF ++   S            +TG S +  Q + + LQ +F +K           EVH S
Sbjct: 1327 LFIKRD-TSITFILVYVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKS 1385

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFDNATLYRSTVGALQY 748
              GLLL+Q KY LDLLKKT++    PC TP  +S         L  + T YRSTVGALQY
Sbjct: 1386 DQGLLLHQAKYALDLLKKTDMLGAKPCATP--VSTSKLDHSGTLLSDPTSYRSTVGALQY 1443

Query: 747  LTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFSD 568
            LT TR D+++ VN++ Q++H P T H  A KR+LRYLKGT  LGL F+   +  L ++SD
Sbjct: 1444 LTWTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLWFTKGSQC-LTAWSD 1502

Query: 567  ADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            ADWA    D+RSTSGYCVFLG NLI+WS+KKQ  VARSSTEAEY  L
Sbjct: 1503 ADWAGCPVDRRSTSGYCVFLGSNLISWSAKKQATVARSSTEAEYRSL 1549



 Score =  105 bits (261), Expect(2) = 4e-92
 Identities = 51/118 (43%), Positives = 77/118 (65%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            +SLA    ++ W+  +  ++ F L +  V++CDN S I+LA NPVFHARTKH+E+D HYI
Sbjct: 1547 RSLANTAAEITWVCKILHDISFPLLKTPVIYCDNKSVIALAFNPVFHARTKHVEIDYHYI 1606

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQTPPGLV*GACISVIS 83
            REKV    + ++++ S  Q+AD+  KPL + RF  L SK S+++P   + G   S+IS
Sbjct: 1607 REKVLLGHIGVQHVASLLQIADIFTKPLAADRFAALTSKLSVRSPSFSLRGCVKSIIS 1664


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  255 bits (651), Expect(2) = 1e-91
 Identities = 135/287 (47%), Positives = 176/287 (61%), Gaps = 1/287 (0%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E ++MTQP G+ + + P +VCKL KA+YGLKQAP++W  KL+  LL  GFQ S +D  
Sbjct: 977  LEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTS 1036

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LF                   VTG +P LV    + L+  F+L+           +    
Sbjct: 1037 LFIFHTATDILILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLSYFLGIQAQQL 1096

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFDNATLYRSTVGALQY 748
               L LNQHKYI DLL +T + +  P  TP  + + L   D     + + YR TVGALQY
Sbjct: 1097 GSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSEYRRTVGALQY 1156

Query: 747  LTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFSD 568
            +TLTR DI++ VNK  QF+ +P+  HW A KR+LRYLKGT HLGL F P+  + LQ +SD
Sbjct: 1157 VTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMELQGYSD 1216

Query: 567  ADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            ADWAS  DD+RSTSGYCVFLG NLI+WSS KQ +V++SS E+EY  L
Sbjct: 1217 ADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGL 1263



 Score =  110 bits (274), Expect(2) = 1e-91
 Identities = 54/109 (49%), Positives = 75/109 (68%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S  + L + T +L+WI+SL  EL        +LWCDN SA  LA+NPVFH+R+KHIE+D+
Sbjct: 1258 SEYRGLVSLTAELVWIQSLLQELCLPTSPP-ILWCDNQSAAHLAANPVFHSRSKHIELDL 1316

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQTPP 119
            H+IREKV  +E++I Y+PS +QLAD+  K LP  +F  L SK ++  PP
Sbjct: 1317 HFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPP 1365


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  254 bits (648), Expect(2) = 3e-91
 Identities = 134/287 (46%), Positives = 176/287 (61%), Gaps = 1/287 (0%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E ++MTQP G+ + + P +VCKL KA+YGLKQAP++W  KL+  LL  GFQ S +D  
Sbjct: 324  LEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTS 383

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LF                   VTG +P+LV    + L+  F+L+           +    
Sbjct: 384  LFIFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGIQAQQL 443

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFDNATLYRSTVGALQY 748
               L LNQHKYI DLL +T + +  P  TP  + + L   D     + + YR TVGALQY
Sbjct: 444  GSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTVGALQY 503

Query: 747  LTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFSD 568
            +TLTR DI++ VNK  QF+ +P+  HW A KR+LRYLKGT HLGL F P+  +  Q +SD
Sbjct: 504  VTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMEXQGYSD 563

Query: 567  ADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            ADWAS  DD+RSTSGYCVFLG NLI+WSS KQ +V++SS E+EY  L
Sbjct: 564  ADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGL 610



 Score =  110 bits (274), Expect(2) = 3e-91
 Identities = 54/109 (49%), Positives = 75/109 (68%)
 Frame = -1

Query: 445 SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
           S  + L + T +L+WI+SL  EL        +LWCDN SA  LA+NPVFH+R+KHIE+D+
Sbjct: 605 SEYRGLVSLTAELVWIQSLLQELCLPTSPP-ILWCDNQSAAHLAANPVFHSRSKHIELDL 663

Query: 265 HYIREKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQTPP 119
           H+IREKV  +E++I Y+PS +QLAD+  K LP  +F  L SK ++  PP
Sbjct: 664 HFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPP 712


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  262 bits (670), Expect(2) = 4e-91
 Identities = 138/289 (47%), Positives = 178/289 (61%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP GYE  S P++VCKL KA+YGLKQAP++W  +L   L  LGF  S +D  
Sbjct: 425  LEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTS 484

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF ++G              +    P     +   L K F+LK           EVH  
Sbjct: 485  LFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKV 544

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLF--DNATLYRSTVGAL 754
              GL+L+Q KY  DLL++  +  C P  TP   S+KL + +  L    ++T YRS VGAL
Sbjct: 545  KDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGAL 604

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DIS+ +NK+ QFLH PTT+HW A KR+LRY+K T   GL F  +P L +  F
Sbjct: 605  QYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGF 664

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA + DD+RST G+ VFLGPNL++WS++KQ  V+RSSTEAEY  L
Sbjct: 665  SDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKAL 713



 Score =  101 bits (251), Expect(2) = 4e-91
 Identities = 43/103 (41%), Positives = 72/103 (69%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA AT +++W+++L  ELG    + + LWCDN+ A  L++NP+FHARTKHIEVD H++
Sbjct: 711  KALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFV 770

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQ 128
            RE+V  K +EI Y+ +++Q+AD   K +P  + +   +  +L+
Sbjct: 771  RERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNLE 813


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  260 bits (664), Expect(2) = 8e-91
 Identities = 139/289 (48%), Positives = 186/289 (64%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP GYED +K ++VCKL KA+YGLKQAP++W  +L   LLSLGFQ S +D  
Sbjct: 923  LEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTS 982

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G+             V   +    + + ++L K F+LK           EV+  
Sbjct: 983  LFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKV 1042

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKD-SPLFD-NATLYRSTVGAL 754
              G++L Q KY  DLLKK  +S C P  TP   S+KL + + SPL + + T YRS VGAL
Sbjct: 1043 RDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGAL 1102

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI++ VNK+ QFLH PTT HW A KR+LRY+K  ++LGL    S    + +F
Sbjct: 1103 QYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAF 1162

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA ++DD++ST G+ VFLG NL++WS++KQ  V+RSSTE+EY  L
Sbjct: 1163 SDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKAL 1211



 Score =  102 bits (254), Expect(2) = 8e-91
 Identities = 44/91 (48%), Positives = 66/91 (72%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S  ++LA AT +LIW++ L TE+     + + LWCDN+ A  L++NP+FHARTKHIEVD 
Sbjct: 1206 SEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDY 1265

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPL 173
            H++R++V  K ++I Y+P+ +Q+AD   KPL
Sbjct: 1266 HFVRDRVAKKLLDIEYVPTGDQVADGFTKPL 1296


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  260 bits (664), Expect(2) = 2e-90
 Identities = 138/289 (47%), Positives = 177/289 (61%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP GYE  S P++VCKL KA+YGLKQAP++W  +L   L  LGF  S +D  
Sbjct: 1003 LEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTS 1062

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF ++G              V    P     +   L K F+LK           EVH  
Sbjct: 1063 LFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKV 1122

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLF--DNATLYRSTVGAL 754
              GL+L+Q KY  DLL++  +  C P  TP   S+KL + +  L    ++T YRS VGAL
Sbjct: 1123 KDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGAL 1182

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DIS+ +NK+ QFLH PTT+HW A KR+LRY+K T   GL F  +P L +  F
Sbjct: 1183 QYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGF 1242

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA + DD+RST G+ VFLGPNL++WS++KQ  V+RSS EAEY  L
Sbjct: 1243 SDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKAL 1291



 Score =  101 bits (251), Expect(2) = 2e-90
 Identities = 43/103 (41%), Positives = 72/103 (69%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA AT +++W+++L  ELG    + + LWCDN+ A  L++NP+FHARTKHIEVD H++
Sbjct: 1289 KALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFV 1348

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQ 128
            RE+V  K +EI Y+ +++Q+AD   K +P  + +   +  +L+
Sbjct: 1349 RERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNLE 1391


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  263 bits (673), Expect(2) = 3e-90
 Identities = 138/289 (47%), Positives = 184/289 (63%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP G+E+  +P+++CKL KA+YGLKQAP++W  +L   L  LGF  S +D  
Sbjct: 544  LEEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTS 603

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              V   S  +V  +  +L+K F+LK           EV   
Sbjct: 604  LFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKV 663

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLF--DNATLYRSTVGAL 754
            S GL+L+Q  Y  D+LK+  +S C P  TP   ++KL ++D      ++A+ YRS VGAL
Sbjct: 664  SQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGAL 723

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTRSD+S++VNK+ QFLH PTT HW A KR+LRY+KGT   GL F  S  + + +F
Sbjct: 724  QYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAF 783

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA   DD+RST G+ VFLGPNLI+WS++KQ  V+RSSTEAEY  L
Sbjct: 784  SDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKAL 832



 Score = 97.1 bits (240), Expect(2) = 3e-90
 Identities = 41/90 (45%), Positives = 65/90 (72%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA ATT++ W++ +  EL  +    + LWCDN+ A  L++NPVFHARTKHIE+D H++
Sbjct: 830  KALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFV 889

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPLPS 167
            RE+V  K ++I+++ + +QLAD   K LP+
Sbjct: 890  REQVAKKLLDIQFISTTDQLADGFTKSLPA 919


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  261 bits (668), Expect(2) = 1e-89
 Identities = 142/289 (49%), Positives = 183/289 (63%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP GYED S P +VCKL KA+YGLKQAP++W  +L   L  +GFQ S +D  
Sbjct: 857  LEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTS 916

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              VT      V  +  +LQK F+LK           EV   
Sbjct: 917  LFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKV 976

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDS-PLFDN-ATLYRSTVGAL 754
            S G++L Q KY+ DLL++ N+  C P  TP   S+KL + +  PL  N AT YRS VGAL
Sbjct: 977  SGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGAL 1036

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI++ VNK+ QFLH PTT HW A KR+LRYLK  + LGL  S S  + + ++
Sbjct: 1037 QYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSAY 1096

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA ++DD+RST G+ VFLG NL++WS++KQ  V+RSSTE+EY  L
Sbjct: 1097 SDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKAL 1145



 Score = 97.1 bits (240), Expect(2) = 1e-89
 Identities = 43/91 (47%), Positives = 64/91 (70%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S  ++LA AT +++W+++L  EL       + LWCDN+ A  L++NPVFHARTKHIEVD 
Sbjct: 1140 SEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDY 1199

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPL 173
            H++RE+V  K +EI ++P+ +Q+AD   K L
Sbjct: 1200 HFVRERVSRKLLEIDFVPTGDQVADGFTKAL 1230


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  259 bits (663), Expect(2) = 2e-89
 Identities = 138/286 (48%), Positives = 181/286 (63%), Gaps = 3/286 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP G+E  SKP++VCKL KA+YGLKQAP++W  +L   L+ LGF+ S +D  
Sbjct: 1046 LEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTS 1105

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              +   +      +  +L K F+LK           EV   
Sbjct: 1106 LFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKV 1165

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKD-SPLFDN-ATLYRSTVGAL 754
             +G++L Q KY  DLLK+ N+S+C P  TP  +S+KL L + SPL  N AT YRS VGAL
Sbjct: 1166 PNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGAL 1225

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI+Y VNK+ QFLH PTT HW A KR+LRYL   + LGL    S    +  +
Sbjct: 1226 QYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLVHGY 1285

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEY 436
            SDADWA ++DD++ST G+ VFLG NL++WS++KQ  V+RSSTEAEY
Sbjct: 1286 SDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEY 1331



 Score = 98.6 bits (244), Expect(2) = 2e-89
 Identities = 43/88 (48%), Positives = 64/88 (72%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            +++A  T +LIW+++L  ELG    + + +WCDN+ A  L++NPVFHARTKHIEVD H++
Sbjct: 1332 KAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFV 1391

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPL 173
            RE+V  K +EI ++PS +Q+AD   K L
Sbjct: 1392 RERVSQKLLEIDFVPSGDQVADGFTKAL 1419


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  259 bits (661), Expect(2) = 3e-89
 Identities = 141/286 (49%), Positives = 181/286 (63%), Gaps = 3/286 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP G+E  SKP +VCKL KA+YGLKQAP++W  +L   L+ LGF+ S +D  
Sbjct: 1055 LEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTS 1114

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              V   +      +  +L K F+LK           EV   
Sbjct: 1115 LFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKV 1174

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKD-SPLFDN-ATLYRSTVGAL 754
            S+G++L Q KY  DLLK+ N+S+C P  TP  +S+KL L + SPL  N A  YRS VGAL
Sbjct: 1175 SNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGAL 1234

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI+Y VNK+ QFLH PTTSHW A KR+LRYL   + LGL    S    +  +
Sbjct: 1235 QYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLVHGY 1294

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEY 436
            SDADWA +IDD++ST G+ VFLG NL++WS++KQ  V+RSSTEAEY
Sbjct: 1295 SDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEY 1340



 Score = 98.6 bits (244), Expect(2) = 3e-89
 Identities = 43/88 (48%), Positives = 64/88 (72%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            +++A  T +LIW+++L  ELG    + + +WCDN+ A  L++NPVFHARTKHIEVD H++
Sbjct: 1341 KAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFV 1400

Query: 256  REKVQNKEVEIRYLPSEEQLADVLIKPL 173
            RE+V  K +EI ++PS +Q+AD   K L
Sbjct: 1401 RERVSQKLLEIDFVPSGDQVADGFTKAL 1428


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  256 bits (653), Expect(2) = 1e-88
 Identities = 139/289 (48%), Positives = 178/289 (61%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP GYED   P +VCKL KA+YGLKQAP++W  KL   L  LGFQ S +D  
Sbjct: 866  LEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTS 925

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              V       V  +  +LQK F+LK           EV+ +
Sbjct: 926  LFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKA 985

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLF--DNATLYRSTVGAL 754
            S G++L Q KY+ DLL++  ++ C P  TP   S+KL L +  L   ++A+ YRS VGAL
Sbjct: 986  SSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGAL 1045

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI + VNK+ QFLH PT  HW A KR+LRYLK  + LGL  S S  + +  +
Sbjct: 1046 QYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKISKSKSMLVSGY 1105

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA  IDD+RST G+ VFLG NL++W++KKQ  V RSSTE+EY  L
Sbjct: 1106 SDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKAL 1154



 Score = 99.8 bits (247), Expect(2) = 1e-88
 Identities = 44/97 (45%), Positives = 68/97 (70%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S  ++LA AT +++WI++L  EL       + LWCDN+ A  L+SNPVFHARTKHIEVD 
Sbjct: 1149 SEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVFHARTKHIEVDY 1208

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQ 155
            H++RE++Q K +E+ ++P+ +Q+AD   K L + + +
Sbjct: 1209 HFVRERMQRKLLEVEFIPTGDQVADGFTKALSARQLE 1245


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  252 bits (644), Expect(2) = 2e-88
 Identities = 136/289 (47%), Positives = 177/289 (61%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP GYED S P +VCKL KA+YGLKQAP++W  +L   L  LGFQ S  D  
Sbjct: 1057 LEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTS 1116

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              VT      V  +  +L+K F+LK           EV+  
Sbjct: 1117 LFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKV 1176

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFD--NATLYRSTVGAL 754
            +  ++L Q KY  DLL++ N+  C P  TP   S+KL   +  L    +AT YRS VGAL
Sbjct: 1177 TDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGAL 1236

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI++ VNK+ QFLH PTT HW A KR+LRYLK  + LGL    S  + + ++
Sbjct: 1237 QYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVSAY 1296

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA ++DD+RST G+ VFLG NL++W ++KQ  V+RSSTE+EY  L
Sbjct: 1297 SDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTESEYKAL 1345



 Score =  102 bits (254), Expect(2) = 2e-88
 Identities = 46/92 (50%), Positives = 66/92 (71%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S  ++LA AT +++W+++L TEL       + LWCDN+ A  L+SNPVFHARTKHIEVD 
Sbjct: 1340 SEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIEVDY 1399

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPLP 170
            H++RE+V  K +EI ++P+ +Q+AD   K LP
Sbjct: 1400 HFVRERVSQKLLEIDFVPTGDQVADGFTKALP 1431


>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
          Length = 391

 Score =  253 bits (646), Expect(2) = 2e-88
 Identities = 135/283 (47%), Positives = 172/283 (60%), Gaps = 3/283 (1%)
 Frame = -2

Query: 1266 MTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGCLFFQQQ 1087
            M QP GYE  S P++VCKL KA+YGLKQAP++W  +L   L  LGF  S +D  LFF ++
Sbjct: 1    MKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKK 60

Query: 1086 GASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSSSHGLLL 910
            G              V    P     +   L K F+LK           EVH    GL+L
Sbjct: 61   GQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLML 120

Query: 909  NQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLF--DNATLYRSTVGALQYLTLT 736
            +Q KY  DLL++  +  C P  TP   S+KL + +  L    ++T YRS VGALQYLTLT
Sbjct: 121  SQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLT 180

Query: 735  RSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSFSDADWA 556
            R DIS+ +NK+ QFLH PTT+HW A KR+LRY+K T   GL F  +P L +  FSDADWA
Sbjct: 181  RPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWA 240

Query: 555  SAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
             + DD+RST G+ VFLGPNL++WS++KQ  V+RSS EAEY  L
Sbjct: 241  GSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKAL 283



 Score =  101 bits (251), Expect(2) = 2e-88
 Identities = 43/103 (41%), Positives = 72/103 (69%)
 Frame = -1

Query: 436 QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
           ++LA AT +++W+++L  ELG    + + LWCDN+ A  L++NP+FHARTKHIEVD H++
Sbjct: 281 KALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFV 340

Query: 256 REKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSLQ 128
           RE+V  K +EI Y+ +++Q+AD   K +P  + +   +  +L+
Sbjct: 341 RERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNLE 383


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  256 bits (654), Expect(2) = 5e-88
 Identities = 136/289 (47%), Positives = 179/289 (61%), Gaps = 3/289 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP G+ED +KPHHVCKL KA+YGLKQAP++W  +L   L+ LGF+ S  D  
Sbjct: 1063 LEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTS 1122

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL-EVHSS 928
            LFF  +G              V   S      +  +L+  F+LK           EV   
Sbjct: 1123 LFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKV 1182

Query: 927  SHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLF--DNATLYRSTVGAL 754
             +G++LNQ KY  DLLKK  +  C P  TP  +S+KL L +  L   ++A+ YRS VGAL
Sbjct: 1183 QNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGAL 1242

Query: 753  QYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQSF 574
            QYLTLTR DI++ VNK+ QFLH PTT HW A KR+LRYLK  + LGL    S    +  F
Sbjct: 1243 QYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGF 1302

Query: 573  SDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            SDADWA  +DD+RST G+ +FLG NL++W+++KQ  V+RSSTE+EY  +
Sbjct: 1303 SDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAI 1351



 Score = 97.1 bits (240), Expect(2) = 5e-88
 Identities = 43/105 (40%), Positives = 69/105 (65%)
 Frame = -1

Query: 445  SRVQSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDV 266
            S  +++A AT +++W+++L  EL     + + +WCDN+ A  L++NPVFHARTKHIEVD 
Sbjct: 1346 SEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDY 1405

Query: 265  HYIREKVQNKEVEIRYLPSEEQLADVLIKPLPSLRFQTLCSKFSL 131
            H++RE+V  K +EI ++ + +Q+AD   KPL     +   S  +L
Sbjct: 1406 HFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLLENFKSNLNL 1450


>gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
            sativa Japonica Group]
          Length = 1150

 Score =  267 bits (683), Expect(2) = 1e-87
 Identities = 142/290 (48%), Positives = 186/290 (64%), Gaps = 4/290 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP  YE+ISKPH+VCKL KA+YGLKQAP++W  +L   L  LGF  S +D  
Sbjct: 673  LEEDVYMRQPPEYEEISKPHYVCKLDKALYGLKQAPRAWYSRLSMKLQQLGFSPSKADTS 732

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL--EVHS 931
            LFF ++G+             V   S   V  +  NL+  F+LK         L  EV  
Sbjct: 733  LFFYRKGSVTIFVLVYVDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKK 792

Query: 930  SSHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFD--NATLYRSTVGA 757
             S GL+L+Q KY  D+LK+  +S+C P  TP   S+KL +++  L    +AT YRS VGA
Sbjct: 793  ISDGLVLSQDKYTHDILKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGA 852

Query: 756  LQYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQS 577
            LQYLTLTR DI++ +NK+ QFLH PT +HW A KR++RYL+GT  +GL    S  + + +
Sbjct: 853  LQYLTLTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLVNA 912

Query: 576  FSDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            FSDADWA  +DD+RSTSG+ VFLG NLI+WS +KQ  V+RSSTEAEY  L
Sbjct: 913  FSDADWAGCVDDRRSTSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKAL 962



 Score = 84.7 bits (208), Expect(2) = 1e-87
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA AT ++IW+++L  ELG      + LWCDN+ A  L++NP+FHARTKHIEV  H++
Sbjct: 960  KALANATAEVIWVQTLLKELGIQCPSMARLWCDNLGATYLSANPIFHARTKHIEVYFHFV 1019

Query: 256  REKVQNKEVEI 224
            RE+V  K +EI
Sbjct: 1020 RERVAQKLLEI 1030


>gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  267 bits (683), Expect(2) = 1e-87
 Identities = 142/290 (48%), Positives = 186/290 (64%), Gaps = 4/290 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP  YE+ISKPH+VCKL KA+YGLKQAP++W  +L   L  LGF  S +D  
Sbjct: 635  LEEDVYMRQPPEYEEISKPHYVCKLDKALYGLKQAPRAWYSRLSMKLQQLGFSPSKADTS 694

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL--EVHS 931
            LFF ++G+             V   S   V  +  NL+  F+LK         L  EV  
Sbjct: 695  LFFYRKGSVTIFVLVYVDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKK 754

Query: 930  SSHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFD--NATLYRSTVGA 757
             S GL+L+Q KY  D+LK+  +S+C P  TP   S+KL +++  L    +AT YRS VGA
Sbjct: 755  ISDGLVLSQDKYTHDILKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGA 814

Query: 756  LQYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQS 577
            LQYLTLTR DI++ +NK+ QFLH PT +HW A KR++RYL+GT  +GL    S  + + +
Sbjct: 815  LQYLTLTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLVNA 874

Query: 576  FSDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            FSDADWA  +DD+RSTSG+ VFLG NLI+WS +KQ  V+RSSTEAEY  L
Sbjct: 875  FSDADWAGCVDDRRSTSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKAL 924



 Score = 84.7 bits (208), Expect(2) = 1e-87
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA AT ++IW+++L  ELG      + LWCDN+ A  L++NP+FHARTKHIEV  H++
Sbjct: 922  KALANATAEVIWVQTLLKELGIQCPSMARLWCDNLGATYLSANPIFHARTKHIEVYFHFV 981

Query: 256  REKVQNKEVEI 224
            RE+V  K +EI
Sbjct: 982  RERVAQKLLEI 992


>gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1139

 Score =  267 bits (683), Expect(2) = 1e-87
 Identities = 142/290 (48%), Positives = 186/290 (64%), Gaps = 4/290 (1%)
 Frame = -2

Query: 1284 LKEVIYMTQPTGYEDISKPHHVCKLVKAIYGLKQAPKSWNDKLKFHLLSLGFQVSVSDGC 1105
            L+E +YM QP  YE+ISKPH+VCKL KA+YGLKQAP++W  +L   L  LGF  S +D  
Sbjct: 641  LEEDVYMRQPPEYEEISKPHYVCKLDKALYGLKQAPRAWYSRLSMKLQQLGFSPSKADTS 700

Query: 1104 LFFQQQGASXXXXXXXXXXXXVTGDSPSLVQQVFANLQKVFSLKHXXXXXXXXL--EVHS 931
            LFF ++G+             V   S   V  +  NL+  F+LK         L  EV  
Sbjct: 701  LFFYRKGSVTIFVLVYVDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKK 760

Query: 930  SSHGLLLNQHKYILDLLKKTNLSSCNPCVTPHCISQKLFLKDSPLFD--NATLYRSTVGA 757
             S GL+L+Q KY  D+LK+  +S+C P  TP   S+KL +++  L    +AT YRS VGA
Sbjct: 761  ISDGLVLSQDKYTHDILKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGA 820

Query: 756  LQYLTLTRSDISYIVNKLSQFLHEPTTSHWGACKRVLRYLKGTSHLGLMFSPSPRLHLQS 577
            LQYLTLTR DI++ +NK+ QFLH PT +HW A KR++RYL+GT  +GL    S  + + +
Sbjct: 821  LQYLTLTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLVNA 880

Query: 576  FSDADWASAIDDKRSTSGYCVFLGPNLIAWSSKKQNVVARSSTEAEYSPL 427
            FSDADWA  +DD+RSTSG+ VFLG NLI+WS +KQ  V+RSSTEAEY  L
Sbjct: 881  FSDADWAGCVDDRRSTSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKAL 930



 Score = 84.7 bits (208), Expect(2) = 1e-87
 Identities = 36/71 (50%), Positives = 52/71 (73%)
 Frame = -1

Query: 436  QSLATATTDLIWIKSLFTELGFSLDQQSVLWCDNISAISLASNPVFHARTKHIEVDVHYI 257
            ++LA AT ++IW+++L  ELG      + LWCDN+ A  L++NP+FHARTKHIEV  H++
Sbjct: 928  KALANATAEVIWVQTLLKELGIQCPSMARLWCDNLGATYLSANPIFHARTKHIEVYFHFV 987

Query: 256  REKVQNKEVEI 224
            RE+V  K +EI
Sbjct: 988  RERVAQKLLEI 998