BLASTX nr result
ID: Rehmannia22_contig00031494
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00031494
(438 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia... 72 1e-10
gb|AAF79804.1|AC020646_27 T32E20.19 [Arabidopsis thaliana] 69 6e-10
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 69 8e-10
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 67 2e-09
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 64 2e-08
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 64 2e-08
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 64 3e-08
ref|XP_006586027.1| PREDICTED: TMV resistance protein N-like [Gl... 63 4e-08
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 62 8e-08
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 62 1e-07
gb|ESW30650.1| hypothetical protein PHAVU_002G171400g [Phaseolus... 61 1e-07
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 61 1e-07
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 61 1e-07
gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus pe... 61 2e-07
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 61 2e-07
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 59 7e-07
gb|EMJ20613.1| hypothetical protein PRUPE_ppa021915mg, partial [... 59 9e-07
ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Caps... 58 1e-06
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 58 1e-06
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 58 1e-06
>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
protein [Arabidopsis thaliana]
gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 343
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/97 (36%), Positives = 53/97 (54%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
L R + P C C ++ET +HLFF C AQ +W+ S + TG + E + +
Sbjct: 45 LKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELL 104
Query: 256 SKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQKQGI 146
C NR + L+I++LWR+WKSRN +FQ++ I
Sbjct: 105 LSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSI 141
>gb|AAF79804.1|AC020646_27 T32E20.19 [Arabidopsis thaliana]
Length = 957
Score = 68.9 bits (167), Expect = 6e-10
Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQD- 260
L+ +G+ +DPIC C + E++ H+ F P A WKL+ + ++ +G +F N ++
Sbjct: 770 LVKKGMNIDPICSRCSLEEESICHVLFNYPYATTTWKLAKLSYL----SGHTFSNDVEEN 825
Query: 259 ----ISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQK-----QGIIHEAEVVK*AFHE 107
I I + N +++ L +L++RIWK+RN+++F K ++ ++EV +E
Sbjct: 826 ISVLIDSISNNNLTEQQKLLPFWLIFRIWKARNNYVFNKFRKCSSKVVSQSEV---DVNE 882
Query: 106 WLEFVNVCDSGKGFAPT 56
W+ +N+C+ A T
Sbjct: 883 WI--INMCERRGNTATT 897
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 68.6 bits (166), Expect = 8e-10
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWV-GTLETGFSFENWWQD 260
L+ RG+++DP C C + ET+ H+ F CP A IW LS W+ G + + EN
Sbjct: 1389 LLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFL 1448
Query: 259 ISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQK-----QGIIHEAEVVK*AFHEWLEF 95
I+ + E+ +L+WR+WK+RN+ +F K ++ + E +EWL+
Sbjct: 1449 INSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEA---EVNEWLQS 1505
Query: 94 VN 89
VN
Sbjct: 1506 VN 1507
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Frame = -3
Query: 427 RGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVE-WVGTLETGFSFENWWQDISK 251
RG+ +D C CG + ET EHL + C + W +SP+ G +E G SF W +
Sbjct: 1084 RGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAG-SFRIW---VES 1139
Query: 250 ICSKNRGKERVQLSIFLLWRIWKSRNDWLFQKQGIIHEAEVVK*AFHEWLEFVNVC 83
+ ++ E L + W IW RN W+F+K+ + + EVV+ A +EF C
Sbjct: 1140 LLDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQ-EVVERAVRGVMEFEEEC 1194
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 63.9 bits (154), Expect = 2e-08
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = -3
Query: 427 RGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDISKI 248
RG+ D C +C +NET+ H+ F+CP A+ +W ++ + G+ + + N + I
Sbjct: 1075 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1134
Query: 247 CSKNRGKERVQLSIFLLWRIWKSRNDWLFQKQGIIHEAEVVK--*AFHEW 104
+ +S ++LW +WK+RN LF+ +G I V K A+HEW
Sbjct: 1135 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEW 1184
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 63.9 bits (154), Expect = 2e-08
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Frame = -3
Query: 427 RGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDISKI 248
R ++ DPICQ C + ET+ H+ F CP Q +W+ + + SFE+ +++++
Sbjct: 67 RNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFED---NLNRL 123
Query: 247 CSKNRGKERVQLSIFL----LWRIWKSRNDWLFQKQ 152
++ + L FL +WR+WKSRN +LFQ++
Sbjct: 124 IQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQK 159
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 63.5 bits (153), Expect = 3e-08
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Frame = -3
Query: 427 RGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDISKI 248
RG+ C C + ET+ HL FQCP A+ +W LS ++ TGF + + +I+ +
Sbjct: 1028 RGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQ---APATGFG-TSIFSNINHV 1083
Query: 247 C--SKNRGKERVQ--LSIFLLWRIWKSRNDWLFQKQGIIHEAEVVK*AFHEWLEFVNVCD 80
S+N G R +S +LLW IWK+RN LFQ G+ +E+V A+ E ++N +
Sbjct: 1084 IQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLT-SSEIVAKAYEECNLWINAQE 1142
Query: 79 SGKG 68
G
Sbjct: 1143 KSSG 1146
>ref|XP_006586027.1| PREDICTED: TMV resistance protein N-like [Glycine max]
Length = 1231
Score = 63.2 bits (152), Expect = 4e-08
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENW-WQ- 263
L R + P+C ICG + ET+EH F CP + +W S +W +T SF+ W WQ
Sbjct: 1126 LFRRKLVNSPLCPICGTEPETVEHAFLFCPWTRPLWFGSDFQWCIDAKTVQSFQLWLWQK 1185
Query: 262 --DISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQ 158
+I ++ +N + Q+ + W IWK RN+++ +
Sbjct: 1186 LVEIQRVYQENANQVSAQVG-SICWAIWKGRNEFILE 1221
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 62.0 bits (149), Expect = 8e-08
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
+I RG+ +DP CQ+CG + E++ H+ F C A+ +W LS V T + GF + + +I
Sbjct: 1075 IIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVP---TSQFGFQNSSIFANI 1131
Query: 256 SKICS-KNRG--KERVQLS-IFLLWRIWKSRNDWLFQ 158
+ K +G E+++ S ++LWR+WK+R+ F+
Sbjct: 1132 QYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFE 1168
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 61.6 bits (148), Expect = 1e-07
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
L RG+ +DPIC C +NE++ H F CP A + W LS + FE ++I
Sbjct: 1229 LTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFE---ENI 1285
Query: 256 SKICS----KNRGKERVQLSIFLLWRIWKSRNDWLFQKQGIIHEAEVV--K*AFHEWL 101
S I + L ++L+WRIWK+RN+ +F K V+ K H+WL
Sbjct: 1286 SNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 1343
>gb|ESW30650.1| hypothetical protein PHAVU_002G171400g [Phaseolus vulgaris]
Length = 1235
Score = 61.2 bits (147), Expect = 1e-07
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENW-W-- 266
L R + + P+C ICG + ET+EH+F CP + +W S +W ++ SF+ W W
Sbjct: 1130 LFRRKLVISPLCPICGTEPETVEHVFLFCPWTRPLWFGSDFQWRVDVKEVQSFQLWLWHK 1189
Query: 265 -QDISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQ 158
+I ++ +N + Q+ + W IWK RN+++ +
Sbjct: 1190 LMEIQRVYPENANQISAQVG-SICWSIWKGRNEFVLE 1225
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 61.2 bits (147), Expect = 1e-07
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
L RG+ +DP C C +NE++ H F CP A + W+LS + FE ++I
Sbjct: 189 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFE---ENI 245
Query: 256 SKICS----KNRGKERVQLSIFLLWRIWKSRNDWLFQKQGIIHEAEVV--K*AFHEWL 101
S I + L ++L+WRIWK+RN+ +F K V+ K H+WL
Sbjct: 246 SNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 303
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 61.2 bits (147), Expect = 1e-07
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
L RG+ +DP C C +NE++ H F CP A + W+LS + FE ++I
Sbjct: 1455 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFE---ENI 1511
Query: 256 SKICS----KNRGKERVQLSIFLLWRIWKSRNDWLFQKQGIIHEAEVV--K*AFHEWL 101
S I + L ++L+WRIWK+RN+ +F K V+ K H+WL
Sbjct: 1512 SNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 1569
>gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus persica]
Length = 378
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQD- 260
L R V+V+ C +CG +T HLFF+C A++ W SP G F + W+
Sbjct: 239 LRRRRVDVEADCLLCGNNGKTEVHLFFRCEIARLFWFASPSHLDVHGVEGEDFLSCWECL 298
Query: 259 ISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQKQGI 146
+ K + E +Q+ F LWRIWK RN +F++Q +
Sbjct: 299 LQKFAQVEKMDEILQIVAFGLWRIWKWRNAVVFERQSL 336
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
L +R + DP CQ C +ET+ H+ F C AQ++W+ + G+ F+ +N ++I
Sbjct: 1415 LRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWR--SANFSGSNRLCFT-DNLEENI 1471
Query: 256 SKICSKNRGKERVQLSI-------FLLWRIWKSRNDWLFQK 155
I +GK+ L I +++WR+WKSRN++LFQ+
Sbjct: 1472 RLIL---QGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQ 1509
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
+I RG+ +DP CQICG + E+ H+ F C A+ +W LS V T E GF + + +I
Sbjct: 849 IIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGVP---TPEFGFQNASIFANI 905
Query: 256 SKICSKNR---GKERVQLS-IFLLWRIWKSRNDWLF 161
+ + + V+ S ++LWR+WK+RN F
Sbjct: 906 QFLFELKKMILVPDLVKRSWPWVLWRLWKNRNKLFF 941
>gb|EMJ20613.1| hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
Length = 509
Score = 58.5 bits (140), Expect = 9e-07
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQ-- 263
L R + P+C +C E++EHLF CP +W SP+ + ++ +F+NW
Sbjct: 268 LFKRKISQSPMCPVCENNEESVEHLFLLCPWTAAVWFGSPLNYRVHNQSITTFDNWLNSM 327
Query: 262 ---DISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQKQGI--IHEAEVVK*AFHEWLE 98
+++ I +NR + + F+LW IWK+R ++ + + + IH A +E++E
Sbjct: 328 FQLNLTSILDRNR---LMTIISFILWEIWKARCKFVIEGRQLHPIHVLHQAMRAANEFIE 384
Query: 97 FVNVCDS 77
NV S
Sbjct: 385 -ANVSQS 390
>ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Capsella rubella]
gi|482548097|gb|EOA12297.1| hypothetical protein
CARUB_v10007977mg [Capsella rubella]
Length = 417
Score = 58.2 bits (139), Expect = 1e-06
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFSFENWWQDI 257
L G+ +P+CQ+C + ET+ H+ F C AQ +W +S + + + EN
Sbjct: 118 LRRHGINTNPLCQVCKVEEETISHVLFGCQLAQQVWSVSGLPIPANGFSSSTVEN----- 172
Query: 256 SKICSKNRGKERVQLSI-----FLLWRIWKSRNDWLFQKQ 152
+ C GK V L +LLW IWK+RN +F ++
Sbjct: 173 VEYCFMIMGKSEVSLQSRQAIPWLLWEIWKARNGLVFAQR 212
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Frame = -3
Query: 436 LIHRGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPV------EWVGTLETGFSFE 275
L +R + + C C ET+ HL F+CP A++ W +SP+ EW +L F
Sbjct: 1081 LAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESL-----FR 1135
Query: 274 NWWQDISKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQ 158
N +S S+ + L ++LWR+WK+RND +F+
Sbjct: 1136 NMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFK 1174
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Frame = -3
Query: 427 RGVEVDPICQICGFQNETLEHLFFQCPRAQIIWKLSPVEWVGTLETGFS---FENWWQDI 257
RGV ++ C +C +NETL H+ FQCP A+ +W L+P++ + GF F N I
Sbjct: 805 RGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQ---SPNHGFGDSIFTNVNHVI 861
Query: 256 SKICSKNRGKERVQLSIFLLWRIWKSRNDWLFQKQGII 143
+ +S +++W +WK+RN LF+ G +
Sbjct: 862 GNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSV 899