BLASTX nr result
ID: Rehmannia22_contig00030291
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00030291
(348 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006349515.1| PREDICTED: THO complex subunit 4-like [Solan... 70 4e-10
ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isofor... 69 8e-10
ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isofor... 68 1e-09
ref|XP_006373955.1| hypothetical protein POPTR_0016s11470g [Popu... 67 2e-09
ref|XP_006373956.1| hypothetical protein POPTR_0016s11470g [Popu... 67 2e-09
ref|XP_002332459.1| predicted protein [Populus trichocarpa] 67 2e-09
ref|XP_002531375.1| RNA and export factor binding protein, putat... 65 9e-09
emb|CAJ44457.1| ALY protein [Nicotiana benthamiana] 65 9e-09
emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera] 64 3e-08
gb|ESW04085.1| hypothetical protein PHAVU_011G066000g [Phaseolus... 62 6e-08
ref|XP_004249625.1| PREDICTED: RNA and export factor-binding pro... 61 2e-07
emb|CAG26902.1| ALY protein [Nicotiana benthamiana] 61 2e-07
ref|XP_004294581.1| PREDICTED: THO complex subunit 4-A-like [Fra... 60 3e-07
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro... 60 4e-07
gb|EXB52242.1| RNA and export factor-binding protein 2 [Morus no... 59 5e-07
ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isof... 59 7e-07
ref|XP_006488282.1| PREDICTED: THO complex subunit 4-like isofor... 58 1e-06
ref|XP_006424776.1| hypothetical protein CICLE_v10029160mg [Citr... 58 1e-06
ref|XP_002314192.2| hypothetical protein POPTR_0009s03370g, part... 56 4e-06
gb|EOY34109.1| RNA-binding family protein [Theobroma cacao] 56 4e-06
>ref|XP_006349515.1| PREDICTED: THO complex subunit 4-like [Solanum tuberosum]
Length = 247
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/55 (67%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Frame = +1
Query: 10 RVQGRGGAIRRPQGGVRG--MRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
R Q RGG RRP+GG RG MRKD GRGRGE +SAEDLDA+LEKY AEA N
Sbjct: 193 RSQQRGGGFRRPRGGARGGSMRKDGGRGRGRGENVSAEDLDAELEKYHAEAMQTN 247
>ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571488643|ref|XP_006590992.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 68.6 bits (166), Expect = 8e-10
Identities = 36/56 (64%), Positives = 42/56 (75%), Gaps = 5/56 (8%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRV-----GGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGGA+RRP G +G+R+DR GG GRGEK+SA+DLDADLEKY AEA N
Sbjct: 192 QGRGGALRRPGGRGQGVRRDRGRGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN 247
>ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571492362|ref|XP_006592205.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 68.2 bits (165), Expect = 1e-09
Identities = 36/56 (64%), Positives = 42/56 (75%), Gaps = 5/56 (8%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRV-----GGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGGA+RRP G +G+R+DR GG GRGEK+SA+DLDADLEKY AEA N
Sbjct: 192 QGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSADDLDADLEKYHAEAMQLN 247
>ref|XP_006373955.1| hypothetical protein POPTR_0016s11470g [Populus trichocarpa]
gi|550321275|gb|ERP51752.1| hypothetical protein
POPTR_0016s11470g [Populus trichocarpa]
Length = 244
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/52 (65%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRVG-GRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGG RP+GG G+R+ G GRGRGEK+SAEDLDADLEKY +EA +N
Sbjct: 193 QGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSEAMQEN 244
>ref|XP_006373956.1| hypothetical protein POPTR_0016s11470g [Populus trichocarpa]
gi|550321276|gb|ERP51753.1| hypothetical protein
POPTR_0016s11470g [Populus trichocarpa]
Length = 245
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/52 (65%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRVG-GRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGG RP+GG G+R+ G GRGRGEK+SAEDLDADLEKY +EA +N
Sbjct: 194 QGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSEAMQEN 245
>ref|XP_002332459.1| predicted protein [Populus trichocarpa]
Length = 164
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/52 (65%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRVG-GRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGG RP+GG G+R+ G GRGRGEK+SAEDLDADLEKY +EA +N
Sbjct: 113 QGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSEAMQEN 164
>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
gi|223529035|gb|EEF31023.1| RNA and export factor
binding protein, putative [Ricinus communis]
Length = 247
Score = 65.1 bits (157), Expect = 9e-09
Identities = 34/54 (62%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Frame = +1
Query: 16 QGRGGAIRRPQGGV---RGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGG +RRP+G RG + R GRGRGEK+SAEDLDADLEKY +EA N
Sbjct: 194 QGRGGTMRRPRGASSDGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQTN 247
>emb|CAJ44457.1| ALY protein [Nicotiana benthamiana]
Length = 246
Score = 65.1 bits (157), Expect = 9e-09
Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 RVQGRGGAIRRPQGGVRG-MRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
R Q RGG RRP G RG MRK+ GRGRGE +SAEDLDADLEKY +EA + N
Sbjct: 193 RSQQRGGGFRRPPRGGRGSMRKEGGRGRGRGENISAEDLDADLEKYHSEAMETN 246
>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
Length = 281
Score = 63.5 bits (153), Expect = 3e-08
Identities = 35/56 (62%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Frame = +1
Query: 7 ARVQGRGGAIRRPQGGV--RGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
A QGRGG+ RP+GG RG + R GRGRGEK+SAEDLDADLEKY +EA N
Sbjct: 226 ACAQGRGGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN 281
>gb|ESW04085.1| hypothetical protein PHAVU_011G066000g [Phaseolus vulgaris]
Length = 234
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/56 (58%), Positives = 40/56 (71%), Gaps = 5/56 (8%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRVGGRGRG-----EKLSAEDLDADLEKYLAEAKDKN 168
QGR GA+R+P G +GM++DR GRG G +KLSA+DLDADLEKY AEA N
Sbjct: 179 QGRNGALRKPGGRGQGMQRDRGQGRGHGGGRRDDKLSADDLDADLEKYHAEAMQLN 234
>ref|XP_004249625.1| PREDICTED: RNA and export factor-binding protein 2-like isoform 2
[Solanum lycopersicum]
Length = 239
Score = 60.8 bits (146), Expect = 2e-07
Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Frame = +1
Query: 10 RVQGRGGAIRRPQGGV-RG-MRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
R Q RGG RP+GG RG MRKD GRGRG+ +SAEDLDA+LEKY AEA N
Sbjct: 185 RSQQRGGGFSRPRGGGGRGSMRKDGGRGRGRGQNVSAEDLDAELEKYHAEAMQTN 239
>emb|CAG26902.1| ALY protein [Nicotiana benthamiana]
Length = 249
Score = 60.8 bits (146), Expect = 2e-07
Identities = 34/54 (62%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 RVQGRGGAIRRPQGGVRG-MRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
R Q RGG RRP G RG MRK+ GRGR E ++AEDLDADLEKY AEA N
Sbjct: 196 RSQQRGGGFRRPPRGGRGSMRKEGGRGRGRVENITAEDLDADLEKYHAEAMQTN 249
>ref|XP_004294581.1| PREDICTED: THO complex subunit 4-A-like [Fragaria vesca subsp.
vesca]
Length = 250
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/53 (66%), Positives = 40/53 (75%), Gaps = 5/53 (9%)
Frame = +1
Query: 16 QGRGGAIRRPQGGV-RGMRKDRVGGRGRG----EKLSAEDLDADLEKYLAEAK 159
QGRGGA RP+GG RG R+ R GGRGRG EK+SAEDLDA+LEKY A A+
Sbjct: 195 QGRGGAFNRPRGGAGRGPRRGR-GGRGRGGRTGEKVSAEDLDAELEKYHATAE 246
>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
gi|297746115|emb|CBI16171.3| unnamed protein product
[Vitis vinifera]
Length = 243
Score = 59.7 bits (143), Expect = 4e-07
Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Frame = +1
Query: 16 QGRGGAIRRPQGGV--RGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGR G+ RP+GG RG + R GRGRGEK+SAEDLDADLEKY +EA N
Sbjct: 191 QGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN 243
>gb|EXB52242.1| RNA and export factor-binding protein 2 [Morus notabilis]
Length = 248
Score = 59.3 bits (142), Expect = 5e-07
Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 6/57 (10%)
Frame = +1
Query: 16 QGRGG-AIRRPQGGVRGMRKDRVG-----GRGRGEKLSAEDLDADLEKYLAEAKDKN 168
QGRGG A RP+GG G R R G GRG GEK+SA+DLDADLEKY AEA +N
Sbjct: 192 QGRGGGAFGRPRGGGGGGRGPRRGRGRGQGRGTGEKISADDLDADLEKYHAEAMQEN 248
>ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isoform X1 [Glycine max]
Length = 243
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/55 (61%), Positives = 39/55 (70%), Gaps = 4/55 (7%)
Frame = +1
Query: 16 QGRGGAIRRPQGGVRGMRKDRVG-GRGRG---EKLSAEDLDADLEKYLAEAKDKN 168
QGR G++ RP+GG RG + G GRGRG EK+SAEDLDADLEKY AEA N
Sbjct: 189 QGRSGSLGRPRGGSRGRGSIQRGRGRGRGGRDEKVSAEDLDADLEKYHAEAMQLN 243
>ref|XP_006488282.1| PREDICTED: THO complex subunit 4-like isoform X1 [Citrus sinensis]
Length = 247
Score = 57.8 bits (138), Expect = 1e-06
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Frame = +1
Query: 16 QGRGGAIRRPQGGV----RGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKD 162
QGRGGA RR +GG RG + R GR R EK+SAEDLDADL+KY +EA +
Sbjct: 190 QGRGGAFRRLRGGGGGGGRGFGRGRGRGRERNEKISAEDLDADLDKYYSEASE 242
>ref|XP_006424776.1| hypothetical protein CICLE_v10029160mg [Citrus clementina]
gi|567864256|ref|XP_006424777.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|567864258|ref|XP_006424778.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|567864260|ref|XP_006424779.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526710|gb|ESR38016.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526711|gb|ESR38017.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526712|gb|ESR38018.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526713|gb|ESR38019.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
Length = 247
Score = 57.8 bits (138), Expect = 1e-06
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Frame = +1
Query: 16 QGRGGAIRRPQGGV----RGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKD 162
QGRGGA RR +GG RG + R GR R EK+SAEDLDADL+KY +EA +
Sbjct: 190 QGRGGAFRRLRGGGGGGGRGFGRGRGRGRERNEKISAEDLDADLDKYYSEASE 242
>ref|XP_002314192.2| hypothetical protein POPTR_0009s03370g, partial [Populus
trichocarpa] gi|550330945|gb|EEE88147.2| hypothetical
protein POPTR_0009s03370g, partial [Populus trichocarpa]
Length = 135
Score = 56.2 bits (134), Expect = 4e-06
Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Frame = +1
Query: 4 NARVQGRGGAIRRPQGGV---RGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
+ RV+ RGGA+ + +GG RG+ + R GRG GEK+SAEDLDADLEKY +E+ N
Sbjct: 78 SGRVRSRGGALVQLRGGGSGGRGLGRGRGRGRGCGEKVSAEDLDADLEKYHSESMQIN 135
>gb|EOY34109.1| RNA-binding family protein [Theobroma cacao]
Length = 241
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = +1
Query: 19 GRGGAI--RRPQGGVRGMRKDRVGGRGRGEKLSAEDLDADLEKYLAEAKDKN 168
GRGG +R GG RG + R G+GRGEK+SAEDLDA+LEKY +EA N
Sbjct: 190 GRGGGFGKQRGGGGGRGFGRGRGRGKGRGEKVSAEDLDAELEKYHSEAMQTN 241