BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00029985
         (565 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   215   3e-59
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   215   4e-59
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   219   1e-58
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   216   2e-58
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   217   3e-58
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   215   4e-58
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   214   1e-57
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   216   1e-57
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   214   2e-57
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   212   1e-56
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   210   4e-56
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not...   207   2e-55
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   208   6e-55
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   208   1e-54
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   208   2e-54
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   205   2e-54
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   206   4e-54
gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subu...   205   4e-54
gb|AFK41039.1| unknown [Medicago truncatula]                          200   5e-53
ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutr...   198   2e-52

>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum tuberosum]
          Length = 319

 Score =  215 bits (548), Expect(2) = 3e-59
 Identities = 103/121 (85%), Positives = 113/121 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DASIANALRR+MIAEVPTIAIDLVEIEVNSSVLNDEFI+HRLGL+PLTSERAMSMRFSRD
Sbjct: 30  DASIANALRRIMIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCEYCSVEF+LR KC++D TLDVTSKDL SSDHTVVPVD+ D+S+  DN  N
Sbjct: 90  CDACDGDGQCEYCSVEFYLRVKCLSDQTLDVTSKDLLSSDHTVVPVDYSDTSSSFDNTPN 149

Query: 544 R 546
           +
Sbjct: 150 K 150



 Score = 39.3 bits (90), Expect(2) = 3e-59
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    RFPKIKIR V+DDFMKFEL
Sbjct: 2   EGVSYQRFPKIKIREVKDDFMKFEL 26


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  215 bits (548), Expect(2) = 4e-59
 Identities = 103/121 (85%), Positives = 113/121 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DASIANALRR+MIAEVPTIAIDLVEIEVNSSVLNDEFI+HRLGL+PLTSERAMSMRFSRD
Sbjct: 30  DASIANALRRIMIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCEYCSVEF+LR KC++D TLDVTSKDL SSDHTVVPVD+ D+S+  DN  N
Sbjct: 90  CDACDGDGQCEYCSVEFYLRVKCLSDQTLDVTSKDLLSSDHTVVPVDYSDASSSFDNTPN 149

Query: 544 R 546
           +
Sbjct: 150 K 150



 Score = 38.9 bits (89), Expect(2) = 4e-59
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    RFPKIK+R V+DDFMKFEL
Sbjct: 2   EGVSYQRFPKIKVREVKDDFMKFEL 26


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  219 bits (559), Expect(2) = 1e-58
 Identities = 109/121 (90%), Positives = 115/121 (95%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQC+YCSVEFHLRAKCI D TLDVTSKDLYSSDHTVVPVDF DSS G D+++ 
Sbjct: 90  CDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLYSSDHTVVPVDFSDSS-GYDSSEQ 148

Query: 544 R 546
           R
Sbjct: 149 R 149



 Score = 33.1 bits (74), Expect(2) = 1e-58
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFP+IKIR ++DD+ KFEL
Sbjct: 8   RFPRIKIRELKDDYCKFEL 26


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  216 bits (551), Expect(2) = 2e-58
 Identities = 108/121 (89%), Positives = 114/121 (94%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLRAKC+ D TLDVTSKDL SSDHTVVPVDF DSS G D+AD 
Sbjct: 90  CDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDFSDSS-GYDSADK 148

Query: 544 R 546
           +
Sbjct: 149 K 149



 Score = 35.8 bits (81), Expect(2) = 2e-58
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    RFPKIKIR V+DD+ KFEL
Sbjct: 2   EGVSYQRFPKIKIREVKDDYAKFEL 26


>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  217 bits (553), Expect(2) = 3e-58
 Identities = 108/121 (89%), Positives = 115/121 (95%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLRAKC+ D TLDVTSKDLYSSDHTVVPVDF DS+ G D+++ 
Sbjct: 90  CDACDGDGQCEFCSVEFHLRAKCMTDQTLDVTSKDLYSSDHTVVPVDFTDSA-GYDSSEQ 148

Query: 544 R 546
           R
Sbjct: 149 R 149



 Score = 34.3 bits (77), Expect(2) = 3e-58
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    RFPK+KIR ++DD+ KFEL
Sbjct: 2   EGVSYQRFPKVKIRELKDDYAKFEL 26


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  215 bits (548), Expect(2) = 4e-58
 Identities = 107/121 (88%), Positives = 114/121 (94%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLRAKC+ D TLDVTSKDL SSDHTVVPVDF DSS G D+AD 
Sbjct: 90  CDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDFSDSS-GYDSADK 148

Query: 544 R 546
           +
Sbjct: 149 K 149



 Score = 35.8 bits (81), Expect(2) = 4e-58
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    RFPKIKIR V+DD+ KFEL
Sbjct: 2   EGVSYQRFPKIKIREVKDDYAKFEL 26


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
           [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
           DNA-directed RNA polymerase II 36 kDa polypeptide B
           family protein [Populus trichocarpa]
          Length = 323

 Score =  214 bits (545), Expect(2) = 1e-57
 Identities = 106/120 (88%), Positives = 109/120 (90%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM MRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCEYCSVEFHLRAKCI D TLDVTSKDLYSSDH V+PVDF D S   D  D+
Sbjct: 90  CDACDGDGQCEYCSVEFHLRAKCITDQTLDVTSKDLYSSDHAVIPVDFSDPSDANDPFDH 149



 Score = 35.4 bits (80), Expect(2) = 1e-57
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFPKIKIR ++DD++KFEL
Sbjct: 8   RFPKIKIREMKDDYLKFEL 26


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cicer arietinum]
          Length = 319

 Score =  216 bits (550), Expect(2) = 1e-57
 Identities = 105/121 (86%), Positives = 112/121 (92%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMI+EVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSRD
Sbjct: 30  DASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCEYCSVEFHLR KCI D TLDVTSKDLYSSDHTVVPVDF    + L+++D 
Sbjct: 90  CDACDGDGQCEYCSVEFHLRVKCITDQTLDVTSKDLYSSDHTVVPVDFSADPSSLESSDG 149

Query: 544 R 546
           R
Sbjct: 150 R 150



 Score = 33.5 bits (75), Expect(2) = 1e-57
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    R P++KIR ++DD+MKFEL
Sbjct: 2   EGASYARMPRVKIRELKDDYMKFEL 26


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  214 bits (544), Expect(2) = 2e-57
 Identities = 106/118 (89%), Positives = 110/118 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNA 537
           CDACDGDGQCE+CSVEFHLRAKC +D TLDVTSKDLYSSDHTVVPVDF DS+     A
Sbjct: 90  CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAATGEA 147



 Score = 35.0 bits (79), Expect(2) = 2e-57
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFPK+KIR +RDD+ KFEL
Sbjct: 8   RFPKVKIRELRDDYAKFEL 26


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  212 bits (539), Expect(2) = 1e-56
 Identities = 106/121 (87%), Positives = 113/121 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLRAKC +D TLDVTSKDLYSSDH+VVPVDF D + G D+ D 
Sbjct: 90  CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA-GYDSTDQ 148

Query: 544 R 546
           +
Sbjct: 149 Q 149



 Score = 33.9 bits (76), Expect(2) = 1e-56
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFPK+KIR ++DD+ KFEL
Sbjct: 8   RFPKVKIRELKDDYAKFEL 26


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  210 bits (535), Expect(2) = 4e-56
 Identities = 102/121 (84%), Positives = 115/121 (95%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFIAHRLGLIPLTS+RAMSMRFSRD
Sbjct: 30  DASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLRAKC +D TLDVTSKDL SSDHTVVPVDF DS+ G+++++ 
Sbjct: 90  CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLLSSDHTVVPVDFSDSA-GMESSEQ 148

Query: 544 R 546
           +
Sbjct: 149 K 149



 Score = 33.9 bits (76), Expect(2) = 4e-56
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           R P++KIR +RDD+MKFEL
Sbjct: 8   RLPRVKIREMRDDYMKFEL 26


>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 588

 Score =  207 bits (527), Expect(2) = 2e-55
 Identities = 103/121 (85%), Positives = 113/121 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS+RAMSMRFSRD
Sbjct: 30  DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSDRAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEF LRAKCI+D TLDVTSKDLY++DHTVVP+DF D + G ++ D 
Sbjct: 90  CDACDGDGQCEFCSVEFLLRAKCISDQTLDVTSKDLYTADHTVVPIDFSDPA-GDESGDQ 148

Query: 544 R 546
           R
Sbjct: 149 R 149



 Score = 35.0 bits (79), Expect(2) = 2e-55
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFPK+KIR ++DD++KFEL
Sbjct: 8   RFPKVKIREMKDDYLKFEL 26


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  208 bits (529), Expect(2) = 6e-55
 Identities = 102/121 (84%), Positives = 113/121 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVLNDEFIAHRLGLIPLTS+RAMSMRFSRD
Sbjct: 30  DASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCEYCSVEFHLRA+C +D TLDVTSK+L SSDHTVVPVDF D+S G + ++ 
Sbjct: 90  CDACDGDGQCEYCSVEFHLRARCHSDQTLDVTSKELLSSDHTVVPVDFSDAS-GYEASEQ 148

Query: 544 R 546
           R
Sbjct: 149 R 149



 Score = 32.3 bits (72), Expect(2) = 6e-55
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFP++KIR +R D++KFEL
Sbjct: 8   RFPRVKIREMRHDYLKFEL 26


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Glycine max]
          Length = 320

 Score =  208 bits (530), Expect(2) = 1e-54
 Identities = 105/120 (87%), Positives = 109/120 (90%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DASIANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 31  DASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 90

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLR KC+ D TLDVTSKDLYSSD TV PVDF D S   D+ DN
Sbjct: 91  CDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDPTVSPVDFSDPS-ATDSPDN 149



 Score = 30.8 bits (68), Expect(2) = 1e-54
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 102 GFWIVRFPKIKIRTVRDDFMKFEL 173
           G    R P++KIR ++DD+ KFEL
Sbjct: 4   GVSYARMPRVKIRELKDDYAKFEL 27


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Glycine max]
          Length = 319

 Score =  208 bits (529), Expect(2) = 2e-54
 Identities = 105/118 (88%), Positives = 109/118 (92%), Gaps = 1/118 (0%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DASIANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 31  DASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 90

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPD-SSTGLDN 534
           CDACDGDGQCE+CSVEFHLR KC+ D TLDVTSKDLYSSD TV PVDF D S+T  DN
Sbjct: 91  CDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDPTVSPVDFSDPSATDSDN 148



 Score = 30.8 bits (68), Expect(2) = 2e-54
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 102 GFWIVRFPKIKIRTVRDDFMKFEL 173
           G    R P++KIR ++DD+ KFEL
Sbjct: 4   GVSYARMPRVKIRELKDDYAKFEL 27


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
           gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
           [Medicago truncatula] gi|355508950|gb|AES90092.1|
           DNA-directed RNA polymerase II subunit RPB3-A [Medicago
           truncatula]
          Length = 318

 Score =  205 bits (521), Expect(2) = 2e-54
 Identities = 98/117 (83%), Positives = 106/117 (90%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSRD
Sbjct: 30  DASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDN 534
           CDACDGDGQCEYCSVEFHLR KCI D TLDV+SKDL SSDHTV PVD P     +++
Sbjct: 90  CDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASIES 146



 Score = 33.5 bits (75), Expect(2) = 2e-54
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    R P++KIR ++DD+MKFEL
Sbjct: 2   EGASYARMPRVKIRELKDDYMKFEL 26


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  206 bits (525), Expect(2) = 4e-54
 Identities = 103/121 (85%), Positives = 113/121 (93%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD
Sbjct: 30  DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CDACDGDGQCE+CSVEFHLR KC+ D TLDV+SKDLYSSD +VVPVDF D ++  D++++
Sbjct: 90  CDACDGDGQCEFCSVEFHLRVKCMTDQTLDVSSKDLYSSDPSVVPVDFSDPAS-TDSSES 148

Query: 544 R 546
           R
Sbjct: 149 R 149



 Score = 31.2 bits (69), Expect(2) = 4e-54
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    R P++KIR ++DD+ KFEL
Sbjct: 2   EGASYARMPRVKIRELKDDYAKFEL 26


>gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
           sativa]
          Length = 184

 Score =  205 bits (521), Expect(2) = 4e-54
 Identities = 99/117 (84%), Positives = 106/117 (90%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMI+EVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSRD
Sbjct: 25  DASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 84

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDN 534
           CDACDGDGQCEYCSVEFHLR KCI D TLDV+SKDL SSDHTV PVD P     +++
Sbjct: 85  CDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASVES 141



 Score = 32.7 bits (73), Expect(2) = 4e-54
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           R P++KIR ++DD+MKFEL
Sbjct: 3   RMPRVKIRELKDDYMKFEL 21


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  200 bits (509), Expect(2) = 5e-53
 Identities = 97/117 (82%), Positives = 105/117 (89%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           DAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSRD
Sbjct: 30  DASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 89

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDN 534
           CDACDGDGQCEYCSVEFHLR K I D TLDV+SKDL SSDHTV PVD P     +++
Sbjct: 90  CDACDGDGQCEYCSVEFHLRVKRITDQTLDVSSKDLISSDHTVTPVDVPGGDASIES 146



 Score = 33.5 bits (75), Expect(2) = 5e-53
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  QGFWIVRFPKIKIRTVRDDFMKFEL 173
           +G    R P++KIR ++DD+MKFEL
Sbjct: 2   EGASYARMPRVKIRELKDDYMKFEL 26


>ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
           gi|557110719|gb|ESQ51010.1| hypothetical protein
           EUTSA_v10022739mg [Eutrema salsugineum]
          Length = 369

 Score =  198 bits (504), Expect(2) = 2e-52
 Identities = 94/121 (77%), Positives = 109/121 (90%)
 Frame = +1

Query: 184 DASIANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 363
           D S+ANALRRVMI+EVPT+AIDLVEI++NSSVLNDEFIAHRLGLIPLTSERAMSMR SRD
Sbjct: 80  DVSMANALRRVMISEVPTVAIDLVEIDINSSVLNDEFIAHRLGLIPLTSERAMSMRLSRD 139

Query: 364 CDACDGDGQCEYCSVEFHLRAKCINDHTLDVTSKDLYSSDHTVVPVDFPDSSTGLDNADN 543
           CD+CDGDGQCE+CSVEF L+AKC+ D TLDVTS+DLYS+D TV PVDF   S+G D+++ 
Sbjct: 140 CDSCDGDGQCEFCSVEFRLQAKCVTDQTLDVTSRDLYSTDPTVTPVDFTLDSSGTDSSEQ 199

Query: 544 R 546
           R
Sbjct: 200 R 200



 Score = 33.9 bits (76), Expect(2) = 2e-52
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 117 RFPKIKIRTVRDDFMKFEL 173
           RFPK+KIR ++DD+ KFEL
Sbjct: 58  RFPKVKIRELKDDYAKFEL 76