BLASTX nr result
ID: Rehmannia22_contig00029506
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00029506
(479 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 260 1e-67
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 232 3e-59
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 229 2e-58
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 228 5e-58
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 228 5e-58
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 228 5e-58
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 228 5e-58
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 228 5e-58
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 228 6e-58
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 202 5e-50
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 163 3e-38
gb|AHB59866.1| replicase [Narcissus mosaic virus] 100 3e-19
ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus viru... 99 8e-19
ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus ... 98 1e-18
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z... 97 2e-18
gb|AGO03686.1| RNA dependent RNA polymerase, partial [Actinidia ... 97 2e-18
ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp... 96 5e-18
ref|YP_319827.1| replicase protein [Alstroemeria virus x] gi|742... 96 6e-18
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 94 1e-17
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 94 2e-17
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 260 bits (665), Expect = 1e-67
Identities = 126/159 (79%), Positives = 137/159 (86%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLRAD
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRAD 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFTRP PVNP+DA
Sbjct: 374 MQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLK 1
+T +FREF S T+ + LE S E+ +HTSLK
Sbjct: 434 ETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLK 472
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 232 bits (592), Expect = 3e-59
Identities = 114/159 (71%), Positives = 129/159 (81%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL +
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFTRP PVNP+DA
Sbjct: 374 ATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAENLASHTSLK 1
+T +F+ F A A + +LE AE H SL+
Sbjct: 434 ETTHSFQAFCQAAAA-----VETTLEQQAETPDEHQSLR 467
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 229 bits (585), Expect = 2e-58
Identities = 116/161 (72%), Positives = 131/161 (81%), Gaps = 3/161 (1%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL++
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 ITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREF---SYTAEASTPTTIADSLEGSAENLASHTSL 4
+T ++F+ F + TAEA +LE AE H SL
Sbjct: 434 ETTQSFQAFCQATITAEA--------ALEQQAETPDEHQSL 466
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 228 bits (582), Expect = 5e-58
Identities = 111/151 (73%), Positives = 127/151 (84%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAEN 25
+T ++F+ F A A+ T+A E E+
Sbjct: 434 ETTQSFQAFC-QATATVEATLAQQSETPDEH 463
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 228 bits (582), Expect = 5e-58
Identities = 111/151 (73%), Positives = 127/151 (84%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAEN 25
+T ++F+ F A A+ T+A E E+
Sbjct: 434 ETTQSFQAFC-QATATVEATLAQQSETPDEH 463
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 228 bits (582), Expect = 5e-58
Identities = 111/151 (73%), Positives = 127/151 (84%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAEN 25
+T ++F+ F A A+ T+A E E+
Sbjct: 434 ETTQSFQAFC-QATATVEATLAQQSETPDEH 463
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 228 bits (582), Expect = 5e-58
Identities = 111/151 (73%), Positives = 127/151 (84%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAEN 25
+T ++F+ F A A+ T+A E E+
Sbjct: 434 ETTQSFQAFC-QATATVEATLAQQSETPDEH 463
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 228 bits (582), Expect = 5e-58
Identities = 111/151 (73%), Positives = 127/151 (84%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAEN 25
+T ++F+ F A A+ T+A E E+
Sbjct: 434 ETTQSFQAFC-QATATVEATLAQQSETPDEH 463
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 228 bits (581), Expect = 6e-58
Identities = 111/151 (73%), Positives = 127/151 (84%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 117 DTMRAFREFSYTAEASTPTTIADSLEGSAEN 25
+T ++F+ F A A+ T+A E E+
Sbjct: 434 ETTQSFQAFC-QATATVEXTLAQQSETPDEH 463
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 202 bits (513), Expect = 5e-50
Identities = 103/154 (66%), Positives = 115/154 (74%)
Frame = -3
Query: 462 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVL 283
+QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L + I R+L
Sbjct: 318 QQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRIL 376
Query: 282 QFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRA 103
QFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNPEDAD
Sbjct: 377 QFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSR 436
Query: 102 FREFSYTAEASTPTTIADSLEGSAENLASHTSLK 1
F++FS ++ T+ LE SAE+ HT LK
Sbjct: 437 FQDFSRATNSTPKPTVEAVLEASAESPDHHTQLK 470
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 163 bits (412), Expect = 3e-38
Identities = 79/125 (63%), Positives = 93/125 (74%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R +
Sbjct: 313 LWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVN 372
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
Q +++FF+G P KLIKAL WQP+ LEF V TV R PPGF +P RP PVN DA
Sbjct: 373 WQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDA 432
Query: 117 DTMRA 103
T A
Sbjct: 433 LTTAA 437
>gb|AHB59866.1| replicase [Narcissus mosaic virus]
Length = 1630
Score = 99.8 bits (247), Expect = 3e-19
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK RQ+I T EL+ Y P EI L NYF F ++LDS TC+ED+LS N+ RL RPLR
Sbjct: 318 IYAKIRQIIPTSELELYDPDEIVHLANYFSFVSNLDSITCYEDLLSSNIWTRLTRPLRTA 377
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVRTVNTRLR 178
+++ ++FF+G+ F KL+ AL WQP + ++F V+ R+R
Sbjct: 378 VRKFVEFFKGKQDFDKLLIALKWQPFSYSLEPVDFTAYFVSRRVR 422
>ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus virus 3]
gi|169219513|dbj|BAG12158.1| RNA dependent RNA
polymerase [Asparagus virus 3]
Length = 1614
Score = 98.6 bits (244), Expect = 8e-19
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AKFRQ+IST+EL+ Y+P EI L NYF F A LDS TC+ED+L +L +RL P+R
Sbjct: 318 IYAKFRQIISTQELELYEPDEIVHLCNYFNFVAHLDSITCYEDLLGNSLWRRLTIPIRTT 377
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVR 199
I + L FFRG+ SF KL+ AL W+ + ++F VR
Sbjct: 378 ITKALDFFRGQQSFSKLLGALKWESFSYSLEPIDFTVR 415
>ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus X]
gi|189458580|emb|CAN88808.1| RNA-dependent RNA
polymerase [Lettuce virus X]
Length = 1708
Score = 97.8 bits (242), Expect = 1e-18
Identities = 45/99 (45%), Positives = 65/99 (65%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK Q++ T EL+ Y+P E+ L NYF F ++L S+TC+ED+LSG LI+RL RP+R
Sbjct: 318 IYAKIHQVLPTNELELYEPDELVHLANYFFFLSNLKSYTCYEDLLSGGLIKRLTRPVRTA 377
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRL 181
+ R ++FF GR F KL+ AL W+P T T++
Sbjct: 378 VTRFIEFFAGRNDFNKLMDALKWEPFTYTLEPAVYKTKV 416
>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
Length = 1643
Score = 97.4 bits (241), Expect = 2e-18
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK RQ+I T EL+ Y P EI L NYF F ++LDS TC+ED+LS ++ RL RPLR
Sbjct: 318 IYAKIRQIIPTSELELYDPDEIVHLANYFFFVSNLDSTTCYEDLLSSDIWMRLTRPLRTA 377
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVRTVNTRLR 178
+++ ++FF+G+ F KL+ AL WQP + ++F V+ R+R
Sbjct: 378 VRKFVEFFKGKQDFDKLLIALKWQPFSYSLEPVDFTAYFVSRRVR 422
>gb|AGO03686.1| RNA dependent RNA polymerase, partial [Actinidia virus X]
Length = 1607
Score = 97.1 bits (240), Expect = 2e-18
Identities = 45/87 (51%), Positives = 64/87 (73%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK RQLI T+EL+ Y+P EI L NYF F A LDS TCFED+LS N+ +RL P+R +
Sbjct: 323 IYAKIRQLIPTQELELYEPDEIVHLANYFYFMAHLDSITCFEDMLSNNVWRRLTLPIRTN 382
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPIT 217
+++++FF+G+ F KL++AL W+ T
Sbjct: 383 FRQLVEFFKGKSDFDKLLQALKWETFT 409
>ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp|P15095.1|RDRP_NMV
RecName: Full=RNA replication protein; AltName: Full=186
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222108|dbj|BAA02891.1| 186K
protein [Narcissus mosaic virus]
Length = 1643
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK RQ+I T EL+ Y P EI L NYF F +SLDS TC+ED+LS ++ RL RPLR
Sbjct: 318 IYAKIRQIIPTSELELYDPDEIVHLANYFFFVSSLDSITCYEDLLSSDIWMRLTRPLRTA 377
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVRTVNTRLR 178
+++ ++ F+G+ F KL+ AL WQP + ++F V+ R+R
Sbjct: 378 VRKFVELFKGKQDFDKLLIALKWQPFSYSLEPVDFTAYFVSRRVR 422
>ref|YP_319827.1| replicase protein [Alstroemeria virus x]
gi|74267429|dbj|BAE44211.1| replicase protein
[Alstroemeria virus x]
Length = 1646
Score = 95.5 bits (236), Expect = 6e-18
Identities = 48/128 (37%), Positives = 76/128 (59%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK RQ++ T+EL+ Y+P+E+ +VNYF F A+L S TC+ED+LSG+L++R+ P+R
Sbjct: 318 IYAKIRQVLRTEELELYEPAEVAHIVNYFYFIANLHSITCYEDLLSGSLLKRMTVPIRTA 377
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDA 118
I + ++ FRG+ FVKL+ AL W T + T++ H P+ +A
Sbjct: 378 ITKFVEVFRGKNDFVKLLDALKWDNFTYSIKPEDMTTKMDSHQVNHLVEEYGIPIKEAEA 437
Query: 117 DTMRAFRE 94
+ RE
Sbjct: 438 TIAQLHRE 445
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 94.4 bits (233), Expect = 1e-17
Identities = 47/96 (48%), Positives = 61/96 (63%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRAD 298
I+AK RQLI T +LQ + SE+ +VNYF F A DS TCF D+LSG+L ++L +PL A
Sbjct: 312 IYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQPLAAF 371
Query: 297 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 190
+ F G P F KL+KAL WQ IT+ V +N
Sbjct: 372 LAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 94.0 bits (232), Expect = 2e-17
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Frame = -3
Query: 477 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRA- 301
IWAK RQL+ T ELQ Y P E+TLLVNYF A L S TCF++VLSG + ++L +P A
Sbjct: 320 IWAKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAW 379
Query: 300 -DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 184
+IQ+ F G F +L++AL+W +TL +P +T + R
Sbjct: 380 WEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417