BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00029437
         (569 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    43   7e-07
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    42   9e-07
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    40   1e-06
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    39   7e-06

>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 43.1 bits (100), Expect(2) = 7e-07
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 2   WKCLNGFLPTADNLRKKRVEVDPICCVCGEEIESIDHIFF 121
           W+C+ G L T   LR + ++ DPIC  C  E E+I HI F
Sbjct: 51  WRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMF 90



 Score = 35.8 bits (81), Expect(2) = 7e-07
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 126 CPRARLVWKLTPVMWSCPHPKSGVFHSWWEHLCSVGKNETNQNRVQ-LSVYILW*LWKCR 302
           CP  + VW+   ++          F      L  + K +T  +  + L  +I+W LWK R
Sbjct: 92  CPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151

Query: 303 NLWLFQK 323
           N++LFQ+
Sbjct: 152 NVFLFQQ 158


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 41.6 bits (96), Expect(2) = 9e-07
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 2    WKCLNGFLPTADNLRKKRVEVDPICCVCGEEIESIDHIFF 121
            WK L+G +P  D LR + +  D  C +C  E E+I+HI F
Sbjct: 1059 WKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILF 1098



 Score = 37.0 bits (84), Expect(2) = 9e-07
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +3

Query: 126  CPRARLVWKLTPVMWSCPHPKSGVFHSWWEHLCSVGKNETNQNRVQLSVYILW*LWKCRN 305
            CP AR VW +T +  +     + V+ +    +    +N+   +   +S +ILW LWK RN
Sbjct: 1100 CPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRN 1159

Query: 306  LWLFQKVFVFERELVNRA 359
              LF+        LV++A
Sbjct: 1160 ALLFEGKGSITTTLVDKA 1177


>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score = 40.0 bits (92), Expect(2) = 1e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 2    WKCLNGFLPTADNLRKKRVEVDPICCVCGEEIESIDHIFF 121
            WK L G L   D LR + +     C  C EEIE+I+H+ F
Sbjct: 1012 WKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLF 1051



 Score = 38.1 bits (87), Expect(2) = 1e-06
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = +3

Query: 126  CPRARLVWKLTPVMWSCPHPKSGVFHSWWEHLCSVGKNETN----QNRVQLSVYILW*LW 293
            CP AR VW L+ +      P +G   S + ++  V +N  N    ++   +S ++LW +W
Sbjct: 1053 CPFARQVWALSLIQ----APATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIW 1108

Query: 294  KCRNLWLFQKVFVFERELVNRA 359
            K RN  LFQ   +   E+V +A
Sbjct: 1109 KNRNKTLFQGTGLTSSEIVAKA 1130


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1094

 Score = 38.9 bits (89), Expect(2) = 7e-06
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 126  CPRARLVWKLTPVMWSCPHPKSGVFHSWWEHLCSVGKN----ETNQNRVQLSVYILW*LW 293
            CP AR VW LTP+      P  G   S + ++  V  N    E + +   +S +I+W LW
Sbjct: 830  CPLARQVWALTPMQ----SPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILW 885

Query: 294  KCRNLWLFQKVFVFERELVNRA*AD 368
            K RN  LF+ +      +V +A  D
Sbjct: 886  KNRNKRLFEGIGSVSLSIVGKALED 910



 Score = 36.6 bits (83), Expect(2) = 7e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 2   WKCLNGFLPTADNLRKKRVEVDPICCVCGEEIESIDHIFF 121
           WK L G +   D LR + V ++  C +C E+ E+++HI F
Sbjct: 789 WKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHILF 828