BLASTX nr result
ID: Rehmannia22_contig00028295
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00028295
(1296 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 132 3e-28
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 132 3e-28
gb|AAX95129.1| retrotransposon protein, putative, unclassified [... 125 4e-26
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 125 4e-26
gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japo... 125 4e-26
gb|ABA91837.2| retrotransposon protein, putative, unclassified [... 125 4e-26
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 123 1e-25
ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [S... 122 2e-25
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S... 121 6e-25
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 121 7e-25
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 120 9e-25
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi... 120 1e-24
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 120 2e-24
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 120 2e-24
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ... 120 2e-24
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 118 5e-24
gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japo... 118 6e-24
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 118 6e-24
gb|AAD22286.1| putative non-LTR retroelement reverse transcripta... 117 1e-23
gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [... 116 2e-23
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 132 bits (332), Expect = 3e-28
Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 3/260 (1%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGEV 1110
RLDR G W FP + + + SDH +++ ++ + +F FDKR+L K +V
Sbjct: 156 RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDV 215
Query: 1109 NAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGEG 930
+ + W+ GT + + +++ R L W K ++LNS +I + LE+
Sbjct: 216 KEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQS-- 272
Query: 929 AKRDWGEWHN---LKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNA 759
W + LKKDL KAY++EE YWKQK+R KWL G++N+K+FHA V Q +
Sbjct: 273 --LVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKR 330
Query: 758 IERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRN 579
IE+L +G + S + + ++ +LF SS+P+ SG+ V E + L
Sbjct: 331 IEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGE 390
Query: 578 VXXXXEIKKALFELHPHKAP 519
V EIK+A+F + P AP
Sbjct: 391 V-SAQEIKEAVFSIKPASAP 409
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 132 bits (332), Expect = 3e-28
Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 3/260 (1%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGEV 1110
RLDR G W FP + + + SDH +++ ++ + +F FDKR+L K +V
Sbjct: 159 RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDV 218
Query: 1109 NAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGEG 930
+ + W+ GT + + +++ R L W K ++LNS +I + LE+
Sbjct: 219 KEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQS-- 275
Query: 929 AKRDWGEWHN---LKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNA 759
W + LKKDL KAY++EE YWKQK+R KWL G++N+K+FHA V Q +
Sbjct: 276 --LVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKR 333
Query: 758 IERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRN 579
IE+L +G + S + + ++ +LF SS+P+ SG+ V E + L
Sbjct: 334 IEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGE 393
Query: 578 VXXXXEIKKALFELHPHKAP 519
V EIK+A+F + P AP
Sbjct: 394 V-SAQEIKEAVFSIKPASAP 412
>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|62733115|gb|AAX95232.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group]
Length = 1324
Score = 125 bits (314), Expect = 4e-26
Identities = 90/276 (32%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Frame = -2
Query: 1292 ERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLD------WNPNRVKGKKRFCFDKR 1131
ERLDR S+W FP+ +V SDHH +++ WN R K F F+
Sbjct: 642 ERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGR--SKPGFRFEAG 699
Query: 1130 WLEKGEVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQL 951
W + +VE AW V G + ++ I++ +L W KN + KRIK L
Sbjct: 700 WAREEHCAPIVENAWKLSV-GPRGGKVMDAIREVAANLWDWSKNFLGDLEKRIKKAKQAL 758
Query: 950 EQ-----LNGEGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHAC 786
E ++ A R+ LK L K + E YW+Q+A WL GD+NTKFFH C
Sbjct: 759 EAHRRSPISSSTASRE----AVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHEC 814
Query: 785 VVQRNRTNAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDE 606
+R + N I++L R DG + + +S+FYK LFT+ P +L +P+ V
Sbjct: 815 ASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTS 874
Query: 605 SAKQWLTRNVXXXXEIKKALFELHPHKAPAAICSIP 498
+ L + V EIKKAL + KAP +P
Sbjct: 875 TMNDELMKGV-TTEEIKKALDSIGDLKAPPGSDGMP 909
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 125 bits (314), Expect = 4e-26
Identities = 86/264 (32%), Positives = 130/264 (49%), Gaps = 6/264 (2%)
Frame = -2
Query: 1292 ERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRV--KGKKRFCFDKRWLEK 1119
ERLDR W +FP+ +V H+ R+ SDH ++L N +G K F F+ WL K
Sbjct: 194 ERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSK 253
Query: 1118 GEVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKA----INGQL 951
E +VE+AWN G+ I ++ + L W + N KR K +NG L
Sbjct: 254 EECGKIVEEAWN----GSAGEDITNRLDEVSRSLSTWATKTFGNLKKRKKEALTLLNG-L 308
Query: 950 EQLNGEGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRN 771
+Q + + + + + + DL + ++ EE+YW +AR + DGDKNTK+FH QR
Sbjct: 309 QQRDPDASTLE--QCRIVSGDLDEIHRLEESYWHARARANEIRDGDKNTKYFHHKASQRK 366
Query: 770 RTNAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQW 591
R N I L+ +GV + I V +++ LF + SP L G+ V
Sbjct: 367 RRNTINELLDENGVWKKGREEICGVVQHYFEGLFATDSPVNMELALEGLSHCVSTDMNTA 426
Query: 590 LTRNVXXXXEIKKALFELHPHKAP 519
L + E+K+ALF +HP+KAP
Sbjct: 427 LLM-LPSGDEVKEALFAMHPNKAP 449
Score = 74.3 bits (181), Expect = 1e-10
Identities = 41/126 (32%), Positives = 61/126 (48%)
Frame = -2
Query: 512 ICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGRNKAMWKR 333
+ SIPLS+ D W + +G +SV+S Y + L + R +W+R
Sbjct: 992 VLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWL----GRLGPVRTWQLQHGERETELWRR 1047
Query: 332 TWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERAA 153
W+L+ KL HFLWR L K +L R + V C CG+ +E+I H F C A
Sbjct: 1048 VWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFAR 1107
Query: 152 RIWKIA 135
IW+++
Sbjct: 1108 AIWQVS 1113
>gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japonica Group]
Length = 825
Score = 125 bits (314), Expect = 4e-26
Identities = 90/276 (32%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Frame = -2
Query: 1292 ERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLD------WNPNRVKGKKRFCFDKR 1131
ERLDR S+W FP+ +V SDHH +++ WN R K F F+
Sbjct: 143 ERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGR--SKPGFRFEAG 200
Query: 1130 WLEKGEVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQL 951
W + +VE AW V G + ++ I++ +L W KN + KRIK L
Sbjct: 201 WAREEHCAPIVENAWKLSV-GPRGGKVMDAIREVAANLWDWSKNFLGDLEKRIKKAKQAL 259
Query: 950 EQ-----LNGEGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHAC 786
E ++ A R+ LK L K + E YW+Q+A WL GD+NTKFFH C
Sbjct: 260 EAHRRSPISSSTASRE----AVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHEC 315
Query: 785 VVQRNRTNAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDE 606
+R + N I++L R DG + + +S+FYK LFT+ P +L +P+ V
Sbjct: 316 ASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTS 375
Query: 605 SAKQWLTRNVXXXXEIKKALFELHPHKAPAAICSIP 498
+ L + V EIKKAL + KAP +P
Sbjct: 376 TMNDELMKGV-TTEEIKKALDSIGDLKAPPGSDGMP 410
>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1301
Score = 125 bits (314), Expect = 4e-26
Identities = 90/276 (32%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Frame = -2
Query: 1292 ERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLD------WNPNRVKGKKRFCFDKR 1131
ERLDR S+W FP+ +V SDHH +++ WN R K F F+
Sbjct: 619 ERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGR--SKPGFRFEAG 676
Query: 1130 WLEKGEVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQL 951
W + +VE AW V G + ++ I++ +L W KN + KRIK L
Sbjct: 677 WAREEHCAPIVENAWKLSV-GPRGGKVMDAIREVAANLWDWSKNFLGDLEKRIKKAKQAL 735
Query: 950 EQ-----LNGEGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHAC 786
E ++ A R+ LK L K + E YW+Q+A WL GD+NTKFFH C
Sbjct: 736 EAHRRSPISSSTASRE----AVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHEC 791
Query: 785 VVQRNRTNAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDE 606
+R + N I++L R DG + + +S+FYK LFT+ P +L +P+ V
Sbjct: 792 ASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTS 851
Query: 605 SAKQWLTRNVXXXXEIKKALFELHPHKAPAAICSIP 498
+ L + V EIKKAL + KAP +P
Sbjct: 852 TMNDELMKGV-TTEEIKKALDSIGDLKAPPGSDGMP 886
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 123 bits (309), Expect = 1e-25
Identities = 79/259 (30%), Positives = 119/259 (45%)
Frame = -2
Query: 1295 EERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKG 1116
+ RLDR G NW FP + + + SDH +++ + + + F FDKR +
Sbjct: 193 QSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNFRFDKRLFNQP 252
Query: 1115 EVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNG 936
V + +AWN + + K+K R L +W K +++NS+ RI LE
Sbjct: 253 NVKETIVQAWNGSQRNENLLVLD-KLKHCRSALSRWKKENNINSSTRITQARAALELEQS 311
Query: 935 EGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAI 756
G R +LK DLCKA DEE +W QK+R KW++ GDKNT FFHA V I
Sbjct: 312 SGFPRA-DLVFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHI 370
Query: 755 ERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNV 576
++L +G+ + ++ LF S+ P+ + V ES L V
Sbjct: 371 DQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNNTLIAAV 430
Query: 575 XXXXEIKKALFELHPHKAP 519
EI++A+F + AP
Sbjct: 431 -SKNEIREAVFAIRSSSAP 448
Score = 89.4 bits (220), Expect = 3e-15
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Frame = -2
Query: 476 DKLVWLHNSSGKYSVQSAYKVVLQANE---LRSDHP*ASANQGRNKAMWKRTWKLRVKGK 306
D VWLH+ SG+YSV+S Y + Q N+ +R S N + ++ W K
Sbjct: 1002 DFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTN-----GLKEKIWSTLTSPK 1056
Query: 305 LKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERAARIWKIAPVF 126
+K FLWR + + LP Q+I RG+ + P C CGE+ E+I H+ F C A ++W ++ V
Sbjct: 1057 IKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVP 1116
Query: 125 WKGPSFEQESFKDWWTFITEVKREKIHEDRLQLT-TYLLWWL 3
F+ S ++ E+K + + ++++ + ++LW L
Sbjct: 1117 TSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRL 1158
>ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [Sorghum bicolor]
gi|241936686|gb|EES09831.1| hypothetical protein
SORBIDRAFT_05g019526 [Sorghum bicolor]
Length = 1209
Score = 122 bits (307), Expect = 2e-25
Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 5/262 (1%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNP--NRVKGKKRFCFDKRWLEKG 1116
RLDR W FP AKV HI +SDH I+L W R + +++F ++ W
Sbjct: 459 RLDRALATPEWSARFPLAKVRHITAAASDHGPIVLQWEAAQGRQRQRRQFRYETMWETHE 518
Query: 1115 EVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNG 936
+ V+ + W + T ++Q K++ L W + ++ +K + +LE +
Sbjct: 519 DFANVISQTWQRGTKATTAHELQSKLRSVSCKLNHWEVRTFGQVSRELKGLRRELEMMQA 578
Query: 935 EGAKRDWGEWH---NLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRT 765
+ ++ G H +K+ + + EE WKQ+AR++WL+ GDKNT FFH +R +
Sbjct: 579 DVNRQ--GPSHVELKIKERIMELNHREELMWKQRARIQWLSAGDKNTHFFHLRASRRRKR 636
Query: 764 NAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLT 585
N I +L A+G + + + FYK L+T+ A+L +P V L
Sbjct: 637 NMIVKLKTANGQVTEDRKEMGQMATSFYKLLYTAEGTENMEAVLETVPAKVTTEMNDKLI 696
Query: 584 RNVXXXXEIKKALFELHPHKAP 519
EIK+ALF++ P KAP
Sbjct: 697 A-PFSELEIKEALFQMFPTKAP 717
Score = 72.0 bits (175), Expect = 5e-10
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Frame = -2
Query: 542 ELHPHKAPA---AICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKV-VLQANELR--SDH 381
+LH AP I +IPLS Q D W ++ +G ++V+SAY++ VL+ N + SD
Sbjct: 1018 KLHEFFAPMDRETIVNIPLSTRRQSDFWAWHYDKNGIFTVRSAYRMLVLRKNNMTACSDS 1077
Query: 380 P*ASANQGRNKAMWKRTWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGE 201
++ ++ W W ++V K+K FLWR LP+ L HR +K C CG
Sbjct: 1078 VAGRSSTKADEKEWTALWHVQVPSKIKVFLWRLARQSLPSGDVLHHRNLKAQSTCAICGA 1137
Query: 200 KEETIMHIFFQCERAARIWKI--APVFWKGPSFEQESFKDW-WTFITEVKREKIHEDRLQ 30
++ H C A +W + + + + + W T IT +K E + R+
Sbjct: 1138 L-DSWKHSLIDCHMAKCVWALEREDITEHLCTIPVQDARGWLHTIITTLKHEDL--TRVL 1194
Query: 29 LTTYLLWW 6
+T + +W+
Sbjct: 1195 VTLWAIWY 1202
>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
gi|241936261|gb|EES09406.1| hypothetical protein
SORBIDRAFT_05g005061 [Sorghum bicolor]
Length = 753
Score = 121 bits (304), Expect = 6e-25
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPN-RVKGK----KRFCFDKRWL 1125
RLDR + NW FP A V H+ SDH I+L P+ R +G K F ++ W
Sbjct: 195 RLDRALASVNWCARFPLAAVQHLTAVKSDHCPILLSHVPDERNEGGGCQGKPFRYELMWE 254
Query: 1124 EKGEVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQ 945
+++++E+ W + + ++ K+ +L W + K ++ +LEQ
Sbjct: 255 TNERLSSLIEQIWKNGQHCNSVKDMKDKLFHLGEELKSWGGKTFGVVRKELRVQKKRLEQ 314
Query: 944 LNGEGAKRDWGEWHN--LKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRN 771
L + ++ E + + + YQ EE W+Q++R+ WL++GD NTKFFH +R
Sbjct: 315 LRADPSRNTVSEEEQKIVNRIILLNYQ-EEIMWRQRSRITWLHEGDSNTKFFHQRASRRR 373
Query: 770 RTNAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQW 591
N I++L R DG C + D + V DFY++LF S + +L IPR V + +
Sbjct: 374 IRNRIDKLNRPDGSECTNVDELHQMVVDFYRNLFESEGTSNMNLVLDHIPRKVTDDMNLF 433
Query: 590 LTRNVXXXXEIKKALFELHPHKAP 519
L E+K ALF++ P K+P
Sbjct: 434 LCA-PFNETEVKNALFQMFPTKSP 456
>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1357
Score = 121 bits (303), Expect = 7e-25
Identities = 85/264 (32%), Positives = 130/264 (49%), Gaps = 6/264 (2%)
Frame = -2
Query: 1292 ERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKR---FCFDKRWLE 1122
ERLDRF + +WL FP A + H R+ SDH I+L N ++R F F+ WL
Sbjct: 195 ERLDRFIVSRSWLHLFPEAFIDHQVRYCSDHAAIVLRCLGNEGMPRRRAGGFWFETFWLL 254
Query: 1121 KGEVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQL 942
VV AWN+ EG ++ + G + + +L W K + + K+I+A+ +L
Sbjct: 255 DDTCEEVVRGAWNAA-EGGRICEKLGAVAR---ELQGWSKKTFGSLRKKIEAVEKKLHAA 310
Query: 941 NGEGAKRD-WGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRT 765
GE D W L+++L + + E YW ++RV + DGD+NT +FH QR +
Sbjct: 311 QGEATSIDSWERCVGLERELDELHAKNEAYWYLRSRVAEVKDGDRNTSYFHHKASQRKKR 370
Query: 764 NAIERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVN--YAILSGIPRSVDESAKQW 591
N I + G + IE V +++ +FTSS P+ N +L + RSV +
Sbjct: 371 NLIHGIFDGGGRWQTEGEEIECVVERYFQEIFTSSEPSSNDFQEVLQHVKRSVTQEYNDI 430
Query: 590 LTRNVXXXXEIKKALFELHPHKAP 519
L + EI AL ++HP KAP
Sbjct: 431 LLK-PYSKEEIFAALSDMHPCKAP 453
Score = 82.4 bits (202), Expect = 4e-13
Identities = 50/168 (29%), Positives = 80/168 (47%)
Frame = -2
Query: 512 ICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGRNKAMWKR 333
I +IPLS +D+L W ++ G YSV++AY + N L H +W
Sbjct: 994 ILAIPLSTRCLQDELTWAYSKDGTYSVKTAYMLGKGGN-LDDFH-----------RVWNI 1041
Query: 332 TWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERAA 153
W L V K++HFLWR + LP + L R + CP C ++ET H+F++C +
Sbjct: 1042 LWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSL 1101
Query: 152 RIWKIAPVFWKGPSFEQESFKDWWTFITEVKREKIHEDRLQLTTYLLW 9
++W+ + P E E+ D T V+ ++ +Q Y+LW
Sbjct: 1102 KLWEELGSYILLPGIEDEAMCD-----TLVRWSQMDAKVVQKGCYILW 1144
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 120 bits (302), Expect = 9e-25
Identities = 76/259 (29%), Positives = 129/259 (49%)
Frame = -2
Query: 1295 EERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKG 1116
+ RLDR G +W FP +K ++ SDH ++ + +K K F FD+R EK
Sbjct: 135 KSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKE 194
Query: 1115 EVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNG 936
E+ A+V++ W + + ++ KI + R +I+W K + NSAK IK LE
Sbjct: 195 EIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALS 250
Query: 935 EGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAI 756
D ++ ++L AY+ EE +WKQ +RV+WLN GD+N +FHA R N +
Sbjct: 251 ADIP-DPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNL 309
Query: 755 ERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNV 576
+ G + I + +S +++++FT+S+ + + + + + L + +
Sbjct: 310 SVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIK-I 368
Query: 575 XXXXEIKKALFELHPHKAP 519
EIK+ALF + KAP
Sbjct: 369 SSLLEIKEALFSISADKAP 387
Score = 67.0 bits (162), Expect = 2e-08
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Frame = -2
Query: 560 IKKALFELHPHKAPAAICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVV----LQANEL 393
I+K L + I ++PL +D LVWL SG+Y+ ++ Y + A++L
Sbjct: 912 IRKHLPQYEDQIRKITINALPL-----QDSLVWLPVKSGEYTTKTGYALAKLNSFPASQL 966
Query: 392 RSDHP*ASANQGRNKAMW-KRTWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWC 216
+ W K WK+ K+KHFLW+ + LP L R ++ C
Sbjct: 967 DFN--------------WQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTC 1012
Query: 215 PFCGEKEETIMHIFFQCERAARIWKIAPVFW 123
CG+ E + +H+ C A ++W++APV +
Sbjct: 1013 KRCGQTESS-LHLMLLCPYAKKVWELAPVLF 1042
>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 120 bits (301), Expect = 1e-24
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 1/258 (0%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRV-KGKKRFCFDKRWLEKGE 1113
RLDR + W FP A ++H+ SSDH ++L+ + + K +++ W +
Sbjct: 150 RLDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESS 209
Query: 1112 VNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGE 933
+ V+++AW + + + I K+K + L+ W K+ N K+IK + +L +L
Sbjct: 210 LPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNI 269
Query: 932 GAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIE 753
G E H++KK+L + EE +WKQ++R+ WL +GD NT++FH R + N I+
Sbjct: 270 GLLDTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIK 329
Query: 752 RLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNVX 573
+L + DG + ++ F++ L+T +L+ + E L +
Sbjct: 330 KLKKNDGSTTMNKKEMKEISRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIK-PF 388
Query: 572 XXXEIKKALFELHPHKAP 519
EI ALF++ P KAP
Sbjct: 389 TDEEISDALFQIGPLKAP 406
Score = 73.9 bits (180), Expect = 1e-10
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 4/172 (2%)
Frame = -2
Query: 512 ICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGRNKAMWKR 333
+ I L + D W H SG ++V+SAYK+ + +S + +W R
Sbjct: 875 VLKIRLPNHQMDDFPAWHHEKSGLFTVKSAYKLAWNLSGKGVVQSSSSTATSGERKIWSR 934
Query: 332 TWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERAA 153
W +V+ K+K F+W+ + LPT R +++ CP CG K E H +C +A
Sbjct: 935 VWNAKVQAKVKIFIWKLAQDKLPTWENKRRRKIEMNGTCPVCGTKGENSYHATVECTKAR 994
Query: 152 RIWKIAPVFWKGPSFEQESF----KDWWTFITEVKREKIHEDRLQLTTYLLW 9
+ + W P +++F DW + + ++E++ Y+LW
Sbjct: 995 ALREALRAVWHLPG--EDNFLWTGPDWLLILL----DGVNEEQRTHIMYMLW 1040
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 120 bits (300), Expect = 2e-24
Identities = 72/259 (27%), Positives = 122/259 (47%)
Frame = -2
Query: 1295 EERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKG 1116
+ERLDR G W PN ++ H+ + SDH ++LD NP + + F F++ W
Sbjct: 798 KERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKTRLFRFEQMWTTHE 857
Query: 1115 EVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNG 936
E + V++++W G+ M + L W K N + ++ + +E+L+
Sbjct: 858 EYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQVADLLSDIEKLHQ 917
Query: 935 EGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAI 756
+ + L + K + +E YW Q++RV WL GD+N+ FFH +QR + N I
Sbjct: 918 SNPPDAHHQINILTDQVTKLWTQDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKI 977
Query: 755 ERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNV 576
RL G S + + D++ L+ S+ P +L + +V + L+ V
Sbjct: 978 VRLKDDHGNWLDSEADVALQFLDYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSSPV 1037
Query: 575 XXXXEIKKALFELHPHKAP 519
E+KKA+F+L KAP
Sbjct: 1038 -SLLEVKKAVFDLGATKAP 1055
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 120 bits (300), Expect = 2e-24
Identities = 76/258 (29%), Positives = 129/258 (50%)
Frame = -2
Query: 1292 ERLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGE 1113
+RLDR ++WL FP+ + ++ SDH +++ + RVK + +F FD R +
Sbjct: 90 QRLDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQFRFDNRLRDNDV 149
Query: 1112 VNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGE 933
VNA++++ W + + + + K+ Q R ++I W + +LNSA+ I+ LE+
Sbjct: 150 VNALIQETWTNAGDAS----VLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTA 205
Query: 932 GAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIE 753
L L AY+ EE +WKQ++RV WL+ GD+NT +FHA R N +
Sbjct: 206 DPPNPT-TIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLT 264
Query: 752 RLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNVX 573
+ +GV I +S +++ +FTS S + I V + +LTR +
Sbjct: 265 VMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTR-IP 323
Query: 572 XXXEIKKALFELHPHKAP 519
E+K A+F ++ KAP
Sbjct: 324 NDEEVKDAVFSINASKAP 341
Score = 79.0 bits (193), Expect = 4e-12
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = -2
Query: 512 ICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGRNKAMWKR 333
I +P DKL WL SG+Y+ +S Y + A S + + W+
Sbjct: 883 IKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVA----------SIPIPQTQFNWQS 932
Query: 332 T-WKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERA 156
WKL+ K+KH +W+ M LP +QL+ R + C CG E T H+FF CE A
Sbjct: 933 NLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCGAPEST-THLFFHCEFA 991
Query: 155 ARIWKIAPV 129
A++W++AP+
Sbjct: 992 AQVWELAPL 1000
>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 120 bits (300), Expect = 2e-24
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 1/258 (0%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRV-KGKKRFCFDKRWLEKGE 1113
RLDR + W FP A ++H+ SSDH ++L+ + + K +++ W +
Sbjct: 175 RLDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESS 234
Query: 1112 VNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGE 933
+ V+++AW + + + I K+K + L+ W K+ N K+IK + +L +L
Sbjct: 235 LPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNI 294
Query: 932 GAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIE 753
G E H++KK+L + EE +WKQ++R+ WL +GD NT++FH R + N I+
Sbjct: 295 GLLDTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIK 354
Query: 752 RLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNVX 573
+L + DG + ++ F++ L+T +L+ + E L +
Sbjct: 355 KLKKNDGSTTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIK-PF 413
Query: 572 XXXEIKKALFELHPHKAP 519
EI ALF++ P KAP
Sbjct: 414 TNEEISDALFQIGPLKAP 431
Score = 73.9 bits (180), Expect = 1e-10
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Frame = -2
Query: 512 ICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGRNKAMWKR 333
+ I L + D W H SG ++V+SAYK+ + +S + +W R
Sbjct: 900 VLKIRLPNHQMDDFPAWHHEKSGLFTVKSAYKLAWNLSGKGVVQSSSSTATSGERKIWSR 959
Query: 332 TWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERAA 153
W +V+ K+K F+W+ + LPT R +++ CP CG K E H +C +A
Sbjct: 960 VWNAKVQAKVKIFIWKLAQDKLPTWENKRRRKIEMNGTCPVCGTKGENSYHATVECTKAR 1019
Query: 152 RIWKIAPVFWKGPSFEQESF--KDWWTFITEVKREKIHEDRLQLTTYLLW 9
+ + W P ++ + DW + + ++E++ Y+LW
Sbjct: 1020 ALREALRAVWHLPGEDKFLWTGPDWLLILL----DGVNEEQRTHIMYMLW 1065
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis thaliana]
gi|7267156|emb|CAB77868.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1077
Score = 118 bits (296), Expect = 5e-24
Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 1/258 (0%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGEV 1110
RLDR S+W++ +P+ + ++ SDH ++ ++ + K K F +D+ + E+
Sbjct: 172 RLDRAMANSDWIIAYPSGRSEYLRFEGSDHRPLVTSFDHVQKKTKNIFRYDRTLKDNPEI 231
Query: 1109 NAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQ-LNGE 933
+ ++ + W S ++ ++ R L+ W K LNS K I ++ QLE+ L +
Sbjct: 232 SKLMNETWKS----NPSAKVDYRLHLCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDD 287
Query: 932 GAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIE 753
A +D + L ++L AY+ EET+WKQ++R WL GDKN+ FFHA R N I
Sbjct: 288 AATQDSVDL--LNQNLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHAATNSRRAINTIS 345
Query: 752 RLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNVX 573
+ + G I +SD+++ +FTS + + + L ++
Sbjct: 346 VIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLI-SLP 404
Query: 572 XXXEIKKALFELHPHKAP 519
EIK+A +HP KAP
Sbjct: 405 TVAEIKQACLSIHPDKAP 422
>gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
Length = 1494
Score = 118 bits (295), Expect = 6e-24
Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 2/259 (0%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLD--WNPNRVKGKKRFCFDKRWLEKG 1116
RLDR + W F A + H+ SDH ++L+ N + + K CF+ W
Sbjct: 441 RLDRAVASPVWRAMFDQANIMHLTTACSDHVPLLLEKGGNMQQRRRSKINCFEAVWERVK 500
Query: 1115 EVNAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNG 936
N++ ++W+ + ++ K+ + +L +W ++ N K I+ +LE++
Sbjct: 501 SFNSIEHESWDDGGLAKNLGDVRTKLAYTMENLKRWSRDKIGNIKKSIERCRRELEEMRM 560
Query: 935 EGAKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAI 756
G + + H LK L + EE +WKQ++R+ WL +GD+NT++FH R R N I
Sbjct: 561 RGREDSEPDVHRLKIFLQELLHREEIWWKQRSRITWLKEGDRNTRYFHLKASWRARKNLI 620
Query: 755 ERLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNV 576
++L R+DG++C + + F++ L+T +L+ + + LT+
Sbjct: 621 KKLRRSDGMMCSKEEELGEIARSFFRDLYTKDESLNPGELLNMFEPKITDEMNGMLTK-P 679
Query: 575 XXXXEIKKALFELHPHKAP 519
EI ALF++ P KAP
Sbjct: 680 FTDEEISDALFQIGPLKAP 698
Score = 68.9 bits (167), Expect = 4e-09
Identities = 36/133 (27%), Positives = 60/133 (45%)
Frame = -2
Query: 512 ICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGRNKAMWKR 333
I I + Q E+ D W + +G +SV+S Y++ S+ +S+ + +W
Sbjct: 1240 ILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSEQASSSSGGADGRKIWDN 1299
Query: 332 TWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIFFQCERAA 153
WK V+ K++ F W+ + L T R +++ CP CG+KEET H +C A
Sbjct: 1300 VWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFGTCPICGQKEETGFHATVECTLAK 1359
Query: 152 RIWKIAPVFWKGP 114
+ W P
Sbjct: 1360 ALRASLREHWTLP 1372
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 118 bits (295), Expect = 6e-24
Identities = 70/257 (27%), Positives = 127/257 (49%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGEV 1110
RLDR W+ FP AK +++ + SDH ++ + + + F +DKRW+++
Sbjct: 193 RLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGF 252
Query: 1109 NAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGEG 930
++ W+ T ++ KI R ++ +W + S +SA RI+ + +L+ +
Sbjct: 253 KDLLCNFWSQQSTKTNALMME-KIASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQ- 310
Query: 929 AKRDWGEWHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIER 750
D E LKK+L + Y +EE +W++K+R+ W+ +GD+NTK+FHA R N I++
Sbjct: 311 IPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQK 370
Query: 749 LVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNVXX 570
L+ +G S + + ++K LF S L + V + L +
Sbjct: 371 LIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNLLAPI-T 429
Query: 569 XXEIKKALFELHPHKAP 519
E+++A F ++PHK P
Sbjct: 430 KEEVQRATFSINPHKCP 446
Score = 81.3 bits (199), Expect = 8e-13
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 1/180 (0%)
Frame = -2
Query: 539 LHPHKAPAAICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQ 360
L P I ++ E RD+ W ++ SG YSV+S Y V+ + R++ Q
Sbjct: 987 LFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQ--EVLQ 1044
Query: 359 GRNKAMWKRTWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMH 180
++++ WKL V K+ HFLWRC+ N L L +R + C C ET+ H
Sbjct: 1045 PSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNH 1104
Query: 179 IFFQCERAARIWKIAPV-FWKGPSFEQESFKDWWTFITEVKREKIHEDRLQLTTYLLWWL 3
+ F+C A W I+P+ G + + F++ ++ K + D L ++LW L
Sbjct: 1105 LLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRL 1164
>gb|AAD22286.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1311
Score = 117 bits (293), Expect = 1e-23
Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 5/254 (1%)
Frame = -2
Query: 1265 SNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGEVNAVVEKAW 1086
S+W++ +P+ + ++ SDH ++ ++P K K F +D+R + EV +V +W
Sbjct: 516 SDWIMAYPSGRSEYLHFEGSDHRPLVTSFDPKTKKRKCIFRYDRRLKDNDEVKKLVLDSW 575
Query: 1085 NSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLE-QLNGEGAKRDWGE 909
NS + T + +I R +I W K LNS I + QLE +++ + ++ E
Sbjct: 576 NSNLSAT----VDHRIFACRSSIILWSKQHHLNSQVEIFTLREQLEDEISSNSSPQE--E 629
Query: 908 WHNLKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIERLVRADGV 729
++ L AYQ E+ +WKQ++R WL GDKN+ FFHA R N I + + G+
Sbjct: 630 IDSINTRLLSAYQREKAFWKQRSRNLWLALGDKNSGFFHAATKNRRAINNIAVIESSAGL 689
Query: 728 LCCSPDSIENEVSDFYKHLFT----SSSPAVNYAILSGIPRSVDESAKQWLTRNVXXXXE 561
D I + +SD+Y+ +FT VN A+ I +++E + E
Sbjct: 690 PVYEEDEIVSAISDYYQQIFTYVPGDRITTVNAALKPCITTAMNEKLIM-----LPSPAE 744
Query: 560 IKKALFELHPHKAP 519
IK A F +HP KAP
Sbjct: 745 IKLACFSIHPDKAP 758
>gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [Prunus persica]
Length = 1146
Score = 116 bits (291), Expect = 2e-23
Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 1/258 (0%)
Frame = -2
Query: 1289 RLDRFSGASNWLLDFPNAKVSHIARFSSDHHLIMLDWNPNRVKGKKRFCFDKRWLEKGEV 1110
+LDR WL +P+ V R SDH ++L + P + F F+ W ++ +
Sbjct: 101 KLDRGLINDQWLFLWPDLCVHVEPRVGSDHSPLVLYFAPKIQRRAGGFKFEAYWADEHDC 160
Query: 1109 NAVVEKAWNSVVEGTKMFQIQGKIKQSRVDLIQWCKNSDLNSAKRIKAINGQLEQLNGEG 930
++++ W + + G + + R +L +W K N+ RI + L L
Sbjct: 161 GTIIQRGWKNDIVGDSFAALSANLGVCREELQKWSKEKFPNNLSRINLLMKSLSNLQSGP 220
Query: 929 AKRDWGEWHN-LKKDLCKAYQDEETYWKQKARVKWLNDGDKNTKFFHACVVQRNRTNAIE 753
+ ++ + + ++ + EETYWKQ++R+ WL+ GD NTKFFH +QR + N IE
Sbjct: 221 LEENYRHQESAIWDEMSVLWSREETYWKQRSRLNWLSAGDANTKFFHTTTLQRRQRNKIE 280
Query: 752 RLVRADGVLCCSPDSIENEVSDFYKHLFTSSSPAVNYAILSGIPRSVDESAKQWLTRNVX 573
L++++G +I E F+ +LF S P IL+ + S+ E+ + LT +
Sbjct: 281 TLLKSEGNCISGDQAIREEFGIFFGNLFKSGGPRNWGGILNCVHASITEAQNKRLT-DPF 339
Query: 572 XXXEIKKALFELHPHKAP 519
E++ A+ +L KAP
Sbjct: 340 SMEEVRTAVKQLGSLKAP 357
Score = 74.3 bits (181), Expect = 1e-10
Identities = 43/151 (28%), Positives = 66/151 (43%)
Frame = -2
Query: 533 PHKAPAAICSIPLSQDEQRDKLVWLHNSSGKYSVQSAYKVVLQANELRSDHP*ASANQGR 354
P I S P+ RD LVW +G Y+V+S Y + + AS++
Sbjct: 854 PPSEAMLIRSTPIGSLATRDPLVWPAVKNGDYTVKSGYYHAINVSP-PDPCDRASSSHAV 912
Query: 353 NKAMWKRTWKLRVKGKLKHFLWRCIMNVLPTKVQLIHRGVKVIPWCPFCGEKEETIMHIF 174
N +WK W+ + K+++F+WR + N +PT L R + P C CG ET+ H+
Sbjct: 913 NSDVWKVIWRAHITPKIRNFMWRALTNSIPTCANLFGRKLARSPTCRLCGLFPETVEHLL 972
Query: 173 FQCERAARIWKIAPVFWKGPSFEQESFKDWW 81
C +W P F P+ + D W
Sbjct: 973 LLCSWTRAVWFGCP-FGYAPNLASITTLDSW 1002