BLASTX nr result
ID: Rehmannia22_contig00028047
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00028047
(358 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 118 7e-25
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 111 9e-23
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 110 1e-22
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 110 1e-22
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 110 3e-22
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 110 3e-22
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 110 3e-22
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 109 4e-22
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 108 7e-22
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 84 2e-14
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 76 4e-12
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 58 2e-06
ref|NP_148778.1| RNA-dependent RNA polymerase [Cactus virus X] g... 57 3e-06
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 118 bits (296), Expect = 7e-25
Identities = 60/118 (50%), Positives = 75/118 (63%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
HT LKV + LS QL A+H LG +R GGPLLP++T E ++A+
Sbjct: 466 HTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPA 525
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
+ D P +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI+D ++LP
Sbjct: 526 SSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELP 583
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 111 bits (278), Expect = 9e-23
Identities = 66/123 (53%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPK-----ITPDEQDSEXXXXXXXXXXPT 192
H SL + L QL ALHELG+TR GGPLLPK T + P
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPR 522
Query: 191 KANATLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVR 12
K TL+ P DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R
Sbjct: 523 KTTQTLD-------LPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTR 575
Query: 11 DLP 3
+LP
Sbjct: 576 ELP 578
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 110 bits (276), Expect = 1e-22
Identities = 61/118 (51%), Positives = 72/118 (61%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL + + L QL ALHELG+ R GGPLLPK +E
Sbjct: 463 HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP- 521
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R+LP
Sbjct: 522 -HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 110 bits (276), Expect = 1e-22
Identities = 61/118 (51%), Positives = 72/118 (61%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL + + L QL ALHELG+ R GGPLLPK +E
Sbjct: 463 HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP- 521
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R+LP
Sbjct: 522 -HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 110 bits (274), Expect = 3e-22
Identities = 61/118 (51%), Positives = 71/118 (60%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL + L QL ALHELG+ R GGPLLPK +E
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP- 521
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R+LP
Sbjct: 522 -HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 110 bits (274), Expect = 3e-22
Identities = 61/118 (51%), Positives = 71/118 (60%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL + L QL ALHELG+ R GGPLLPK +E
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP- 521
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R+LP
Sbjct: 522 -HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 110 bits (274), Expect = 3e-22
Identities = 61/118 (51%), Positives = 71/118 (60%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL + L QL ALHELG+ R GGPLLPK +E
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP- 521
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R+LP
Sbjct: 522 -HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 109 bits (272), Expect = 4e-22
Identities = 63/119 (52%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL++ LS QL ALH+LG+ R GGPLLP+ PD S T A
Sbjct: 463 HQSLRLDCPTLSEHQLWALHKLGNARCGGPLLPQ-RPDT--STVVEPCPDLPPETHAAPE 519
Query: 176 LNQGD-HADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
+Q + A P DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPI+D ++LP
Sbjct: 520 PSQRNTQAPNLPSPQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELP 578
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 108 bits (270), Expect = 7e-22
Identities = 60/118 (50%), Positives = 71/118 (60%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
H SL + + L QL ALHELG+ R G PLLPK +E
Sbjct: 463 HQSLSLKCSTLPEHQLWALHELGNARCGAPLLPKGPAKLTRAEPCPDLPAEPQAVPEPP- 521
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI+D R+LP
Sbjct: 522 -HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 84.0 bits (206), Expect = 2e-14
Identities = 52/118 (44%), Positives = 66/118 (55%)
Frame = -3
Query: 356 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANAT 177
HTSLKV LS EQL ALHELG++R GGP+LPK + + T ++
Sbjct: 468 HTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSD 512
Query: 176 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
L + H Q + P + K +GFEALEIQTDPSTG+ IMPI+D R+LP
Sbjct: 513 LLRRRHPRQQRSTNPPMG----SLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELP 566
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 76.3 bits (186), Expect = 4e-12
Identities = 51/114 (44%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Frame = -3
Query: 329 DLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXP---TKANATLNQGDH 159
+LS +QL ALH LGS R G LP +P + E TK T N
Sbjct: 447 NLSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVS 504
Query: 158 ADQAPVNS--DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
A+ DP TLPW AWLP L ALGFEA EIQTDP IMPI+D++ LP
Sbjct: 505 ANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLP 558
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 57.8 bits (138), Expect = 2e-06
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = -3
Query: 140 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVR 12
N+ A LPW W+PKLNALGFEA E Q P T +IMPI+D++
Sbjct: 612 NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDIK 654
>ref|NP_148778.1| RNA-dependent RNA polymerase [Cactus virus X]
gi|14582654|gb|AAK69579.1|AF308158_1 RNA-dependent RNA
polymerase [Cactus virus X]
Length = 1543
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/117 (29%), Positives = 58/117 (49%)
Frame = -3
Query: 353 TSLKVGHADLSTEQLRALHELGSTRLGGPLLPKITPDEQDSEXXXXXXXXXXPTKANATL 174
T+L +GH +L T ++ ++ L GP++ + Q++ + + T
Sbjct: 645 TTLSIGHCELLTRD-KSNKKIHKQLLSGPIIYTMPSGFQETHQHSVRSLQK--NRLSITF 701
Query: 173 NQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPISDVRDLP 3
H +Q TLPW WLP L+A GF+ + Q +P+ G +I+PISD++ LP
Sbjct: 702 RTSVHCNQED------TLPWHKWLPILSAAGFKGNQRQVNPNGGSLILPISDIKKLP 752