BLASTX nr result
ID: Rehmannia22_contig00028046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00028046
(820 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 330 3e-88
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 1e-87
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 2e-87
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 327 3e-87
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 327 3e-87
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 327 3e-87
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 327 3e-87
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 325 9e-87
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 325 9e-87
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 300 5e-79
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 213 9e-53
gb|AAB71853.1| RNA replicase [Cymbidium mosaic virus] 100 5e-19
gb|AHB59866.1| replicase [Narcissus mosaic virus] 100 8e-19
ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus viru... 99 2e-18
gb|AEH03003.1| RNA dependent RNA polymerase [Cymbidium mosaic vi... 99 2e-18
ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus ... 98 3e-18
gb|ABO41877.1| RNA dependent RNA polymerase [Cymbidium mosaic vi... 98 3e-18
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z... 98 4e-18
gb|AGO03686.1| RNA dependent RNA polymerase, partial [Actinidia ... 97 5e-18
ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp... 96 1e-17
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 330 bits (847), Expect = 3e-88
Identities = 175/273 (64%), Positives = 193/273 (70%), Gaps = 1/273 (0%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 ITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F +LE AE H SL + L QL ALHELGNTR
Sbjct: 434 ETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHELGNTR 488
Query: 543 LGGPLLPKITXXXXXXXXXXXXXXXXXXTKAN-TTSNQGDHTDEAPVNSDPATLPWVAWL 719
GGPLLPK AN + T + P DP TLPWVAWL
Sbjct: 489 CGGPLLPK---GPAKLTTVEPCPDLPAENSANPEPPRKTTQTLDLPHPEDPTTLPWVAWL 545
Query: 720 PKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
PKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 546 PKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (841), Expect = 1e-87
Identities = 172/276 (62%), Positives = 195/276 (70%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F + +L +E H SL + + L QL ALHELGN R
Sbjct: 434 ETTQSFQAF-----CQATATVEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNAR 488
Query: 543 LGGPLLP----KITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWV 710
GGPLLP K+T T S+ + P DP+TLPWV
Sbjct: 489 CGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSS------DLPHPQDPSTLPWV 542
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (840), Expect = 2e-87
Identities = 172/276 (62%), Positives = 195/276 (70%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F + +L +E H SL + + L QL ALHELGN R
Sbjct: 434 ETTQSFQAF-----CQATATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNAR 488
Query: 543 LGGPLLP----KITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWV 710
GGPLLP K+T T S+ + P DP+TLPWV
Sbjct: 489 CGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSS------DLPHPQDPSTLPWV 542
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 327 bits (838), Expect = 3e-87
Identities = 169/272 (62%), Positives = 190/272 (69%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVNPDDA
Sbjct: 374 ATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T +F+ F + +LE AE H SL++ LS QL ALH+LGN R
Sbjct: 434 ETTHSFQAF-----CQAAAAVETTLEQQAETPDEHQSLRLDCPTLSEHQLWALHKLGNAR 488
Query: 543 LGGPLLPKITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWVAWLP 722
GGPLLP+ A S + P DP TLPWVAWLP
Sbjct: 489 CGGPLLPQ--RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPWVAWLP 546
Query: 723 KLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
KLNALGFEALEIQ DPSTG +IMPI D ++LP
Sbjct: 547 KLNALGFEALEIQNDPSTGNMIMPITDTKELP 578
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 327 bits (838), Expect = 3e-87
Identities = 172/276 (62%), Positives = 194/276 (70%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F + +L +E H SL + L QL ALHELGN R
Sbjct: 434 ETTQSFQAF-----CQATATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNAR 488
Query: 543 LGGPLLP----KITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWV 710
GGPLLP K+T T S+ + P DP+TLPWV
Sbjct: 489 CGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSS------DLPHPQDPSTLPWV 542
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 327 bits (838), Expect = 3e-87
Identities = 172/276 (62%), Positives = 194/276 (70%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F + +L +E H SL + L QL ALHELGN R
Sbjct: 434 ETTQSFQAF-----CQATATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNAR 488
Query: 543 LGGPLLP----KITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWV 710
GGPLLP K+T T S+ + P DP+TLPWV
Sbjct: 489 CGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSS------DLPHPQDPSTLPWV 542
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 327 bits (838), Expect = 3e-87
Identities = 172/276 (62%), Positives = 194/276 (70%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F + +L +E H SL + L QL ALHELGN R
Sbjct: 434 ETTQSFQAF-----CQATATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNAR 488
Query: 543 LGGPLLP----KITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWV 710
GGPLLP K+T T S+ + P DP+TLPWV
Sbjct: 489 CGGPLLPKGPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSS------DLPHPQDPSTLPWV 542
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 325 bits (834), Expect = 9e-87
Identities = 172/273 (63%), Positives = 192/273 (70%), Gaps = 1/273 (0%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRAD 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVNPDDA
Sbjct: 374 MQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T +FREF + + LE S E+ +HTSLKV LS EQL ALHELGN+R
Sbjct: 434 ETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHELGNSR 493
Query: 543 LGGPLLPKITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWVAWL- 719
GGP+LPK +N T D +T P + L
Sbjct: 494 CGGPMLPK--------------------RSSNHTHTSSDLLRRRHPRQQRSTNPPMGSLA 533
Query: 720 PKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
K +GFEALEIQTDPSTG+ IMPI D R+LP
Sbjct: 534 AKAKRIGFEALEIQTDPSTGQPIMPITDTRELP 566
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 325 bits (834), Expect = 9e-87
Identities = 171/276 (61%), Positives = 194/276 (70%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS
Sbjct: 314 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSG 373
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
+ ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA
Sbjct: 374 LTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDA 433
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
+T ++F+ F + +L +E H SL + + L QL ALHELGN R
Sbjct: 434 ETTQSFQAF-----CQATATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNAR 488
Query: 543 LGGPLLP----KITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWV 710
G PLLP K+T T S+ + P DP+TLPWV
Sbjct: 489 CGAPLLPKGPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSS------DLPHPQDPSTLPWV 542
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 300 bits (767), Expect = 5e-79
Identities = 156/267 (58%), Positives = 182/267 (68%)
Frame = +3
Query: 18 RQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVL 197
+QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L + I R+L
Sbjct: 318 QQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRIL 376
Query: 198 QFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRA 377
QFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNP+DAD
Sbjct: 377 QFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSR 436
Query: 378 FREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLGGPL 557
F++F + LE SAE+ HT LKV + LS QL A+H LG++R GGPL
Sbjct: 437 FQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGHSRCGGPL 496
Query: 558 LPKITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSDPATLPWVAWLPKLNAL 737
LP++T ++A+ S+ D P +P TLPWVAWLPKLNAL
Sbjct: 497 LPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWVAWLPKLNAL 556
Query: 738 GFEALEIQTDPSTGEVIMPIADVRDLP 818
GFEALE+Q DPSTGE+IMPI D ++LP
Sbjct: 557 GFEALEVQHDPSTGEMIMPITDTQELP 583
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 213 bits (541), Expect = 9e-53
Identities = 128/276 (46%), Positives = 153/276 (55%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R +
Sbjct: 313 LWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVN 372
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
Q +++FF+G P KLIKAL WQP+ LEF V TV R PPGF +P +P PVN DA
Sbjct: 373 WQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDA 432
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTR 542
T A ++ SL + +LS +QL ALH LG+ R
Sbjct: 433 LTTAA---------------------------CANQSLPLD--NLSEDQLEALHVLGSLR 463
Query: 543 LGGPLLPK-ITXXXXXXXXXXXXXXXXXXTKANTTSN---QGDHTDEAPVNSDPATLPWV 710
G LP TK T N + P+ DP TLPW
Sbjct: 464 TDGESLPSPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPL-PDPDTLPWK 522
Query: 711 AWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
AWLP L ALGFEA EIQTDP IMPI D++ LP
Sbjct: 523 AWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLP 558
>gb|AAB71853.1| RNA replicase [Cymbidium mosaic virus]
Length = 1417
Score = 100 bits (250), Expect = 5e-19
Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 13/285 (4%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
++AK RQLI T EL + P E+T LVNY F + L S + ++D+LS N+ Q P+++
Sbjct: 317 LYAKVRQLIPTSELDLFDPVEVTHLVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNK 376
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
I+ + Q F G F +L+KALDWQ + PV T++TR N A
Sbjct: 377 IRELAQLFTGADQFNQLLKALDWQTFSYSMPVETIHTR---------------AANYQVA 421
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEG----SAENLASHTSLKVGHADLSTE----QLRA 518
T+R R+ + +G + +S + ++ T+ L
Sbjct: 422 KTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQDPSSPEAEDSEDDTDSVDFNLSP 481
Query: 519 LHELG---NTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSD 689
HEL ++ G + T + A+T + G T EA
Sbjct: 482 THELPPNFDSLHKGKSIIFDTDNPSTSTAPAVTFAVGINSSASTNISFGSFTPEAEATPP 541
Query: 690 P--ATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
P LPW W+P L GF+ P TGE+I PI +++ +P
Sbjct: 542 PPMEKLPWDLWIPLLEQHGFKGKSKLYKP-TGELICPITEIKTVP 585
>gb|AHB59866.1| replicase [Narcissus mosaic virus]
Length = 1630
Score = 100 bits (248), Expect = 8e-19
Identities = 49/105 (46%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
I+AK RQ+I T EL+ Y P EI L NYF F ++LDS TC+ED+LS N+ RL RPLR+
Sbjct: 318 IYAKIRQIIPTSELELYDPDEIVHLANYFSFVSNLDSITCYEDLLSSNIWTRLTRPLRTA 377
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVRTVNTRLR 302
+++ ++FF+G+ F KL+ AL WQP + ++F V+ R+R
Sbjct: 378 VRKFVEFFKGKQDFDKLLIALKWQPFSYSLEPVDFTAYFVSRRVR 422
>ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus virus 3]
gi|169219513|dbj|BAG12158.1| RNA dependent RNA
polymerase [Asparagus virus 3]
Length = 1614
Score = 99.0 bits (245), Expect = 2e-18
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
I+AKFRQ+IST+EL+ Y+P EI L NYF F A LDS TC+ED+L +L +RL P+R+
Sbjct: 318 IYAKFRQIISTQELELYEPDEIVHLCNYFNFVAHLDSITCYEDLLGNSLWRRLTIPIRTT 377
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVR 281
I + L FFRG+ SF KL+ AL W+ + ++F VR
Sbjct: 378 ITKALDFFRGQQSFSKLLGALKWESFSYSLEPIDFTVR 415
>gb|AEH03003.1| RNA dependent RNA polymerase [Cymbidium mosaic virus]
Length = 1416
Score = 98.6 bits (244), Expect = 2e-18
Identities = 79/285 (27%), Positives = 118/285 (41%), Gaps = 13/285 (4%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
++AK RQLI T EL + P E+T LVNY F + L S + ++D+LS N+ Q P+ +
Sbjct: 317 LYAKVRQLIPTSELDLFDPVEVTHLVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIENK 376
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
I+ ++Q F G F +L+KALDWQ + PV T++TR N A
Sbjct: 377 IRELVQLFTGADQFNQLLKALDWQTFSYSMPVETIHTR---------------AANYQVA 421
Query: 363 DTMRAFREFXXXXXXXXXXXIADSLEG--------SAENLASHTSLKVGHADLSTEQLRA 518
+T+R R+ + +G + +S T D L
Sbjct: 422 NTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQDPSSSETEDSEDDTDSVDFNLPP 481
Query: 519 LHELG---NTRLGGPLLPKITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEAPVNSD 689
H+L + G + T + A+T G T EA
Sbjct: 482 THDLPPNFDPLDKGKSIIVDTDSPSTSTAPAITFTAGINSSASTNILFGSFTPEADAPPL 541
Query: 690 P--ATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
P LPW W+P L GF+ P TGE+I PI +++ +P
Sbjct: 542 PPMEKLPWDLWIPLLEQHGFKGKSKLYKP-TGELICPITEIKTVP 585
>ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus X]
gi|189458580|emb|CAN88808.1| RNA-dependent RNA
polymerase [Lettuce virus X]
Length = 1708
Score = 98.2 bits (243), Expect = 3e-18
Identities = 45/99 (45%), Positives = 66/99 (66%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
I+AK Q++ T EL+ Y+P E+ L NYF F ++L S+TC+ED+LSG LI+RL RP+R+
Sbjct: 318 IYAKIHQVLPTNELELYEPDELVHLANYFFFLSNLKSYTCYEDLLSGGLIKRLTRPVRTA 377
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRL 299
+ R ++FF GR F KL+ AL W+P T T++
Sbjct: 378 VTRFIEFFAGRNDFNKLMDALKWEPFTYTLEPAVYKTKV 416
>gb|ABO41877.1| RNA dependent RNA polymerase [Cymbidium mosaic virus]
Length = 1417
Score = 98.2 bits (243), Expect = 3e-18
Identities = 77/275 (28%), Positives = 115/275 (41%), Gaps = 3/275 (1%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
++AK RQLI T EL + P E+T LVNY F + L S + ++D+LS N+ Q P+++
Sbjct: 317 LYAKVRQLIPTSELDLFDPVEVTHLVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNK 376
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDA 362
I+ + Q F G F +L+KALDWQ + PV T++TR + D+
Sbjct: 377 IRELAQLFTGADQFNQLLKALDWQTFSYSMPVETIHTRAANYQ-VAKTLRMCRDLPCDEY 435
Query: 363 DTMR-AFREFXXXXXXXXXXXIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNT 539
D ++ R+ D AE+ T DL+ L +
Sbjct: 436 DRVKDVLRQLPDGVTLFEENDKQDPSSSEAEDSEDDTD----SIDLNLPPTHGLPSNFDP 491
Query: 540 RLGGPLLPKITXXXXXXXXXXXXXXXXXXTKANTTSNQGDHTDEA--PVNSDPATLPWVA 713
G + T + A+T G T EA P LPW
Sbjct: 492 LDKGKSIIVDTDSPSTSAAPAVTFAAGINSSASTNILFGSFTPEAEGPPPPPMEKLPWDL 551
Query: 714 WLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 818
W+P L GF+ P TGE+I PI +++ +P
Sbjct: 552 WIPLLEQHGFKGKSKLYKP-TGELICPITEIKTVP 585
>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
Length = 1643
Score = 97.8 bits (242), Expect = 4e-18
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
I+AK RQ+I T EL+ Y P EI L NYF F ++LDS TC+ED+LS ++ RL RPLR+
Sbjct: 318 IYAKIRQIIPTSELELYDPDEIVHLANYFFFVSNLDSTTCYEDLLSSDIWMRLTRPLRTA 377
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVRTVNTRLR 302
+++ ++FF+G+ F KL+ AL WQP + ++F V+ R+R
Sbjct: 378 VRKFVEFFKGKQDFDKLLIALKWQPFSYSLEPVDFTAYFVSRRVR 422
>gb|AGO03686.1| RNA dependent RNA polymerase, partial [Actinidia virus X]
Length = 1607
Score = 97.4 bits (241), Expect = 5e-18
Identities = 45/87 (51%), Positives = 65/87 (74%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
I+AK RQLI T+EL+ Y+P EI L NYF F A LDS TCFED+LS N+ +RL P+R++
Sbjct: 323 IYAKIRQLIPTQELELYEPDEIVHLANYFYFMAHLDSITCFEDMLSNNVWRRLTLPIRTN 382
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPIT 263
+++++FF+G+ F KL++AL W+ T
Sbjct: 383 FRQLVEFFKGKSDFDKLLQALKWETFT 409
>ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp|P15095.1|RDRP_NMV
RecName: Full=RNA replication protein; AltName: Full=186
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222108|dbj|BAA02891.1| 186K
protein [Narcissus mosaic virus]
Length = 1643
Score = 96.3 bits (238), Expect = 1e-17
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 5/105 (4%)
Frame = +3
Query: 3 IWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSD 182
I+AK RQ+I T EL+ Y P EI L NYF F +SLDS TC+ED+LS ++ RL RPLR+
Sbjct: 318 IYAKIRQIIPTSELELYDPDEIVHLANYFFFVSSLDSITCYEDLLSSDIWMRLTRPLRTA 377
Query: 183 IQRVLQFFRGRPSFVKLIKALDWQPIT-----LEFPVRTVNTRLR 302
+++ ++ F+G+ F KL+ AL WQP + ++F V+ R+R
Sbjct: 378 VRKFVELFKGKQDFDKLLIALKWQPFSYSLEPVDFTAYFVSRRVR 422