BLASTX nr result
ID: Rehmannia22_contig00027559
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00027559
(696 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein A... 50 2e-08
ref|XP_006482369.1| PREDICTED: putative ribonuclease H protein A... 48 2e-08
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 62 1e-07
gb|EXB89969.1| hypothetical protein L484_023622 [Morus notabilis] 41 2e-06
gb|EOY13397.1| Uncharacterized protein TCM_031959 [Theobroma cacao] 39 3e-06
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 49 6e-06
>ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 335
Score = 50.4 bits (119), Expect(2) = 2e-08
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 101 CRKGV*HHGYCEMCGEDVETVVHPLFQCPRALKV*KISPV--CWNNTNETTFFVKGWWSN 274
C++G+ +C+ CG VE ++H L C A KV + SPV + + + F
Sbjct: 48 CKRGIVQEAHCKRCGNKVENILHVLVTCKAAKKVWQRSPVADAVHKIDSSNLF-----GE 102
Query: 275 ICSLDKSQIS*DRIQLPVYMLCWLWKIRNLWVFQKIRISESDIVEKA 415
+ L +S +S D +L + +L +W RN +VF+ ++I V KA
Sbjct: 103 LTKLQRS-LSNDDFELLLVLLWIIWYARNKFVFEGMKIDPGISVAKA 148
Score = 34.7 bits (78), Expect(2) = 2e-08
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 10 WKRCWGLEIKGNVKHFLWRSINNILPTADQL 102
W W L + +K F+W++ N+LPTA+ L
Sbjct: 17 WSIIWKLSLPEKIKIFVWKATKNLLPTAENL 47
>ref|XP_006482369.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 494
Score = 47.8 bits (112), Expect(2) = 2e-08
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Frame = +2
Query: 104 RKGV*HHGYCEMCGEDVETVVHPLFQCPRALKV*KISPVCWNNTNETTFFVKGWWSNICS 283
++ + H YC+ CG VE +H L C A KV ++SP+ ++F G +
Sbjct: 240 KRKIVHEAYCKRCGNRVENTLHALITCKAAKKVWQLSPMA------SSFQEMGNPDILGD 293
Query: 284 LDKSQIS*DRIQLPVYMLCWLWKIRNLWVFQKIRI------SESDIVEKALKEWMEFQSI 445
L ++S +++ + +L +W RN VF+ +++ ++++ + +A + +F I
Sbjct: 294 LGGKKLSRADMEMLMTILWVIWYDRNKLVFEDLKLDPRLSMAKAEAINEAFRR-TQFPEI 352
Query: 446 CGKG--------VRFAEPQE-TSLHTNITTPSENSLVGSHFLAISAAAFSSGKFCLGGWI 598
+G V PQ L+ + TT S S G + A S C+ I
Sbjct: 353 TNEGKLQKLKQTVWTPPPQGWLKLNVDATTDSNKSCAG-----LGAIIRDSTGKCMAAGI 407
Query: 599 EGVQ----DSFVQAGATSW 643
+ V+ S V+A AT W
Sbjct: 408 KTVKFSGVVSRVEAEATEW 426
Score = 37.0 bits (84), Expect(2) = 2e-08
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 4 TTWKRCWGLEIKGNVKHFLWRSINNILPTADQL 102
+ W W L + +K F+WR+ N+LPTA+ L
Sbjct: 206 SNWSVIWKLTLPAKIKIFIWRAAKNLLPTAENL 238
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 62.4 bits (150), Expect = 1e-07
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Frame = +2
Query: 95 TNCRK-GV*HHGYCEMCGEDVETVVHPLFQCPRALKV*KISPVCWNNTNETTFFVKGWWS 271
TN RK G+ G C CGE ET H ++ C + + ISP+ + N + W
Sbjct: 1079 TNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVE 1138
Query: 272 NICSLDKSQIS*DRIQLPVYMLCW-LWKIRNLWVFQKIRISESDIVEKALKEWMEFQSIC 448
++ K +M+CW +W RN WVF+K +++ ++VE+A++ MEF+ C
Sbjct: 1139 SLLDTHKDT----EWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEFEEEC 1194
Query: 449 GKGVRFAEPQET-SLHTN-ITTPSENSLVGSHFLAISAAAFSSGKFCLGGWIEGVQDSFV 622
P ET + H N + P VG L + AA F +GG + + +
Sbjct: 1195 A----HTSPVETLNTHENGWSVPP----VGMVKLNVDAAVFKHVGIGMGGVVRDAEGDVL 1246
Query: 623 QA 628
A
Sbjct: 1247 LA 1248
>gb|EXB89969.1| hypothetical protein L484_023622 [Morus notabilis]
Length = 756
Score = 40.8 bits (94), Expect(2) = 2e-06
Identities = 25/120 (20%), Positives = 56/120 (46%)
Frame = +2
Query: 104 RKGV*HHGYCEMCGEDVETVVHPLFQCPRALKV*KISPVCWNNTNETTFFVKGWWSNICS 283
R+G+ C+ GE+ E++ H L+ C ++V ++S W+ G + +C
Sbjct: 51 RRGINCATRCQHYGEEDESIWHALWMCSTVIQVWEVSAF-WHKLKPLK---AGGFEALCV 106
Query: 284 LDKSQIS*DRIQLPVYMLCWLWKIRNLWVFQKIRISESDIVEKALKEWMEFQSICGKGVR 463
+ + + + +++ + +W RN ++ ++ +DI+ K + EFQS C +
Sbjct: 107 MFSNVATEEDLEIFCVLAWTIWAARNQFIHHRLYREPTDILGKTGRIIAEFQSCCNPAAK 166
Score = 37.7 bits (86), Expect(2) = 2e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 10 WKRCWGLEIKGNVKHFLWRSINNILPT 90
W++ W L I +K+F+WR+I+ LPT
Sbjct: 19 WRKLWDLHIPNKIKNFMWRTISGFLPT 45
>gb|EOY13397.1| Uncharacterized protein TCM_031959 [Theobroma cacao]
Length = 1217
Score = 38.9 bits (89), Expect(2) = 3e-06
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 10 WKRCWGLEIKGNVKHFLWRSINNILPTADQL 102
WKR W LE+ V FLW+++N ILPT L
Sbjct: 891 WKRIWHLELPRKVILFLWKTLNGILPTRQAL 921
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = +2
Query: 131 CEMCGEDVETVVHPLFQCPRALKV*KISPVCWNNTNETTFF--VKGWWSNICSL-DKSQI 301
C C ++ET H L CP A V S W TN F V+ W I + + +I
Sbjct: 932 CPSCDNELETDFHCLCCCPLARAVWHFSK--WGFTNIEVLFSSVQDWIFYIFQMMENEEI 989
Query: 302 S*DRIQLPVYMLCW-LWKIRNLWVFQKIRISESDIVEKALKEWMEFQSICGKGVR 463
S + + W LWK+RNL +FQ ++E A +++ + KGVR
Sbjct: 990 S------KIGCILWALWKVRNLKIFQGKSYEPLQVIELAGNLLEQYRLV--KGVR 1036
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 48.5 bits (114), Expect(2) = 6e-06
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Frame = +2
Query: 131 CEMCGEDVETVVHPLFQCPRALKV*KISPVCWNNTNETTFFVKGWWSNICSLDKSQIS*D 310
C C E++ET+ H LFQCP A +V +S + T F +SNI + ++
Sbjct: 1036 CLFCKEEIETINHLLFQCPFARQVWALSLI----QAPATGFGTSIFSNINHVIQNS---Q 1088
Query: 311 RIQLPVYM------LCW-LWKIRNLWVFQKIRISESDIVEKALKE---WMEFQSICGKGV 460
+P +M L W +WK RN +FQ ++ S+IV KA +E W+ Q GV
Sbjct: 1089 NFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGV 1148
Query: 461 RFAE 472
+E
Sbjct: 1149 SPSE 1152
Score = 28.1 bits (61), Expect(2) = 6e-06
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Frame = +1
Query: 16 RCWGLEIKGNVKHFLWRSINNILPTADQLQ-------EGCL 117
+ W LE +K F+W+++ L D+L+ +GCL
Sbjct: 997 KVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCL 1037