BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00026201
         (370 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Mor...   108   6e-22
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s...   105   5e-21
gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [The...   103   2e-20
emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]   102   4e-20
ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s...   102   5e-20
ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citr...   102   7e-20
ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Popu...   100   2e-19
ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III s...   100   3e-19
gb|AFK37258.1| unknown [Lotus japonicus]                               95   8e-18
ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Caps...    93   4e-17
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]         93   4e-17
gb|AFK40316.1| unknown [Lotus japonicus]                               93   4e-17
ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabi...    93   4e-17
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop...    93   4e-17
ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258...    92   9e-17
ref|XP_002525535.1| conserved hypothetical protein [Ricinus comm...    92   9e-17
ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587...    91   2e-16
ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutr...    90   3e-16
ref|XP_002884101.1| predicted protein [Arabidopsis lyrata subsp....    90   3e-16
ref|XP_002866524.1| hypothetical protein ARALYDRAFT_496480 [Arab...    90   3e-16

>gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Morus notabilis]
          Length = 163

 Score =  108 bits (271), Expect = 6e-22
 Identities = 47/72 (65%), Positives = 66/72 (91%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           +S+GA KDPT V+A V+PSE+KV+DYL +TAAC+QTKE +++F+++CKKYDLAKAE+LN+
Sbjct: 21  KSKGASKDPTRVLADVAPSEYKVYDYLVETAACDQTKENVNEFLEKCKKYDLAKAEVLNI 80

Query: 183 VNIRPSSAVEVY 218
           +NIR S+AVE+Y
Sbjct: 81  INIRASTAVEIY 92


>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
           vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
           product [Vitis vinifera]
          Length = 156

 Score =  105 bits (263), Expect = 5e-21
 Identities = 48/71 (67%), Positives = 63/71 (88%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           RSRGA KDPT VIA ++ SEFKV+DYL ++AACNQT+E I++ +++CKKYDLAKAEILN+
Sbjct: 21  RSRGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNI 80

Query: 183 VNIRPSSAVEV 215
           +NIRP+S VE+
Sbjct: 81  INIRPASPVEI 91


>gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [Theobroma cacao]
          Length = 245

 Score =  103 bits (257), Expect = 2e-20
 Identities = 46/71 (64%), Positives = 60/71 (84%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           RSRGA KDPT VI  ++PSEFKV+DYL ++AACNQTKE I+ F++ CK Y LAKAE+LN+
Sbjct: 96  RSRGASKDPTRVIVPIAPSEFKVYDYLVESAACNQTKEHINDFLERCKNYKLAKAEVLNI 155

Query: 183 VNIRPSSAVEV 215
           +N+RPS+ VE+
Sbjct: 156 INLRPSALVEI 166


>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
          Length = 388

 Score =  102 bits (255), Expect = 4e-20
 Identities = 47/71 (66%), Positives = 62/71 (87%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           RSRGA KD T VIA ++ SEFKV+DYL ++AACNQT+E I++ +++CKKYDLAKAEILN+
Sbjct: 42  RSRGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNI 101

Query: 183 VNIRPSSAVEV 215
           +NIRP+S VE+
Sbjct: 102 INIRPASPVEI 112


>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like
           [Cucumis sativus] gi|449523065|ref|XP_004168545.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           rpc9-like [Cucumis sativus]
          Length = 160

 Score =  102 bits (254), Expect = 5e-20
 Identities = 46/72 (63%), Positives = 61/72 (84%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           RS+GA KDPT V+A V PSE+KVFDYL QT+ACNQT+E I  F ++ K+YDLAKAEILN+
Sbjct: 21  RSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAIINFAEKSKEYDLAKAEILNI 80

Query: 183 VNIRPSSAVEVY 218
           +N+RP++ VE++
Sbjct: 81  INLRPTTPVELF 92


>ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citrus clementina]
           gi|567853814|ref|XP_006420027.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521899|gb|ESR33266.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521900|gb|ESR33267.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
          Length = 163

 Score =  102 bits (253), Expect = 7e-20
 Identities = 47/71 (66%), Positives = 62/71 (87%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           RS+GA KDPT V+  V+PSEFKV+DYL ++AACNQT+ II++F+++ KK+ LAKAEILN+
Sbjct: 21  RSKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNI 80

Query: 183 VNIRPSSAVEV 215
           +NIRPSS VEV
Sbjct: 81  INIRPSSLVEV 91


>ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Populus trichocarpa]
           gi|222855719|gb|EEE93266.1| hypothetical protein
           POPTR_0005s06860g [Populus trichocarpa]
          Length = 159

 Score =  100 bits (250), Expect = 2e-19
 Identities = 49/95 (51%), Positives = 69/95 (72%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           RSRGA +D + V+A V+ SE+KV+DYL +T ACN T+E I++F++ CKKYDLAKAE+LN+
Sbjct: 21  RSRGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKINEFLERCKKYDLAKAELLNI 80

Query: 183 VNIRPSSAVEVYTAYFP*GY*LSRKMESKNVQPFI 287
           +NIRPS  VE+YT        +  +M+S+   P I
Sbjct: 81  INIRPSQTVEIYT--------IIEEMDSRFEMPII 107


>ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
           isoform X1 [Citrus sinensis]
           gi|568872598|ref|XP_006489454.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC9-like isoform X2 [Citrus
           sinensis]
          Length = 165

 Score =  100 bits (248), Expect = 3e-19
 Identities = 46/71 (64%), Positives = 61/71 (85%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           R +GA KDPT V+  V+PSEFKV+DYL ++AACNQT+ II++F+++ KK+ LAKAEILN+
Sbjct: 21  RCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNI 80

Query: 183 VNIRPSSAVEV 215
           +NIRPSS VEV
Sbjct: 81  INIRPSSLVEV 91


>gb|AFK37258.1| unknown [Lotus japonicus]
          Length = 162

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 44/72 (61%), Positives = 60/72 (83%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           R +GA KDPT VIA V+ SE+KV+DYL  TAA NQT+E I++F+   KK+DLAKAE+LN+
Sbjct: 21  RGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNI 80

Query: 183 VNIRPSSAVEVY 218
           +NIRP++AVE++
Sbjct: 81  INIRPAAAVEMF 92


>ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Capsella rubella]
           gi|565475100|ref|XP_006295191.1| hypothetical protein
           CARUB_v10024270mg [Capsella rubella]
           gi|482563898|gb|EOA28088.1| hypothetical protein
           CARUB_v10024270mg [Capsella rubella]
           gi|482563899|gb|EOA28089.1| hypothetical protein
           CARUB_v10024270mg [Capsella rubella]
          Length = 144

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 43/70 (61%), Positives = 58/70 (82%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E ++KF D+CK + +AKAEILN++
Sbjct: 22  SRGASKDTTRVIAPIAISEYKVYDYLVETAASTQTRESVNKFADKCKDFKVAKAEILNII 81

Query: 186 NIRPSSAVEV 215
           N+RPSSAVE+
Sbjct: 82  NLRPSSAVEL 91


>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
          Length = 166

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 44/70 (62%), Positives = 57/70 (81%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E I+KF D+CK + LAKAEILN++
Sbjct: 49  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNII 108

Query: 186 NIRPSSAVEV 215
           N+RPSS VE+
Sbjct: 109 NLRPSSIVEL 118


>gb|AFK40316.1| unknown [Lotus japonicus]
          Length = 162

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 43/72 (59%), Positives = 59/72 (81%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           R +GA KDPT VIA V+ SE+KV+DYL  TAA NQT+E I++F+   KK+DLAKAE+LN+
Sbjct: 21  RGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNI 80

Query: 183 VNIRPSSAVEVY 218
           +NI P++AVE++
Sbjct: 81  INITPAAAVEMF 92


>ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|332010295|gb|AED97678.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 106

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 44/70 (62%), Positives = 57/70 (81%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E I+KF D+CK + LAKAEILN++
Sbjct: 22  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNII 81

Query: 186 NIRPSSAVEV 215
           N+RPSS VE+
Sbjct: 82  NLRPSSIVEL 91


>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|334188590|ref|NP_001190602.1| RNA polymerase II,
           Rpb4, core protein [Arabidopsis thaliana]
           gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
           thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
           gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 139

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 44/70 (62%), Positives = 57/70 (81%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E I+KF D+CK + LAKAEILN++
Sbjct: 22  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNII 81

Query: 186 NIRPSSAVEV 215
           N+RPSS VE+
Sbjct: 82  NLRPSSIVEL 91


>ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258513 [Solanum
           lycopersicum]
          Length = 168

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 16/88 (18%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKA----- 167
           RSRGAG+DPT VI  ++PSEFKV+DYLEQTAACNQT+++I + + +CK   L K      
Sbjct: 21  RSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGELMGKCKCIKLEKCECIKP 80

Query: 168 -----------EILNVVNIRPSSAVEVY 218
                      EI+N++NIRPSS VE+Y
Sbjct: 81  KQCECIKLEGDEIVNIINIRPSSLVELY 108


>ref|XP_002525535.1| conserved hypothetical protein [Ricinus communis]
           gi|223535214|gb|EEF36893.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 138

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/71 (59%), Positives = 58/71 (81%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNV 182
           ++RGAGKD + VIA V+PSE+KV+DYL +T AC QT+E I++F+++CK Y LAKAEILN+
Sbjct: 21  KARGAGKDSSRVIAPVAPSEYKVYDYLMETPACRQTREQINEFMEKCKAYKLAKAEILNI 80

Query: 183 VNIRPSSAVEV 215
           +NI P   VE+
Sbjct: 81  INIVPRELVEL 91


>ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587541 isoform X1 [Solanum
           tuberosum] gi|565389533|ref|XP_006360507.1| PREDICTED:
           uncharacterized protein LOC102587541 isoform X2 [Solanum
           tuberosum]
          Length = 173

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 16/88 (18%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAK------ 164
           RSRGAG+DPT VI  ++PSEFKV+DYLEQTAACNQT+++I + + +CK   L K      
Sbjct: 21  RSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGELMGKCKSIKLEKCKCIKP 80

Query: 165 ----------AEILNVVNIRPSSAVEVY 218
                      E +N++NIRPSS VE+Y
Sbjct: 81  EKCKCIKLKHVETVNIINIRPSSLVELY 108


>ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutrema salsugineum]
           gi|557090971|gb|ESQ31618.1| hypothetical protein
           EUTSA_v10005100mg [Eutrema salsugineum]
          Length = 140

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 40/70 (57%), Positives = 57/70 (81%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA +D T VIA ++ SE+KV+DYL +TAAC QT+E +++F D+CK + + KAEILN++
Sbjct: 22  SRGASRDTTRVIAPIAKSEYKVYDYLVETAACTQTRESVNEFADKCKAFKVWKAEILNII 81

Query: 186 NIRPSSAVEV 215
           N+RPSS VE+
Sbjct: 82  NLRPSSIVEL 91


>ref|XP_002884101.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329941|gb|EFH60360.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 161

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 42/70 (60%), Positives = 56/70 (80%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E + KF D+CK + +AKAEILN++
Sbjct: 44  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVTKFADKCKDFKVAKAEILNII 103

Query: 186 NIRPSSAVEV 215
           N+RPSS VE+
Sbjct: 104 NLRPSSIVEL 113


>ref|XP_002866524.1| hypothetical protein ARALYDRAFT_496480 [Arabidopsis lyrata subsp.
           lyrata] gi|297312359|gb|EFH42783.1| hypothetical protein
           ARALYDRAFT_496480 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 42/70 (60%), Positives = 56/70 (80%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIIHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E + KF D+CK + +AKAEILN++
Sbjct: 19  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVTKFADKCKDFKVAKAEILNII 78

Query: 186 NIRPSSAVEV 215
           N+RPSS VE+
Sbjct: 79  NLRPSSIVEL 88