BLASTX nr result
ID: Rehmannia22_contig00025782
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00025782
(707 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 288 1e-75
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 288 1e-75
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,... 286 6e-75
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,... 285 8e-75
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis] 269 6e-70
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,... 265 1e-68
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr... 262 9e-68
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,... 261 2e-67
gb|EMJ20400.1| hypothetical protein PRUPE_ppa017025mg [Prunus pe... 253 4e-65
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu... 250 4e-64
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr... 247 3e-63
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 246 4e-63
gb|ESW20889.1| hypothetical protein PHAVU_005G023100g [Phaseolus... 244 2e-62
gb|ESW20887.1| hypothetical protein PHAVU_005G023100g [Phaseolus... 244 2e-62
ref|XP_006287834.1| hypothetical protein CARUB_v10001054mg [Caps... 242 7e-62
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu... 241 1e-61
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,... 234 2e-59
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,... 234 2e-59
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,... 232 8e-59
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca... 229 5e-58
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 288 bits (737), Expect = 1e-75
Identities = 144/234 (61%), Positives = 180/234 (76%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
I + LDK+LCNGRES E+I SY+RLVVS+A+ YQG+GLSLQDL QEGSIGLLRGA +F
Sbjct: 67 IKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERF 126
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+P+RG KLSTY YWWIRQ IRLPGSI +V KI E TVLSR+L+R PT
Sbjct: 127 DPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPT 186
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIAE I N + VRL ER+R+PIS+DQ +T QG M+LQ+IIPGPDE TP+ MVK+
Sbjct: 187 YDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQG-CMTLQEIIPGPDETTPQKMVKRQ 245
Query: 167 MLRPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINS 6
+++ E+++ L LC+REA+IL+L++G+NG+ P SFEEI + LSRERVRQINS
Sbjct: 246 LMKQEVERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINS 299
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 288 bits (737), Expect = 1e-75
Identities = 144/234 (61%), Positives = 180/234 (76%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
I + LDK+LCNGRES E+I SY+RLVVS+A+ YQG+GLSLQDL QEGSIGLLRGA +F
Sbjct: 174 IKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERF 233
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+P+RG KLSTY YWWIRQ IRLPGSI +V KI E TVLSR+L+R PT
Sbjct: 234 DPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPT 293
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIAE I N + VRL ER+R+PIS+DQ +T QG M+LQ+IIPGPDE TP+ MVK+
Sbjct: 294 YDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQG-CMTLQEIIPGPDETTPQKMVKRQ 352
Query: 167 MLRPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINS 6
+++ E+++ L LC+REA+IL+L++G+NG+ P SFEEI + LSRERVRQINS
Sbjct: 353 LMKQEVERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINS 406
>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum lycopersicum]
Length = 442
Score = 286 bits (731), Expect = 6e-75
Identities = 149/234 (63%), Positives = 181/234 (77%), Gaps = 1/234 (0%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+S +LDK+L N +ES++KI Y+ LVVSVA+SYQG+GLSLQDL QEGSIGLL GA KF
Sbjct: 189 MSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKF 248
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
NP++G KLSTYAYWWIRQ IRLPGSIS LVPKIC T LSRKL+R P+
Sbjct: 249 NPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNANTELSRKLRRMPS 308
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIAEA+G + + VRL IERNR+PIS+DQ +T QG MSLQ+II GP++ TPE VK+
Sbjct: 309 YDEIAEALGMDVSTVRLVIERNRAPISIDQIVTTQG-YMSLQNIISGPEDTTPEENVKRQ 367
Query: 167 MLRPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
M++ +++K+L+ LCDREA ILKLH+GLNGD P SFEEI L LSRER+RQIN
Sbjct: 368 MMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQSFEEIGRVLKLSRERIRQIN 421
>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum tuberosum]
Length = 421
Score = 285 bits (730), Expect = 8e-75
Identities = 149/234 (63%), Positives = 180/234 (76%), Gaps = 1/234 (0%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+S +LDK+L N +ES++KI Y+ LVVSVA+SYQG+GLSLQDL QEGSIGLL GA KF
Sbjct: 168 MSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGLLHGAKKF 227
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
NP++G KLSTYAYWWIRQ IRLPGSIS LVPKIC T LSRKL+R P+
Sbjct: 228 NPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNANTELSRKLRRMPS 287
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIAEA+G + + VRL IERNR+PIS+DQ +T QG MSLQ+II GP++ TPE VK+
Sbjct: 288 YDEIAEALGMDVSTVRLVIERNRAPISIDQIVTSQG-YMSLQNIISGPEDTTPEENVKRQ 346
Query: 167 MLRPEIQKLL-KCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
M++ +++K+L LCDREA ILKLH+GLNGD P SFEEI L LSRER+RQIN
Sbjct: 347 MMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQSFEEIGRVLKLSRERIRQIN 400
>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 422
Score = 269 bits (688), Expect = 6e-70
Identities = 135/234 (57%), Positives = 178/234 (76%), Gaps = 1/234 (0%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+ +DK+LC+ RES+E+I+ SY+RLVVSVA+ YQG+GLS DL QEGS+GLLRGA KF
Sbjct: 167 MEMRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKF 226
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+P+RGNKLSTY YWWIRQ +RLPG++ +V K+ E VL+++L+RFPT
Sbjct: 227 DPQRGNKLSTYVYWWIRQAIIRAIENKSRVVRLPGNMCGIVAKVTEANNVLNKRLRRFPT 286
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIA+ +G + + VRL ER R PISLD+ IT +G M+LQ+IIPGP+EI+PE MV+K
Sbjct: 287 YDEIAQVVGVHVSTVRLVSERIRPPISLDRAITERG-CMTLQEIIPGPEEISPEKMVRKQ 345
Query: 167 MLRPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
+++ EI+KLLK L DREA++L+LH+GL+GD P S EEI L LSRER+RQIN
Sbjct: 346 LMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLSCEEIGRLLKLSRERIRQIN 399
>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 452
Score = 265 bits (677), Expect = 1e-68
Identities = 137/234 (58%), Positives = 169/234 (72%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
I +DK++CN RES+E+I SY+ LVVSVASSYQG+GLSLQDL QEGSIGLLRGA KF
Sbjct: 200 IKMSSIDKVICNRRESQERIIKSYRGLVVSVASSYQGKGLSLQDLIQEGSIGLLRGAEKF 259
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+PERG KLSTY YWWIRQ IRLPG + ++ KI +++ QR P+
Sbjct: 260 DPERGLKLSTYVYWWIRQAIIRAIENKSRIIRLPGHMCGVMAKITRAKKNFNQRFQRLPS 319
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
+DEIAE I + VRL ER+R P+SLD+ +T QG M+LQDII GPDE+ PE M+KK
Sbjct: 320 HDEIAEMINVQASIVRLVCERSRLPLSLDRVVTDQG-CMALQDIIRGPDEMMPETMLKKQ 378
Query: 167 MLRPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINS 6
+++ E++KLL L DREA +L+LH+GLNGD P SFEEI L LSRERVRQINS
Sbjct: 379 LMKQEMEKLLNRLSDREAEVLRLHFGLNGDTPQSFEEIGRLLKLSRERVRQINS 432
>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
gi|557541154|gb|ESR52198.1| hypothetical protein
CICLE_v10033747mg [Citrus clementina]
Length = 436
Score = 262 bits (669), Expect = 9e-68
Identities = 138/232 (59%), Positives = 171/232 (73%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+ Q K+DKILC RES+E+I SY+ LVVS+A+ YQG+GLSL+DL QEGSIGLLRGA +F
Sbjct: 184 MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRF 243
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
NPERG KLSTY YWWI+Q IRLPGS+S +V KI E VLSR+L+R PT
Sbjct: 244 NPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRRMPT 303
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
+EIAE + + + VRLAIER R PISLD IT G M+LQDIIPGPDE PE MV+K
Sbjct: 304 DNEIAEMLNIHVSTVRLAIERTRHPISLDGAITDTG-CMTLQDIIPGPDETMPEKMVQKQ 362
Query: 167 MLRPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 12
+++ E+++LL+ L +REA IL+LH+GL+G P S +EI L LSRERVRQI
Sbjct: 363 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQI 414
>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Citrus sinensis]
Length = 436
Score = 261 bits (666), Expect = 2e-67
Identities = 138/232 (59%), Positives = 170/232 (73%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+ Q K+DKILC RES+E+I SY+ LVVS+A+ YQG+GLSL+DL QEGSIGLLRGA +F
Sbjct: 184 MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRF 243
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
NPERG KLSTY YWWI+Q IRLPGS+S +V KI E VLSR+L+R PT
Sbjct: 244 NPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRRMPT 303
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
EIAE + + + VRLAIER R PISLD IT G M+LQDIIPGPDE PE MV+K
Sbjct: 304 DSEIAEMLNIHVSNVRLAIERTRHPISLDGAITDTG-CMTLQDIIPGPDETMPEKMVQKQ 362
Query: 167 MLRPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 12
+++ E+++LL+ L +REA IL+LH+GL+G P S +EI L LSRERVRQI
Sbjct: 363 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQI 414
>gb|EMJ20400.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
Length = 440
Score = 253 bits (646), Expect = 4e-65
Identities = 131/233 (56%), Positives = 169/233 (72%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+ +DK+LC RES+EKI SY+ LVVSVASSYQG+GLS QDL QEGSIGLLRGA KF
Sbjct: 188 MKMRSIDKVLCKRRESQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQEGSIGLLRGAEKF 247
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+ ER KLSTY YWWIRQ IRLPG + ++ KI + L+++ QR P+
Sbjct: 248 DHEREWKLSTYVYWWIRQAIIRAIENKSRIIRLPGHVCGMMAKITKAQNSLNQRFQRLPS 307
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
+DEIAE I N + V+L ER+R PISLD+ T +G SM+LQ+II GP+E+ PE M+ +
Sbjct: 308 HDEIAEVIKVNASTVKLVCERSRPPISLDRVATVRG-SMTLQEIIQGPEEMMPEKMLIRQ 366
Query: 167 MLRPEIQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
+++ E++KLLK L DREA++L+LH+GLNG++P SFEEI L LSRERVRQIN
Sbjct: 367 LMKQEVEKLLKTLSDREANVLRLHFGLNGESPQSFEEIGRLLKLSRERVRQIN 419
>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331146|gb|ERP56881.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 423
Score = 250 bits (638), Expect = 4e-64
Identities = 131/233 (56%), Positives = 166/233 (71%), Gaps = 1/233 (0%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+ ++ +D +LC GRES EKI SY+RLVVS+A+SYQ +GLSLQDL QEGSIGLLRGA +F
Sbjct: 170 MEKNSVDNVLCKGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERF 229
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+P+RG KLSTY YWWI++ +RLP LV KI LS KL+R P+
Sbjct: 230 DPQRGYKLSTYVYWWIKEAILTAISNNTRMVRLPRRWWMLVAKIAGANNDLSNKLRRSPS 289
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIA+ + + VRL ER RSPISLDQ + GQ S++LQ+IIPGPDE PE MVK++
Sbjct: 290 YDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQ-NSLTLQEIIPGPDETIPENMVKRE 348
Query: 167 MLRPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 12
+L+ E++KL + L +REAHIL+LH+GLNG P S EEI + LSRERVRQI
Sbjct: 349 LLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIGRLVKLSRERVRQI 401
>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
gi|557100961|gb|ESQ41324.1| hypothetical protein
EUTSA_v10013654mg [Eutrema salsugineum]
Length = 421
Score = 247 bits (630), Expect = 3e-63
Identities = 127/227 (55%), Positives = 167/227 (73%)
Frame = -1
Query: 689 DKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERGN 510
++ILC RE+ EKIT Y+RLVVS+A+ YQG+GL+LQDL QEGSIGLLRGA +F+PERG
Sbjct: 172 NEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGY 231
Query: 509 KLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIAE 330
KLSTY YWWI+Q ++LPGS+ L K+ E VL+RKL+R P+ +EIAE
Sbjct: 232 KLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLKRIPSCEEIAE 291
Query: 329 AIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPEI 150
+ + +AVRLA+ER RSP+SLD+ + GR M+LQ+I+ GPDE PE MVK++ ++ EI
Sbjct: 292 HLNIHVSAVRLAVERGRSPVSLDRVASLNGR-MTLQEIVRGPDETRPEEMVKREHMKHEI 350
Query: 149 QKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
++LL L RE+ +L L++GLNG+ P SFEEI L LSRERVRQIN
Sbjct: 351 EQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQIN 397
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 246 bits (629), Expect = 4e-63
Identities = 126/227 (55%), Positives = 168/227 (74%)
Frame = -1
Query: 689 DKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERGN 510
++ILC +E+ EKIT Y+RLVVS+A+ YQG+GL+LQDL QEGSIGLLRGA +F+P+RG
Sbjct: 170 NEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGY 229
Query: 509 KLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIAE 330
KLSTY YWWI+Q ++LPGS+ L K+ E VL+RKL+R P+ +EIAE
Sbjct: 230 KLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAE 289
Query: 329 AIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPEI 150
+ N +AVRLA+ER+RSP+SLD+ + GR M+LQ+I+ GPDE PE MVK++ ++ EI
Sbjct: 290 HLNLNVSAVRLAVERSRSPVSLDRVASQNGR-MTLQEIVRGPDETRPEEMVKREHMKHEI 348
Query: 149 QKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
++LL L RE+ +L L++GLNG+ P SFEEI L LSRERVRQIN
Sbjct: 349 EQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQIN 395
>gb|ESW20889.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
Length = 367
Score = 244 bits (623), Expect = 2e-62
Identities = 119/228 (52%), Positives = 161/228 (70%)
Frame = -1
Query: 692 LDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERG 513
LDK LCN RES+E++ + Y+ LV S+A+ Y G+GLSLQDL QEG++GLLRGA KF PERG
Sbjct: 120 LDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQEGTVGLLRGAEKFEPERG 179
Query: 512 NKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIA 333
KLSTY YWWI+Q +RLP S +V K+ + +LS +L+R PTYDE A
Sbjct: 180 YKLSTYVYWWIKQAMIKAIARKSRLVRLPSGKSEMVAKVAQANNILSSRLRRKPTYDETA 239
Query: 332 EAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPE 153
E + + +RL E++R PISLD+ +T G M+LQ+IIPGP+++TPE MVK+ +++ E
Sbjct: 240 EVLNVKASTIRLVSEKSRKPISLDKVVTDCGH-MTLQEIIPGPEDMTPEKMVKRQLMKQE 298
Query: 152 IQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
+ KLL L REA I+ L+YGLNG+ P +F+EI + LSRER+RQIN
Sbjct: 299 VMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIGGMMQLSRERIRQIN 346
>gb|ESW20887.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
Length = 366
Score = 244 bits (623), Expect = 2e-62
Identities = 119/228 (52%), Positives = 161/228 (70%)
Frame = -1
Query: 692 LDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERG 513
LDK LCN RES+E++ + Y+ LV S+A+ Y G+GLSLQDL QEG++GLLRGA KF PERG
Sbjct: 119 LDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQEGTVGLLRGAEKFEPERG 178
Query: 512 NKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIA 333
KLSTY YWWI+Q +RLP S +V K+ + +LS +L+R PTYDE A
Sbjct: 179 YKLSTYVYWWIKQAMIKAIARKSRLVRLPSGKSEMVAKVAQANNILSSRLRRKPTYDETA 238
Query: 332 EAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPE 153
E + + +RL E++R PISLD+ +T G M+LQ+IIPGP+++TPE MVK+ +++ E
Sbjct: 239 EVLNVKASTIRLVSEKSRKPISLDKVVTDCGH-MTLQEIIPGPEDMTPEKMVKRQLMKQE 297
Query: 152 IQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
+ KLL L REA I+ L+YGLNG+ P +F+EI + LSRER+RQIN
Sbjct: 298 VMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIGGMMQLSRERIRQIN 345
>ref|XP_006287834.1| hypothetical protein CARUB_v10001054mg [Capsella rubella]
gi|482556540|gb|EOA20732.1| hypothetical protein
CARUB_v10001054mg [Capsella rubella]
Length = 419
Score = 242 bits (618), Expect = 7e-62
Identities = 123/227 (54%), Positives = 168/227 (74%)
Frame = -1
Query: 689 DKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERGN 510
++ILC +E+ EKIT Y+RLVVS+A+ YQG+GL+LQDL QEGSIGLLRGA +F+P+RG
Sbjct: 170 NEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGY 229
Query: 509 KLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIAE 330
KLSTY YWWI+Q ++LPGS+ L ++ E VL+RKL+R P+ +EIAE
Sbjct: 230 KLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTARVAEASNVLTRKLRRQPSCEEIAE 289
Query: 329 AIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPEI 150
+ + +AVRLA+E++RSP+SLD+ + GR M+LQ+I+ GPDE PE MVK++ ++ EI
Sbjct: 290 HLNLHVSAVRLAVEKSRSPVSLDRVASQNGR-MTLQEIVRGPDETRPEEMVKREHIKNEI 348
Query: 149 QKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
++LL L RE+ +L L++GLNG+ P SFEEI L LSRERVRQIN
Sbjct: 349 EQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQIN 395
>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331145|gb|ERP56880.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 419
Score = 241 bits (616), Expect = 1e-61
Identities = 129/233 (55%), Positives = 163/233 (69%), Gaps = 1/233 (0%)
Frame = -1
Query: 707 ISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKF 528
+ ++ +D +LC GRES EKI SY+RLVVS+A+SYQ +GLSLQDL QEGSIGLLRGA +F
Sbjct: 170 MEKNSVDNVLCKGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERF 229
Query: 527 NPERGNKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPT 348
+P+RG KLSTY YWWI++ R LV KI LS KL+R P+
Sbjct: 230 DPQRGYKLSTYVYWWIKEAILTAISNNTRMRRW----WMLVAKIAGANNDLSNKLRRSPS 285
Query: 347 YDEIAEAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKD 168
YDEIA+ + + VRL ER RSPISLDQ + GQ S++LQ+IIPGPDE PE MVK++
Sbjct: 286 YDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQ-NSLTLQEIIPGPDETIPENMVKRE 344
Query: 167 MLRPEIQKLLK-CLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQI 12
+L+ E++KL + L +REAHIL+LH+GLNG P S EEI + LSRERVRQI
Sbjct: 345 LLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIGRLVKLSRERVRQI 397
>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 341
Score = 234 bits (597), Expect = 2e-59
Identities = 115/230 (50%), Positives = 162/230 (70%)
Frame = -1
Query: 692 LDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERG 513
+D+ILC RES +++ Y +LV+S+A+ YQG+GLSLQDLTQEG+IGLL+GA +F P RG
Sbjct: 94 IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRG 153
Query: 512 NKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIA 333
+KLSTYAYWWIRQ +RLPG + +V +I E L KL R PT E+A
Sbjct: 154 HKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVA 213
Query: 332 EAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPE 153
E++ + + +RL +ER++ PIS++QP+ + ++LQ+I+PGPD +TPE MV + +++ E
Sbjct: 214 ESLKVHLSTIRLVMERSKRPISINQPVNDRS-CLTLQEIMPGPDNLTPENMVMRKLMKQE 272
Query: 152 IQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSA 3
+++LL L REA IL L++GLNG+ P SFEEI LNLSRE +RQ N A
Sbjct: 273 LKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIA 322
>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 234 bits (597), Expect = 2e-59
Identities = 115/230 (50%), Positives = 162/230 (70%)
Frame = -1
Query: 692 LDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERG 513
+D+ILC RES +++ Y +LV+S+A+ YQG+GLSLQDLTQEG+IGLL+GA +F P RG
Sbjct: 189 IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRG 248
Query: 512 NKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIA 333
+KLSTYAYWWIRQ +RLPG + +V +I E L KL R PT E+A
Sbjct: 249 HKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVA 308
Query: 332 EAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPE 153
E++ + + +RL +ER++ PIS++QP+ + ++LQ+I+PGPD +TPE MV + +++ E
Sbjct: 309 ESLKVHLSTIRLVMERSKRPISINQPVNDRS-CLTLQEIMPGPDNLTPENMVMRKLMKQE 367
Query: 152 IQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQINSA 3
+++LL L REA IL L++GLNG+ P SFEEI LNLSRE +RQ N A
Sbjct: 368 LKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIA 417
>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cicer arietinum]
Length = 407
Score = 232 bits (592), Expect = 8e-59
Identities = 119/228 (52%), Positives = 161/228 (70%)
Frame = -1
Query: 692 LDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERG 513
LDK+L N RES+E++ Y+ LV S+A+ YQG+GLS QDLTQEG+IGLL GA KF+P RG
Sbjct: 160 LDKVLSNTRESKERLAHEYRGLVASIAARYQGKGLSFQDLTQEGTIGLLHGAEKFDPNRG 219
Query: 512 NKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIA 333
KLSTY YWWI+Q +RLPG +V KI E VLS++L+R PTY+E+A
Sbjct: 220 CKLSTYVYWWIKQAILKALARKSRLVRLPGEKYGMVGKIAEAKNVLSKRLRRKPTYNEMA 279
Query: 332 EAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPE 153
E + N + V+L ER+R PISLD+ + QG +++L++I+PGP E+ PE MV++ + +
Sbjct: 280 EVLNVNVSIVKLVSERSRQPISLDKAVFDQG-NLTLKEIMPGPVEMIPEKMVERQLKKQG 338
Query: 152 IQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
+ KLL L REA IL+L++GLNG+ P SFEEI L LSRER+RQI+
Sbjct: 339 VVKLLNTLNKREAEILRLYFGLNGETPLSFEEIGKQLKLSRERIRQIH 386
>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 267
Score = 229 bits (585), Expect = 5e-58
Identities = 118/228 (51%), Positives = 159/228 (69%)
Frame = -1
Query: 692 LDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLSLQDLTQEGSIGLLRGAIKFNPERG 513
+DK+L N R+S+E++ Y+ LV S+A+ YQG+GLS+QDL QEG+IGLL GA KF+P RG
Sbjct: 20 VDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRG 79
Query: 512 NKLSTYAYWWIRQXXXXXXXXXXXXIRLPGSISALVPKICETITVLSRKLQRFPTYDEIA 333
KLSTY YWWI+Q IRLPG +V KI E VL R+L+R PTY+EIA
Sbjct: 80 CKLSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIA 139
Query: 332 EAIGANPTAVRLAIERNRSPISLDQPITGQGRSMSLQDIIPGPDEITPEAMVKKDMLRPE 153
E + N + V+L ER+R PISLD+ IT Q ++ L++IIPGP E+ PE MV++ +++
Sbjct: 140 EVLNVNVSTVKLVSERSRQPISLDRSITDQS-NLILKEIIPGPVEMIPEKMVERQLMKQG 198
Query: 152 IQKLLKCLCDREAHILKLHYGLNGDAPWSFEEIATFLNLSRERVRQIN 9
+ KLL L RE I++L++GLNG+ P SFEEI L LSRER+RQI+
Sbjct: 199 VVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIH 246