BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00024900
         (1432 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              738   0.0  
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     708   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         684   0.0  
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   681   0.0  
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                675   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   675   0.0  
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]        675   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  674   0.0  
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        674   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   672   0.0  
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       671   0.0  
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]   671   0.0  
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal...   671   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  671   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   670   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   668   0.0  
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         668   0.0  
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]        666   0.0  
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   665   0.0  
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc...   655   0.0  

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  738 bits (1906), Expect = 0.0
 Identities = 347/472 (73%), Positives = 414/472 (87%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++++ DVFP E P GL PI GIEHQIDF+PGASLPNRPAYR+N  ETKEL++QV EL+ +
Sbjct: 877  LQDYTDVFPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMER 936

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              IRESMSPCAVP+L V KKDGSWRMCVDCRAINNIT+KYR+P+PRLDDML+ELHGS+IF
Sbjct: 937  GHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIF 996

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DL+SGYHQIRM+EGDEWKTAFKT  GLYEWLVMPFG+TNAPSTFMRLMNH+LRAFIG
Sbjct: 997  SKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIG 1056

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FV+VYFDDIL+Y+KSL EH++HL+ VLEVLRKEKLYAN+KKCTF +  L+FLGFVV++ 
Sbjct: 1057 RFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTD 1116

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            G+ VDEEK+KA  +WP P S  +VRSFHGLA F RRFV DFSTLAAPL  +IKK+V F+W
Sbjct: 1117 GVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKW 1176

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
             +AQ+ AF+ LKE+L HAP+L+LPDF K FEIECDASGVGIG +LMQ+++  A+FS KL 
Sbjct: 1177 EQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLG 1236

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            GA LNYPTYDKELYALV AL+T QHYLWPKEF+I+T H+SLK+LKGQQKLNK+HA W+EF
Sbjct: 1237 GATLNYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEF 1296

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY+++YK+GK NVVADALSR Y L+S+LDAK+LGFEH+K LY +D DF
Sbjct: 1297 IETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDF 1348


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  708 bits (1828), Expect = 0.0
 Identities = 333/473 (70%), Positives = 401/473 (84%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+EDVFP E P GL P+ GIEHQID IPGA+LPNRPAYR+N EETKE+QRQV  LL K
Sbjct: 688  LQEYEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDK 747

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPCAVP++ V KKDGSWRMCVDCRAINNIT++YR+P+PRLDDML+EL GS IF
Sbjct: 748  GYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIF 807

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDLRSG+HQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMNH+LRAFIG
Sbjct: 808  SKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIG 867

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            KFVVVYFDDILIY+K+L EH+ H++ VL+VLRKE+LYAN++KCTFC+ Q++FLGFVV+  
Sbjct: 868  KFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGL 927

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VDE K+KA  DWP P + SQV+SF GLA F RRFV  FST+AAPL  + KK VAFQW
Sbjct: 928  GIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQW 987

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            GE Q++AF+ LK+RL+  PLL LPDFTK FE+ECDASG+GIG +LMQ  +  A+FS KL 
Sbjct: 988  GEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLG 1047

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            GA LNY  YDKELYALV AL+TWQHYLWPKEF+I++ H++LKYLKGQ KLN++HA W+EF
Sbjct: 1048 GAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEF 1107

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDFA 3
            IE FPY+++YK+GK N+VADALSR   L++ L+ K+ G E +KELY  DLDF+
Sbjct: 1108 IETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFS 1160


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  684 bits (1764), Expect = 0.0
 Identities = 316/472 (66%), Positives = 393/472 (83%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ DVFP E+P+GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 688  LQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDK 747

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPCAVP++ V KKDG+WRMCVDCRAINNITI+YR+P+PRLDDML+EL G+ +F
Sbjct: 748  GYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVF 807

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 808  SKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 867

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            KFVVVYFDDILIY+KS+ EH+DH+RAV   LR  +L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 868  KFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 927

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP P + +QVRSF GLA F RRFV DFST+AAPL  + KK V F W
Sbjct: 928  GIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSW 987

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G+ Q+ AF  LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 988  GKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLS 1047

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G+ LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 1048 GSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEF 1107

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK N++ADALSR YTL++ LD KI G E +K+ Y+HD DF
Sbjct: 1108 IESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADF 1159


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  681 bits (1758), Expect = 0.0
 Identities = 317/472 (67%), Positives = 388/472 (82%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ DVFP E+P GL P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 685  LQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDK 744

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPCAVP++ V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 745  GYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVF 804

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LR FIG
Sbjct: 805  SKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIG 864

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            KFVVVYFDDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 865  KFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 924

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP P + SQVRSF GLA F RRFV DFST+AAPL  + KK V F W
Sbjct: 925  GIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTW 984

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G +Q+ AF  LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 985  GTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLS 1044

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G  LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 1045 GPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEF 1104

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK N++ADALSR YTL++ LD KI G E +K+ Y HD DF
Sbjct: 1105 IESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADF 1156



 Score =  280 bits (716), Expect = 1e-72
 Identities = 146/318 (45%), Positives = 204/318 (64%), Gaps = 2/318 (0%)
 Frame = -3

Query: 1037 YHQIRMREGDEWKT--AFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVY 864
            +H+     GD+  T  +    +GLYE+ VM FG+TNAP+ FM LMN +   ++ KFVVV+
Sbjct: 1603 HHKFAATIGDDRATNPSGFASYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVF 1662

Query: 863  FDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSRGIMVDE 684
             DDIL+Y++S  +H  HLR VL  LR+ +LYA + KC F   ++ FLG V++++G+ VD 
Sbjct: 1663 IDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDP 1722

Query: 683  EKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDR 504
            E + A  DW +P + +Q+RSF GLA + RRF+ +FS +A P+  ++KK   F W    ++
Sbjct: 1723 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEK 1782

Query: 503  AFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLSGAALNY 324
            AF+ LKE+L  +P+L LPD  K F + CDAS  G+G +LMQE  + A+ S +L     NY
Sbjct: 1783 AFQTLKEKLVSSPVLILPDTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNY 1842

Query: 323  PTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEFIEMFPY 144
            PT+D EL A+V ALK W+HYL      IYT HKSLKY+  Q  LN +   WLE I+ +  
Sbjct: 1843 PTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDV 1902

Query: 143  ILRYKQGKTNVVADALSR 90
             + Y  GK NVVADALSR
Sbjct: 1903 GIHYHPGKANVVADALSR 1920


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  675 bits (1742), Expect = 0.0
 Identities = 316/470 (67%), Positives = 385/470 (81%)
 Frame = -3

Query: 1415 EFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKL 1236
            E+ DVFP E+P GL P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  
Sbjct: 610  EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 669

Query: 1235 IRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIFSK 1056
            +RES+SPCAV ++ V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +FSK
Sbjct: 670  VRESLSPCAVLVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 729

Query: 1055 IDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKF 876
            +DLRSGYHQIRM  GDEWKTAFKTK GLYEWLVMPFG+TNAP+TFMRLMN +LR FIGKF
Sbjct: 730  VDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKF 789

Query: 875  VVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSRGI 696
            VVVYFDDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG+VV  +GI
Sbjct: 790  VVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGI 849

Query: 695  MVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGE 516
             VD+ K++A   WP P + SQVRSF GLA F RRFV DFST+AAPL A+ KK V F WG 
Sbjct: 850  EVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGT 909

Query: 515  AQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLSGA 336
            +Q+ AF  LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLSG 
Sbjct: 910  SQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGP 969

Query: 335  ALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEFIE 156
             LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK++  Q KLN++HA W+EFIE
Sbjct: 970  VLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIHSQGKLNRRHAKWVEFIE 1029

Query: 155  MFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
             FPY++++K+GK N++ADALSR YTL++ LD KI G E +K+ Y+HD DF
Sbjct: 1030 SFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYVHDADF 1079


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  675 bits (1742), Expect = 0.0
 Identities = 314/472 (66%), Positives = 387/472 (81%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ DVFP E+P GL P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 664  LQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDK 723

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPCAVP++ V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 724  GYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVF 783

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK++LRSGYHQI M+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LR FIG
Sbjct: 784  SKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIG 843

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            KFVVVYFDDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 844  KFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 903

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP P + SQVRSF GLA F  RFV DFST+AAPL A+ KK V F W
Sbjct: 904  GIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTW 963

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G +Q+ AF  LK +L HAPLL LPDF K FE+ECDASG+G+G +L+QE ++ A+FS KLS
Sbjct: 964  GTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLS 1023

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G  LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 1024 GPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEF 1083

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK N++A+ALSR YTL++ LD KI G E +K+ Y HD DF
Sbjct: 1084 IESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADF 1135


>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
          Length = 1667

 Score =  675 bits (1742), Expect = 0.0
 Identities = 316/470 (67%), Positives = 385/470 (81%)
 Frame = -3

Query: 1415 EFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKL 1236
            E+ DVFP E+P GL P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  
Sbjct: 610  EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 669

Query: 1235 IRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIFSK 1056
            +RES+SPCAV ++ V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +FSK
Sbjct: 670  VRESLSPCAVLVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 729

Query: 1055 IDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKF 876
            +DLRSGYHQIRM  GDEWKTAFKTK GLYEWLVMPFG+TNAP+TFMRLMN +LR FIGKF
Sbjct: 730  VDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKF 789

Query: 875  VVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSRGI 696
            VVVYFDDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG+VV  +GI
Sbjct: 790  VVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGI 849

Query: 695  MVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGE 516
             VD+ K++A   WP P + SQVRSF GLA F RRFV DFST+AAPL A+ KK V F WG 
Sbjct: 850  EVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGT 909

Query: 515  AQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLSGA 336
            +Q+ AF  LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLSG 
Sbjct: 910  SQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGP 969

Query: 335  ALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEFIE 156
             LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK++  Q KLN++HA W+EFIE
Sbjct: 970  VLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIHSQGKLNRRHAKWVEFIE 1029

Query: 155  MFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
             FPY++++K+GK N++ADALSR YTL++ LD KI G E +K+ Y+HD DF
Sbjct: 1030 SFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYVHDADF 1079


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  674 bits (1739), Expect = 0.0
 Identities = 319/472 (67%), Positives = 388/472 (82%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++EF DVFP ++P GL PI GIEHQID IPGASLPNR  YR+N EETKE+ RQV ELL K
Sbjct: 741  LQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDK 800

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              IRES+SPCAVPI+ V KKDG+ RMCVDCR INNITI+YR+P+PRLDDML+EL GS IF
Sbjct: 801  GYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIF 860

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 861  SKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 920

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++SL +HLDHLRAV   LR  +L+ N+ KCTFC+ ++ FLG+VV  +
Sbjct: 921  RFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQ 980

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ KI+A   WP+P + +QVRSF GLA F RRFV DFST+AAPL  + KK V + W
Sbjct: 981  GIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSW 1040

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G AQ+ AF  LK++L HAPLL LPDF K FE+ECDASG+G+G +L+Q+ +  A+FS KLS
Sbjct: 1041 GTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLS 1100

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK++K Q KLN++HA W+EF
Sbjct: 1101 GPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEF 1160

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY+++ K+GK NV+ADALSR YT++S LD KI G E +K+ Y+HD DF
Sbjct: 1161 IETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADF 1212


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  674 bits (1738), Expect = 0.0
 Identities = 314/472 (66%), Positives = 385/472 (81%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ DVFP E+P GL  + GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 779  LQEYSDVFPKEVPPGLPLVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDK 838

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPCAVP++ V KKDGSWRMCVDCRAINN TI+YR+P+PRLDDML+EL GS +F
Sbjct: 839  GYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLDELSGSIVF 898

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DLRSGYHQIRM+ GDEWKT FKTK GLYEWLVMPFG+TNAPSTFMRLMN +LR FIG
Sbjct: 899  SKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIG 958

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            KFVVVYFDDILIY+KS+ EH +HLRAV   LR  +L+ N+KKCTFC+ ++ FLG+VV  +
Sbjct: 959  KFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSFLGYVVTPQ 1018

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP P + SQVRSF GLA F RRFV DFST+AAPL A+ KK V F W
Sbjct: 1019 GIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTW 1078

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G +Q+ AF  LK++L HAPLL LPDF K FE+ECDA+G+G+G + +QE +  A+FS KLS
Sbjct: 1079 GTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDANGIGLGGVFLQEGKPVAYFSEKLS 1138

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G  LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 1139 GPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEF 1198

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK N++ADALSR YTL++ LD KI G E +K+ Y HD DF
Sbjct: 1199 IESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADF 1250



 Score =  148 bits (374), Expect = 5e-33
 Identities = 82/212 (38%), Positives = 119/212 (56%)
 Frame = -3

Query: 1010 DEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYFDDILIYNKSL 831
            D+ KT F   +G Y +  M FG+ NAP++F R M  I    I   + ++ DD  +Y K+ 
Sbjct: 2013 DQSKTTFTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEDIMEIFMDDFSVYGKTF 2072

Query: 830  YEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSRGIMVDEEKIKAS*DWPK 651
               L +L  VL+  +++ L  N +KC F  R+ I LG  V+ RGI  D  KI      P 
Sbjct: 2073 GHCLQNLDKVLQRCQEKDLVLNWEKCHFMVREGIVLGHRVSERGIEFDRAKIDVIDQLPP 2132

Query: 650  PTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRAFEFLKERLAH 471
            P +   +RSF G A F RRF+ DFST+A PL  ++ K   F++ +A  ++FE LK+ L  
Sbjct: 2133 PVNIKGIRSFLGHADFYRRFIKDFSTIARPLTNLLAKDTPFEFDDACLKSFEILKKALDS 2192

Query: 470  APLLALPDFTKVFEIECDASGVGIGAILMQER 375
             P++  PD+T  FEI CDAS   +GA+L Q +
Sbjct: 2193 GPIIQPPDWTLPFEIMCDASDFAVGAVLGQTK 2224


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  672 bits (1735), Expect = 0.0
 Identities = 313/472 (66%), Positives = 390/472 (82%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ D+FP E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 713  LQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDK 772

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPC++P+L V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 773  GYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVF 832

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTF+RLMN +LRAFIG
Sbjct: 833  SKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIG 892

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++S+ +H  HLRAV + LR E+L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 893  RFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQ 952

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W
Sbjct: 953  GIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTW 1012

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
              AQ  AF+ LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +   +FS KLS
Sbjct: 1013 AAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLS 1072

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKEL+ALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 1073 GPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEF 1132

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR Y ++S LD KI G E +KE Y HD DF
Sbjct: 1133 IESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDF 1184


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  671 bits (1732), Expect = 0.0
 Identities = 314/472 (66%), Positives = 389/472 (82%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ D+FP E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 713  LQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDK 772

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPC+VP+L V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 773  GYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVF 832

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 833  SKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 892

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 893  RFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 952

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W
Sbjct: 953  GIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTW 1012

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
              AQ  AF+ LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 1013 AAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLS 1072

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKEL+ALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q K N++HA W+EF
Sbjct: 1073 GPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKHNRRHAKWVEF 1132

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR Y ++S LD KI G E +KE Y HD DF
Sbjct: 1133 IESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDF 1184


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score =  671 bits (1732), Expect = 0.0
 Identities = 323/474 (68%), Positives = 393/474 (82%)
 Frame = -3

Query: 1424 QMEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLS 1245
            +++E+EDVFP ++P GL PI GIEHQIDF+PGA++PNR AYRSN EETKELQRQV+ELL+
Sbjct: 164  EVKEYEDVFPNDVPSGLPPIRGIEHQIDFVPGATIPNRLAYRSNLEETKELQRQVEELLT 223

Query: 1244 KKLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNI 1065
            K  +RESM PCA+ +L V KKDG+WRMCVDCRAINNIT+KYR+P+PRLDDML+ELHGS +
Sbjct: 224  KGHVRESMRPCAILVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCV 283

Query: 1064 FSKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFI 885
            F KIDL+SGYHQIRM+EGDEWKTAFKTK+GLYEWLVMPFG+TNA STFMRLMNH+LRAFI
Sbjct: 284  FIKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNHVLRAFI 343

Query: 884  GKFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNS 705
            G+FVVVYFDDIL+Y+K+L EH++HL  VL +LRKEKLYAN+KKC+FC  +++FLG+VV++
Sbjct: 344  GRFVVVYFDDILVYSKNLDEHINHLHCVLAILRKEKLYANLKKCSFCMDKVVFLGYVVSA 403

Query: 704  RGIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQ 525
            +GI VDEEK+KA  +WP P S ++VRSFHGLASF  RFV DFSTLAAPL  I+KKSV F+
Sbjct: 404  KGIEVDEEKLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAAPLTEIVKKSVGFK 463

Query: 524  WGEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKL 345
            WG  QDRAF  +KERL  APLL+LP+F+K FEIECDASG+GI  +LMQE+R  A+FS KL
Sbjct: 464  WGSEQDRAFIEIKERLCGAPLLSLPNFSKTFEIECDASGIGIATVLMQEKRPIAYFSEKL 523

Query: 344  SGAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLE 165
            +GA LNYPTYDKELYAL                          +LKGQ KLN++HA W+E
Sbjct: 524  NGATLNYPTYDKELYAL--------------------------HLKGQDKLNRRHAKWVE 557

Query: 164  FIEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDFA 3
            FIE FPY+++YKQGK N+V +ALSR Y L+STL+AK+LGFE+VKELY +D DFA
Sbjct: 558  FIETFPYVVKYKQGKENIVVNALSRRYALVSTLNAKLLGFEYVKELYANDNDFA 611


>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
          Length = 1215

 Score =  671 bits (1731), Expect = 0.0
 Identities = 316/472 (66%), Positives = 387/472 (81%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            +++++DVFP + P GL PI GIEHQIDF+PGASLPNRPAYR+N  ETKELQRQ       
Sbjct: 412  LQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELQRQ------- 464

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
                               KDGSWRMC DCRAINN+T+KY +P+PRLDDML+ELHGS+IF
Sbjct: 465  -------------------KDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIF 505

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDL+SGYHQIRM EGDEWKTAFKTKHGLYEWLVMPFG+T+APSTFMRLMNH+LRAFIG
Sbjct: 506  SKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIG 565

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
             FV+VYFDDIL+Y++SL EH++HL +VL VLRKE+LYAN+KKCTFC+  L+FLGFVV++ 
Sbjct: 566  IFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSAD 625

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            G+ VDEEK+KA  DWP P +  +VRSFHGLA F RRF  DFST+ APL  ++KK V F+W
Sbjct: 626  GVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKW 685

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
             +AQ+ AF+ LK++L +AP+L L +F K FEIECDASG+GIGA+LMQ++++ AFFS KL 
Sbjct: 686  EKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLG 745

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            GA LNYPTYDKELYALV AL+ WQHYLWPK F+I+T H+SLK+LKGQQKLNK+HA W+EF
Sbjct: 746  GATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEF 805

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE F Y+++YK+GK NVVADALS+ YTL+STL+ K++GFE +KE+Y  D DF
Sbjct: 806  IETFAYVIKYKKGKDNVVADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDF 857


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  671 bits (1731), Expect = 0.0
 Identities = 317/472 (67%), Positives = 387/472 (81%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++EF DVFP ++P GL PI GIEHQID IPGASLPNR  YR+N EETKE+ RQV ELL K
Sbjct: 744  LQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDK 803

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              IRES+SPCAVPI+ V KKDG+ RMCVDCR INNITI+ R+P+PRLDDML+EL GS IF
Sbjct: 804  GYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRXRHPIPRLDDMLDELSGSIIF 863

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 864  SKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 923

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++SL +HLDHLRAV   LR  +L+ N+ KCTFC+ ++ FLG+VV  +
Sbjct: 924  RFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQ 983

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ KI+A   WP+P + +QVRSF G A F RRFV DFST+AAPL  + KK V + W
Sbjct: 984  GIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSW 1043

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G AQ+ AF  LK++L HAPLL LPDF K FE+ECDASG+G+G +L+Q+ +  A+FS KLS
Sbjct: 1044 GTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLS 1103

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK++K Q KLN++HA W+EF
Sbjct: 1104 GPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEF 1163

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR YT++S LD KI G E +K+ Y+HD DF
Sbjct: 1164 IETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADF 1215


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  670 bits (1729), Expect = 0.0
 Identities = 314/472 (66%), Positives = 389/472 (82%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ D+FP E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 713  LQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDK 772

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPC+VP+L V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 773  GYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVF 832

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 833  SKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 892

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FL +VV  +
Sbjct: 893  RFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQ 952

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A  +WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W
Sbjct: 953  GIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTW 1012

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
              AQ  AF+ LK++L HAPLL LPDF K FE ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 1013 AAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLS 1072

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKEL+ALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 1073 GPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEF 1132

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR Y ++S LD KI G E +KE Y HD DF
Sbjct: 1133 IESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDF 1184


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  668 bits (1724), Expect = 0.0
 Identities = 316/472 (66%), Positives = 386/472 (81%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++EF DVFP ++P GL PI GIEHQID IPGASLPNR  YR+N EETKE+ RQV ELL K
Sbjct: 729  LQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDK 788

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              IRES+SPCAVPI+ V KKDG+ RMCVDCR INNITI+YR+P+PRLDDML+EL GS IF
Sbjct: 789  GYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIF 848

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SK+DLRSGYHQIRM+ GDEWKT FKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 849  SKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 908

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY+KSL EHL+HLRAV   LR  +L+ N+ KCTFC+ ++ FLG+VV  +
Sbjct: 909  RFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQ 968

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ KI+A   WP P + +QVRSF GLA F RRFV DFST+AAPL  + KK V F W
Sbjct: 969  GIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVW 1028

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
            G AQ+ AF  LK++L +APLL LP+F K FE+ECDASG+G+G +L+Q+ +  A+FS K S
Sbjct: 1029 GTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFS 1088

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKELYALV  L+TWQHYLWPKEF+I++ H+SLK++K Q KLN++HA W+EF
Sbjct: 1089 GPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEF 1148

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR YT++S LD KI G E +K+ Y+HD +F
Sbjct: 1149 IETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDAEF 1200


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  668 bits (1724), Expect = 0.0
 Identities = 312/472 (66%), Positives = 388/472 (82%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ D+FP E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQ+ ELL K
Sbjct: 346  LQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQELLDK 405

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPC+VP+L V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 406  GYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVF 465

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
             KIDLRSGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 466  YKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 525

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 526  RFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 585

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W
Sbjct: 586  GIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTW 645

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
              AQ  AF+ LK++L HAPLL LPDF K  E+ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 646  AAAQRNAFDTLKDKLTHAPLLQLPDFNKTLELECDASGIGLGGVLLQEGKPVAYFSEKLS 705

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDKEL+ALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 706  GPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEF 765

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR Y ++S LD KI G E +KE Y HD DF
Sbjct: 766  IESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDF 817


>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
          Length = 1239

 Score =  666 bits (1718), Expect = 0.0
 Identities = 313/471 (66%), Positives = 387/471 (82%)
 Frame = -3

Query: 1418 EEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKK 1239
            +E+ D+F  E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K 
Sbjct: 492  KEYADIFSKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKG 551

Query: 1238 LIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIFS 1059
             +RES+SPCAVP+L V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +FS
Sbjct: 552  YVRESLSPCAVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFS 611

Query: 1058 KIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGK 879
            KIDLRSGYHQIRM+ GDEWKTAFKTK  LYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+
Sbjct: 612  KIDLRSGYHQIRMKLGDEWKTAFKTKFSLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR 671

Query: 878  FVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSRG 699
            FVVVYFD ILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG+VV  +G
Sbjct: 672  FVVVYFDGILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQG 731

Query: 698  IMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWG 519
            I VD+ K++A   WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W 
Sbjct: 732  IEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWA 791

Query: 518  EAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLSG 339
             AQ  AF+ LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLSG
Sbjct: 792  AAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSG 851

Query: 338  AALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEFI 159
             +LNY TYDKEL+ALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EFI
Sbjct: 852  PSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFI 911

Query: 158  EMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            E FPY++++K+GK NV+A+ALSR YT++S LD KI G E +KE Y HD DF
Sbjct: 912  ESFPYVIKHKKGKENVIANALSRRYTMLSQLDFKIFGLETIKEQYAHDDDF 962


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  665 bits (1717), Expect = 0.0
 Identities = 311/472 (65%), Positives = 387/472 (81%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ D+FP E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 609  LQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDK 668

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPC+VP+L V KKDGSWRMCVDCRAINNITI+YR+P+PRLDDML+EL GS +F
Sbjct: 669  GYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVF 728

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDL SGYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG
Sbjct: 729  SKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIG 788

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG+VV  +
Sbjct: 789  RFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 848

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP PT+ +QVRSF GLA F R FV DFST+AAPL  + K++V F W
Sbjct: 849  GIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAAPLHELTKRNVTFTW 908

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
              AQ  AF+ LK++L HAPLL LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 909  AAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLS 968

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDK+L+ALV  L+TWQHYLWPKEF+I++ H+SLK+++ Q KLN++HA W+EF
Sbjct: 969  GPSLNYSTYDKQLFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEF 1028

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ DALSR Y ++S LD KI G E +KE Y HD DF
Sbjct: 1029 IESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQYAHDDDF 1080


>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1392

 Score =  655 bits (1690), Expect = 0.0
 Identities = 308/472 (65%), Positives = 382/472 (80%)
 Frame = -3

Query: 1421 MEEFEDVFPYEMPDGLLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSK 1242
            ++E+ D+FP E+P GL PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K
Sbjct: 562  LQEYADIFPKEVPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDK 621

Query: 1241 KLIRESMSPCAVPILQVLKKDGSWRMCVDCRAINNITIKYRYPVPRLDDMLEELHGSNIF 1062
              +RES+SPCAVP+L V KKDGSWRMCVDCRAI+NI I+YR+P+PRLDDML+EL GS +F
Sbjct: 622  GYVRESLSPCAVPVLLVPKKDGSWRMCVDCRAIDNIIIRYRHPIPRLDDMLDELSGSLVF 681

Query: 1061 SKIDLRSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIG 882
            SKIDLRSGYHQIRM+ GDEWK AFKTK GLYEWLVMPFG+TNAPSTFMRLMN +L AFIG
Sbjct: 682  SKIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLCAFIG 741

Query: 881  KFVVVYFDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFVVNSR 702
            +FVVVYFDDIL Y++S+ +H  HLRAV + LR  +L+ N++KCTFC  ++ FLG+VV  +
Sbjct: 742  RFVVVYFDDILTYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCIDRVSFLGYVVTPQ 801

Query: 701  GIMVDEEKIKAS*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQW 522
            GI VD+ K++A   WP PT+ +QVRSF G+A F RRFV DFST+AAPL  + K++V F W
Sbjct: 802  GIEVDQAKVEAIHSWPVPTTITQVRSFLGVAGFYRRFVKDFSTIAAPLHELTKRNVTFTW 861

Query: 521  GEAQDRAFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAILMQERRMNAFFSNKLS 342
              AQ   F+ LK++L HAPL  LPDF K FE+ECDASG+G+G +L+QE +  A+FS KLS
Sbjct: 862  AVAQRNTFDTLKDKLTHAPLFQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLS 921

Query: 341  GAALNYPTYDKELYALVWALKTWQHYLWPKEFIIYTYHKSLKYLKGQQKLNKQHACWLEF 162
            G +LNY TYDK+L+ALV  L+TWQHYLWPKEF+I + H+SLK+++ Q KLN +HA W+EF
Sbjct: 922  GPSLNYSTYDKKLFALVQTLETWQHYLWPKEFVIRSDHESLKHIRSQAKLNHRHAKWVEF 981

Query: 161  IEMFPYILRYKQGKTNVVADALSRSYTLISTLDAKILGFEHVKELYLHDLDF 6
            IE FPY++++K+GK NV+ADALSR YT++S LD KI G E +KE Y HD DF
Sbjct: 982  IESFPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKEQYAHDDDF 1033