BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00024750
         (1314 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein A...   198   4e-48
ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein A...   195   4e-47
ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein A...   195   4e-47
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...   189   2e-45
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626...   181   6e-43
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A...   180   1e-42
ref|XP_006485451.1| PREDICTED: uncharacterized protein LOC102622...   172   2e-40
ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group] g...   172   3e-40
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A...   171   6e-40
gb|ABA97040.1| retrotransposon protein, putative, unclassified [...   169   2e-39
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   169   2e-39
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   169   2e-39
ref|XP_006491602.1| PREDICTED: uncharacterized protein LOC102623...   167   7e-39
ref|XP_006492749.1| PREDICTED: uncharacterized protein LOC102612...   166   3e-38
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A...   163   1e-37
gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indi...   162   3e-37
gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza ...   161   6e-37
gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japo...   160   8e-37
gb|AAX94970.1| retrotransposon protein, putative, unclassified [...   160   1e-36
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   160   1e-36

>ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 769

 Score =  198 bits (504), Expect = 4e-48
 Identities = 127/412 (30%), Positives = 199/412 (48%), Gaps = 2/412 (0%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            I  GL WRIG+G+  ++++  W+P        S  +L   +TV+ L + +  W +  IR+
Sbjct: 329  IRKGLRWRIGDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDEDQCWRDDVIRQ 388

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F      +ILKIP P  L  D   W +D KG YSVKSGY  A+     +  S+S+E + 
Sbjct: 389  HFHQEDAAQILKIPLPRQLSPDQVLWHYDKKGNYSVKSGYQLALQMKFPNRPSSSKEDNN 448

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             W  IW L IP KV+IF W+A++D++    NL K+ +     C  C  + +T  HSLF C
Sbjct: 449  SWNSIWYLQIPEKVKIFMWRATNDLLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDC 508

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            KA R +WK T     +K  K   +L +   +    S  + E  V   W+IW  R  F+  
Sbjct: 509  KASRKIWKLTTFEEEVKALKCKDVLSLLLALADRRSKTEMELIVAVCWSIWHSRNLFIFQ 568

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQL-QGKITGNRPVVEADRKWQKPPPGHYRLDVDACCN 421
            +       SV   E  +Q+Y+  Q+ Q +   N+ +V + + W+ PP G ++++VDA   
Sbjct: 569  NKKEDFQLSVAGAEAIVQSYKRIQMPQLQAFSNQDLV-SHKHWKCPPAGWFKVNVDAAIK 627

Query: 420  FRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTS 241
                +   G V+R+  GK + A  +    ++     E  A + GL  A      P+IV +
Sbjct: 628  LENQRVGLGIVIRNSEGKFITAAIKPSKWLDRVDYAEAEATRFGLEVAESAGCLPLIVET 687

Query: 240  DSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRL 85
            DS      V A     +    ++ +V+  +  L+  K  H  RT N  AH L
Sbjct: 688  DSKEVTDLVSARKSTKAEIFWIVSEVQDTMKRLKHVKIQHSPRTCNGFAHTL 739


>ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform X2
            [Citrus sinensis]
          Length = 765

 Score =  195 bits (495), Expect = 4e-47
 Identities = 123/411 (29%), Positives = 194/411 (47%), Gaps = 1/411 (0%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            I  GL WRIG+G+  ++++  W+P        S  +L   +TV+ L + +  W +  IR+
Sbjct: 329  IRKGLRWRIGDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDEDQCWRDDVIRQ 388

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F      +ILKIP P  L  D   W +D KG YSVKSGY  A+     +  S+S+E + 
Sbjct: 389  HFHQEDAAQILKIPLPRQLSPDQVLWHYDKKGNYSVKSGYQLALQMKFPNRPSSSKEDNN 448

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             W  IW L IP KV+IF W+A++D++    NL K+ +     C  C  + +T  HSLF C
Sbjct: 449  SWNSIWYLQIPEKVKIFMWRATNDLLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDC 508

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            KA R +WK T     +K  K   +L +   +    S  + E  V   W+IW  R  F+  
Sbjct: 509  KASRKIWKLTTFEEEVKALKCKDVLSLLLALADRRSKTEMELIVAVCWSIWHSRNLFIFQ 568

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNF 418
            +       SV   E  +Q+Y+  Q+      +   + + + W+ PP G ++++VDA    
Sbjct: 569  NKKEDFQLSVAGAEAIVQSYKRIQMPQLQAFSDQDLVSHKHWKCPPAGWFKVNVDAAIKL 628

Query: 417  RENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTSD 238
               +   G V+R+  GK + A  +    ++     E  A + GL  A      P+IV +D
Sbjct: 629  ENQRVGLGIVIRNSEGKFITAAIKPSKWIDRVDYAEAEATRFGLEVAESAGCLPLIVETD 688

Query: 237  SVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRL 85
            S      V A     +    ++ +V+  +  L+  K  H  R  N  AH L
Sbjct: 689  SKEVTDLVSARKSTKAEIFWIVSEVQDTMKRLKHVKLQHSPRACNGFAHTL 739


>ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform X1
            [Citrus sinensis]
          Length = 968

 Score =  195 bits (495), Expect = 4e-47
 Identities = 123/411 (29%), Positives = 194/411 (47%), Gaps = 1/411 (0%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            I  GL WRIG+G+  ++++  W+P        S  +L   +TV+ L + +  W +  IR+
Sbjct: 532  IRKGLRWRIGDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDEDQCWRDDVIRQ 591

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F      +ILKIP P  L  D   W +D KG YSVKSGY  A+     +  S+S+E + 
Sbjct: 592  HFHQEDAAQILKIPLPRQLSPDQVLWHYDKKGNYSVKSGYQLALQMKFPNRPSSSKEDNN 651

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             W  IW L IP KV+IF W+A++D++    NL K+ +     C  C  + +T  HSLF C
Sbjct: 652  SWNSIWYLQIPEKVKIFMWRATNDLLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDC 711

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            KA R +WK T     +K  K   +L +   +    S  + E  V   W+IW  R  F+  
Sbjct: 712  KASRKIWKLTTFEEEVKALKCKDVLSLLLALADRRSKTEMELIVAVCWSIWHSRNLFIFQ 771

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNF 418
            +       SV   E  +Q+Y+  Q+      +   + + + W+ PP G ++++VDA    
Sbjct: 772  NKKEDFQLSVAGAEAIVQSYKRIQMPQLQAFSDQDLVSHKHWKCPPAGWFKVNVDAAIKL 831

Query: 417  RENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTSD 238
               +   G V+R+  GK + A  +    ++     E  A + GL  A      P+IV +D
Sbjct: 832  ENQRVGLGIVIRNSEGKFITAAIKPSKWIDRVDYAEAEATRFGLEVAESAGCLPLIVETD 891

Query: 237  SVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRL 85
            S      V A     +    ++ +V+  +  L+  K  H  R  N  AH L
Sbjct: 892  SKEVTDLVSARKSTKAEIFWIVSEVQDTMKRLKHVKLQHSPRACNGFAHTL 942


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score =  189 bits (480), Expect = 2e-45
 Identities = 127/440 (28%), Positives = 200/440 (45%), Gaps = 5/440 (1%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNG-NNWDEFFIRE 1138
            I+ G  WRIGNG    ++KD WIP        S   L   +TV  L +  NNW+   + +
Sbjct: 895  IQKGARWRIGNGSNILVYKDNWIPRPDTFKPISPPTLPIDTTVGELMDDENNWNVAKLNQ 954

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F+    + ILKIP P S + D   W +D  G YSVKSGY  A+      E S S   SK
Sbjct: 955  HFMQEDTEAILKIPLPRSQKVDEMMWHYDKHGEYSVKSGYQIALKLKAPDEPSNSGSNSK 1014

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             WK +W++ +P K++IF W+A+ +++    NL K+    +  C  C+   +T  H+L  C
Sbjct: 1015 RWKAVWSMELPEKMKIFMWRAARNLLPTAENLWKRKCLKDPICQGCNREVETVRHALLDC 1074

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            KA R +W        +   +   +L+  + +       + E  +   WAIW  R   +  
Sbjct: 1075 KAARKIWYHATSSVQISNAQNQDILEFIYEVWSTWGKTKAEQTIAFCWAIWFARNKRIFE 1134

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNF 418
                    S    E  L+AY  A+       +       +KW+ PP    +++VDA  N 
Sbjct: 1135 GKKSDPRASAAKAESLLEAYHRARKPDASHIHNVKRIVQKKWEPPPGNFLKVNVDAAINN 1194

Query: 417  RENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTSD 238
            R+     G V++D  GKI+ A  +++ +  G    E  A++ GL  A   +   +I+ +D
Sbjct: 1195 RDQVAGLGAVIKDPSGKIVAAGTKQVPLREGVSFAEAEAMEWGLQIARELSLSALIMETD 1254

Query: 237  SVLAVQAVMANHEDLSYNGV--LLQDVRHFLANLRVTKFTHIRRTANSVAHRLXXXXXXX 64
                V   + N+   S  G+  ++ D++    + +  KF HI RT N+ AH L       
Sbjct: 1255 CKEVVD--LLNNTKGSRTGISWVISDIQEQRRDFKEVKFRHIPRTCNTCAHSLAKL---- 1308

Query: 63   XXXFCWAVGETPS--WVDEI 10
                  AVG   S  W+D I
Sbjct: 1309 ------AVGANTSAVWLDHI 1322


>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
          Length = 1452

 Score =  181 bits (459), Expect = 6e-43
 Identities = 125/437 (28%), Positives = 186/437 (42%), Gaps = 1/437 (0%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            I+ G+ WRIG+G+   ++KD+WIP        S   L   + V  L +  N W    + +
Sbjct: 1012 IKKGVRWRIGDGKKVLVYKDKWIPRPATFQPISPKTLPHETVVADLIDSENKWRVDRLEQ 1071

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F+    + ILKI  P+    D   W FD KG YSVKSGY  A+     +E  +S   S+
Sbjct: 1072 HFMKEDIEAILKILLPSGKEEDEVLWHFDKKGEYSVKSGYQLALNQNFPNEPESSNSSSR 1131

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             WK  W L +P KV+IF W+A  +I+    NL K+       C  C    +T SH L  C
Sbjct: 1132 LWKIPWMLDLPEKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIEC 1191

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            KA R +W    L     +            M    S  + E  + + W IW  R  F+  
Sbjct: 1192 KAARKIWDLAPLIVQPSKDHNQDFFSAIQEMWSRSSTAEAELMIVYCWVIWSARNKFIFE 1251

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNF 418
                         +  L+AYQ     G + G +      +KW+ P     +L+VDA  + 
Sbjct: 1252 GKKSDSRFLAAKADSVLKAYQRVSKPGNVHGAKDRGIDQQKWKPPSQNVLKLNVDAAVST 1311

Query: 417  RENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTSD 238
            ++ K   G +VRD  GKIL    ++          E  A+  GL  A+  +   +IV SD
Sbjct: 1312 KDQKVGLGAIVRDAEGKILAVGIKQAQFRERVSLAEAEAIHWGLQVANQISSSSLIVESD 1371

Query: 237  SVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRLXXXXXXXXX 58
                V+ +       +    +L DVR      +  +F+ I RT N+ AH L         
Sbjct: 1372 CKEVVELLNNTKGSRTEIHWILSDVRRESKEFKQVQFSFIPRTCNTYAHALAKFALRNSS 1431

Query: 57   XFCWAVGETPSWVDEIV 7
               W VG  P+ V  ++
Sbjct: 1432 TDVW-VGTFPAEVQNVL 1447


>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 765

 Score =  180 bits (457), Expect = 1e-42
 Identities = 125/437 (28%), Positives = 186/437 (42%), Gaps = 1/437 (0%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            I+ G+ WRIG+G+   ++KD+WIP        S   L   + V  L +  N W    + +
Sbjct: 325  IKKGVRWRIGDGKKVLVYKDKWIPRPATFQPISPKTLPHETVVADLIDSENKWRVDRLEQ 384

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F+    + ILKI  P+    D   W FD KG YSVKSGY  A+     +E  +S   S+
Sbjct: 385  HFMKEDIEAILKILLPSGKEEDEVLWHFDKKGEYSVKSGYQLALNQNFPNEPESSNSSSR 444

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             WK  W L +P KV+IF W+A  +I+    NL K+       C  C    +T SH L  C
Sbjct: 445  LWKIPWMLDLPEKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIEC 504

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            KA R +W    L     +            M    S  + E  + + W IW  R  F+  
Sbjct: 505  KAARKIWDLAPLIVQPSKDHNQDFFSAIQEMWSRSSTAEAELMIVYCWVIWSARNKFIFE 564

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNF 418
                         +  L+AYQ     G + G +      +KW+ P     +L+VDA  + 
Sbjct: 565  GKKSDSRFLAAKADSVLKAYQRVSKPGNVHGAKDRGIDQQKWKPPSQNVLKLNVDAAVST 624

Query: 417  RENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTSD 238
            +  K   G +VRD  GKIL    ++          E  A+  GL  A+  +   +IV SD
Sbjct: 625  KXQKVGLGAIVRDAEGKILAVGIKQAQFRERVSLAEAEAIHWGLQVANQISSSSLIVESD 684

Query: 237  SVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRLXXXXXXXXX 58
                V+ +       +    +L DVR    + +  +F+ I RT N+ AH L         
Sbjct: 685  CKEVVELLNNTKGSRTEIHWILSDVRRESKDFKQVQFSFIPRTCNTYAHALAKFALRNSS 744

Query: 57   XFCWAVGETPSWVDEIV 7
               W VG  P+ V  ++
Sbjct: 745  TDVW-VGTFPAEVQNVM 760


>ref|XP_006485451.1| PREDICTED: uncharacterized protein LOC102622884 [Citrus sinensis]
          Length = 1160

 Score =  172 bits (437), Expect = 2e-40
 Identities = 112/409 (27%), Positives = 183/409 (44%), Gaps = 2/409 (0%)
 Frame = -1

Query: 1305 GLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRENFL 1129
            G  WRIGNG+   I K  WIP            +   + V+ L NG N WDE  I ++F 
Sbjct: 691  GSRWRIGNGQDVHIHKANWIPKPFTFKPVIKPTMPSEALVSELINGENCWDEELIYKHFD 750

Query: 1128 SFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSKWWK 949
                D I +IP P  LR D   W F   G Y+VKSGY  A+        S+SE     W 
Sbjct: 751  KMDADVITQIPLPRRLREDELIWHFGKSGQYTVKSGYQRALKIRFPAMPSSSESSKNEWN 810

Query: 948  FIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYCKAI 769
             IW+L++P K+RIF W+A+ +++ +  NL K+ +     C +C    +   H+L  CKA 
Sbjct: 811  IIWSLALPKKIRIFVWRAAKNLLPSAENLWKRKIVQEPTCQLCKMGIENVFHALVDCKAA 870

Query: 768  RHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHAHDD 589
            + +W+ +  +  ++      +L +   +K+  S    + F    WA W  R  +L     
Sbjct: 871  KKVWRLSLFYIDIQAAPGQDILSLLHGVKRMRSNADVDLFAVMLWAKWNARNQWLFKGKR 930

Query: 588  RQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNFREN 409
                  V   E  ++AY+  Q    ++  +    A   W  P  G  +++ DA  N  +N
Sbjct: 931  ENPQSVVAKAEAVMEAYKRVQPSADVSHGKQQKVAQLGWNPPQEGFVKINTDAATNSEKN 990

Query: 408  KFATGGVVRDYRGKILLAFGRRMSVMNGALE-GELLALKDGLWQASLNNFGPIIVTSDSV 232
                G V+RD  G++  A   ++S  +G++   E  A++ GL  A   +   +I+ SDS 
Sbjct: 991  LAGLGAVIRDENGQV-TATAIKVSKFHGSVAYAEAEAMEWGLQVAKDAHVKDVIMESDSQ 1049

Query: 231  LAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRL 85
              V  V       S    ++ +++    +       +  R+ N++AH L
Sbjct: 1050 EVVSLVNNRQGSRSEIYWVVLEIQKLKESFDHVSCVYTHRSCNAIAHSL 1098


>ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group]
            gi|255677791|dbj|BAH93942.1| Os07g0501200 [Oryza sativa
            Japonica Group]
          Length = 620

 Score =  172 bits (436), Expect = 3e-40
 Identities = 129/435 (29%), Positives = 198/435 (45%), Gaps = 28/435 (6%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            ++ G+ WR+GNG + RI++D W+P    +   +         V  L N N  WD   I++
Sbjct: 159  LKKGIIWRVGNGHSIRIWRDPWLPRDFSRRPITRKGNCRIKWVPDLLNDNGEWDLERIQQ 218

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSE--EM 964
            +F     D ILKI P  S   D   W  D  G++SV+S YH A+    ++  S+S   ++
Sbjct: 219  HFNQIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAYHLAVSLANVNSSSSSSGHDL 278

Query: 963  SKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLF 784
            SK WK +W  +IP KV+IF WKA+ + +A   N K + +     CSIC    +  +H+L 
Sbjct: 279  SKAWKLVWNCNIPQKVKIFAWKAATNSLATLQNKKTRRLEPMAICSICGREEEDVAHALC 338

Query: 783  YCKAIRHLWKQTGLWGLLKQGKE-----GALLDIGWWMKQNLSV---KQFEAFVCHTWAI 628
             C         T LW  L+  K+     GA      W+   L +   ++   F+   W I
Sbjct: 339  RCP------HATNLWLSLRSSKDISFEAGASWSGSGWILDQLGLIAKEEGAMFLMLLWRI 392

Query: 627  WKERQCFLHAHDDRQLSQSVQWVEDFL-------QAYQAAQLQGKI----------TGNR 499
            W  R    H      +S S +++  ++       Q  +A   +GK           T   
Sbjct: 393  WYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFPRADFAKGKFVVSNLGCMKGTSQV 452

Query: 498  PVVEADRKWQKPPPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGAL 319
            P  +    W+KP PG  +L+VD   + R      G V+R+  G ++  F   MS   GAL
Sbjct: 453  PDPKVLNHWEKPNPGWMKLNVDGSFDARYGSGGIGAVLRNSAGSLI--FCGNMSRCGGAL 510

Query: 318  EGELLALKDGLWQASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLR 139
            E ELLA ++G+  A      P IV +DS+  ++ V A   D S    L+++VR  L+  R
Sbjct: 511  EAELLACREGIIMALQWTLLPFIVETDSLELLKLVGAGSSDRSELAFLVKEVRDPLSGNR 570

Query: 138  VTKFTHIRRTANSVA 94
                  I R  N V+
Sbjct: 571  EIIIRKIHRENNCVS 585


>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 1152

 Score =  171 bits (433), Expect = 6e-40
 Identities = 115/452 (25%), Positives = 207/452 (45%), Gaps = 16/452 (3%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPT----------IHGKIVKSATALDDSSTVNTLCNGN 1165
            ++ GL +++GNGE   ++ D W+P           +HG        L +  T        
Sbjct: 676  LQQGLRFQVGNGENIHLWDDPWLPLPYTFKPFSLPMHGSEGMRVCELIEEGT-------G 728

Query: 1164 NWDEFFIRENFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHE 985
             W+E+ + E F     + ILKIP   +   D   W FD KG Y+VKSGY        ++ 
Sbjct: 729  GWNEWLLEELFTPMESEIILKIPLSLNGGEDRLVWHFDNKGCYNVKSGYFVGRLLDGLNR 788

Query: 984  HSTSEEM----SKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPV-NGDCSIC 820
             ++  +     S+ W  +W   +PPKVR+  W+     + ++  L KK V + + +C  C
Sbjct: 789  KASGSDSDVQWSRLWCKLWRTQVPPKVRMHAWRLVKGTLPSRAALVKKQVQLPDVNCVFC 848

Query: 819  HFNSDTTSHSLFYCKAIRHLWKQTGLWGLLKQGKEGALLDIGWW-MKQNLSVKQFEAFVC 643
              N + + H    C+A++  W+Q G+  +  +      +++ +W M + LS ++ E F+ 
Sbjct: 849  STNVEDSLHLFKNCEALQPFWQQ-GMVQIHPRTHPSISVEVWFWDMVEMLSGEKLEGFLM 907

Query: 642  HTWAIWKERQCFLHAHDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKP 463
              W IW ER   +       ++  + W    L  Y+    +    G R   ++  KW  P
Sbjct: 908  ALWVIWVERNNMVWRGQFYNITNMMDWSSSLLLEYKHCHQRS--VGTRKKNKS--KWTCP 963

Query: 462  PPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLW 283
            P G  R+++D      E +   G V+RD++G  + +  R       A+  E+ AL+ GL 
Sbjct: 964  PSGRLRVNIDGSFAHEEGRGGVGVVIRDHKGACVASLARPFPNAASAIHMEVEALRAGLL 1023

Query: 282  QASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTAN 103
                  +  + V SD +  VQA+  + ED S  G +++D + +++     +  H+ R AN
Sbjct: 1024 VCVQQGWRDVEVESDCMNLVQAMQTDGEDFSMVGRIIEDCQRYVSAFNFFQLQHVCREAN 1083

Query: 102  SVAHRLXXXXXXXXXXFCWAVGETPSWVDEIV 7
            SVA+RL            +++ ETP+ + +++
Sbjct: 1084 SVANRLAHFARCNSYDD-FSLDETPAIIQDVL 1114


>gb|ABA97040.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1913

 Score =  169 bits (428), Expect = 2e-39
 Identities = 121/429 (28%), Positives = 196/429 (45%), Gaps = 34/429 (7%)
 Frame = -1

Query: 1314 IEHGLS-------WRIGNGETARIFKDQWIPTIHG-KIVKSATALDDSSTVNTLCNGNNW 1159
            IEHGL+       WRIGNG + RI++D WIP  H  + + +          + L    +W
Sbjct: 1486 IEHGLALLKKGIVWRIGNGRSVRIWRDPWIPRDHSCRPITTKRNCRVKWVSDLLGQDGSW 1545

Query: 1158 DEFFIRENFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHS 979
            D   +   FL    DEILKI     L  D   W  D  G +SV+S Y  A+      E S
Sbjct: 1546 DVQKVSRVFLPIDADEILKIRTSVRLEEDFLSWHPDRLGQFSVRSAYKLAISLDYADESS 1605

Query: 978  TS--EEMSKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSD 805
            +S  +   K W  IW  ++P KV++F W+A+++ +A Q N KK+++  +  C IC   ++
Sbjct: 1606 SSSGQNPQKIWDLIWKCNVPQKVKVFCWRAANNCLANQENKKKRNLERSEICCICGNETE 1665

Query: 804  TTSHSLFYCKAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQ--NLSVKQFEAFVCHTWA 631
              SH+L  C    HLW+     G L     G      W+  Q  N   ++        W 
Sbjct: 1666 DVSHALSRCPHAVHLWEAMKAAGSLSLNVAGNATGGSWFFDQIENTPAEERMMLCMMLWR 1725

Query: 630  IWKERQCFLHAHDDRQLSQSVQWVEDFLQA-------------------YQAAQLQGKIT 508
            IW  R    H      ++ S +++E +  +                    Q  +++ +  
Sbjct: 1726 IWFVRNELYHGKVPPPIAVSKRFLESYCSSLLEIKQHPHADVVRGKHVVQQPTRMRSEAN 1785

Query: 507  GNRPVVEADRKWQKPPPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMN 328
              R VV A  +W+KP  G  +L+VD   +   +K   G V+RD  G ++ +    +   +
Sbjct: 1786 HLRRVVPA--RWEKPQMGWMKLNVDGSYDSNSSKGGIGVVLRDSVGTVIFSACGFLERCS 1843

Query: 327  GALEGELLALKDGLWQASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFL- 151
              LE ELLA K+G+  A      PII+ SD ++AV  + +  +++S    L++D+R  + 
Sbjct: 1844 SPLESELLACKEGINLALQWTLLPIILESDCLIAVNMIQSVKKEMSQLAYLVRDIRELMM 1903

Query: 150  --ANLRVTK 130
               ++RV+K
Sbjct: 1904 GGRDIRVSK 1912


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  169 bits (428), Expect = 2e-39
 Identities = 114/424 (26%), Positives = 191/424 (45%), Gaps = 17/424 (4%)
 Frame = -1

Query: 1305 GLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN--WDEFFIRENF 1132
            G+ W +G+G+T +IF D WIP    ++V + +     +TV+ L N +   WD   IR  F
Sbjct: 936  GVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLF 995

Query: 1131 LSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSE------ 970
               I  EIL+IP       D   W  D  GLYSV+S Y+ A       + S S       
Sbjct: 996  PVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASR 1055

Query: 969  --EMSKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTS 796
              E  K WK +W ++ P K++I  W+A+H+ +A    L+++H+P    C  C+   DT  
Sbjct: 1056 LLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCN-RDDTVE 1114

Query: 795  HSLFYCKAIRHLWKQTGLWGLLKQGKEGALLDIGW---WMKQNLSVKQFEAFVCHTWAIW 625
            H   +C     +W++      +K G+ G      W   ++K+  S       V   W IW
Sbjct: 1115 HVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTF-WHIW 1173

Query: 624  KERQCFLH----AHDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPP 457
            + R    +     H  R + + + +V D +  +    + G+  GN    +A  +WQ PP 
Sbjct: 1174 EARNNTKNNNGTVHPQRVVIKILSYV-DMILKHNTKTVDGQRGGN---TQAIPRWQPPPA 1229

Query: 456  GHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQA 277
              + ++ DA           G ++RD  GK L+A    +S +      E LA++  L  A
Sbjct: 1230 SVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLA 1289

Query: 276  SLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSV 97
                   I++ SD +  ++ +  +  D S  G +++D++   +   +  F H+ R +N  
Sbjct: 1290 KEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLA 1349

Query: 96   AHRL 85
            AH L
Sbjct: 1350 AHSL 1353


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  169 bits (428), Expect = 2e-39
 Identities = 114/424 (26%), Positives = 191/424 (45%), Gaps = 17/424 (4%)
 Frame = -1

Query: 1305 GLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN--WDEFFIRENF 1132
            G+ W +G+G+T +IF D WIP    ++V + +     +TV+ L N +   WD   IR  F
Sbjct: 893  GVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLF 952

Query: 1131 LSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSE------ 970
               I  EIL+IP       D   W  D  GLYSV+S Y+ A       + S S       
Sbjct: 953  PVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASR 1012

Query: 969  --EMSKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTS 796
              E  K WK +W ++ P K++I  W+A+H+ +A    L+++H+P    C  C+   DT  
Sbjct: 1013 LLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCN-RDDTVE 1071

Query: 795  HSLFYCKAIRHLWKQTGLWGLLKQGKEGALLDIGW---WMKQNLSVKQFEAFVCHTWAIW 625
            H   +C     +W++      +K G+ G      W   ++K+  S       V   W IW
Sbjct: 1072 HVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTF-WHIW 1130

Query: 624  KERQCFLH----AHDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPP 457
            + R    +     H  R + + + +V D +  +    + G+  GN    +A  +WQ PP 
Sbjct: 1131 EARNNTKNNNGTVHPQRVVIKILSYV-DMILKHNTKTVDGQRGGN---TQAIPRWQPPPA 1186

Query: 456  GHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQA 277
              + ++ DA           G ++RD  GK L+A    +S +      E LA++  L  A
Sbjct: 1187 SVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLA 1246

Query: 276  SLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSV 97
                   I++ SD +  ++ +  +  D S  G +++D++   +   +  F H+ R +N  
Sbjct: 1247 KEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLA 1306

Query: 96   AHRL 85
            AH L
Sbjct: 1307 AHSL 1310


>ref|XP_006491602.1| PREDICTED: uncharacterized protein LOC102623801 [Citrus sinensis]
          Length = 441

 Score =  167 bits (424), Expect = 7e-39
 Identities = 98/411 (23%), Positives = 186/411 (45%), Gaps = 1/411 (0%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGN-NWDEFFIRE 1138
            ++ GL W+IG+G    I+K  W+P +      S   LD  + V  L + N NW +  I +
Sbjct: 1    MQKGLRWKIGSGNQVCIYKSNWLPRLEAFKPFSPPTLDIQAVVADLIDENQNWKKEMIYQ 60

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
            +F+      I++I  PN+ + D   W +D  G YSVKSGY  A+     +   +S+    
Sbjct: 61   HFMKEDAAMIVRIQLPNTPKPDQYLWHYDKYGQYSVKSGYQIALKLKCPNSPCSSDSSLS 120

Query: 957  WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFYC 778
             W  IWA  +P K++IF W+A  +++    NL ++ +  +  C  C   ++   H+L  C
Sbjct: 121  QWNVIWAAELPEKIKIFMWRAVKNLLPTTSNLWRRKIVGSPICRRCGVKNEDVIHALLDC 180

Query: 777  KAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCFLHA 598
            K  + +W+  G    +++  +  L+ +   +++    K+ E  V   W IW  R  F+  
Sbjct: 181  KVAKKVWRNAGCAEEIEKLVQQDLMAVLVEIQRKKGKKELELIVVLCWTIWYSRNLFIFE 240

Query: 597  HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDACCNF 418
            +       S+   E  L +++  +        +      + W  PP G ++++VDA  N 
Sbjct: 241  NKREDSQLSIARAEANLDSFRRIKKPSSKILEKQQRNRKQVWNPPPCGWFKINVDAAVNV 300

Query: 417  RENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIVTSD 238
            ++     G ++R+  G+++ A  +R      +   E  A+  G+  A    F P+I+ +D
Sbjct: 301  KDQIAGLGVIIRNSNGEVVAAAIQRSFFQLSSTHMEAEAVILGIKSAQRAGFSPMIIETD 360

Query: 237  SVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRL 85
            S   V   ++    ++    ++ D++  + +       +  R  N  AH L
Sbjct: 361  SQEVVDLTLSKKVSITETSWIIADIQESIQSSNQFSIQYTPRECNVTAHDL 411


>ref|XP_006492749.1| PREDICTED: uncharacterized protein LOC102612946 [Citrus sinensis]
          Length = 589

 Score =  166 bits (419), Expect = 3e-38
 Identities = 112/416 (26%), Positives = 187/416 (44%), Gaps = 6/416 (1%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIP---TIHGKIVKSATALDDSSTVNTLCNGN-NWDEFF 1147
            ++  + WRIGNGE  +I    WIP   T    +V+S   L   S V+ L + N  W+E  
Sbjct: 150  LQKWIRWRIGNGEKIQIHSSNWIPKPSTFKPILVQS---LPTESKVSELLDQNLQWNEIM 206

Query: 1146 IRENFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEE 967
            I +NF     + I  IP P + + D   W ++ KG+YSVKSGY  A+        + S  
Sbjct: 207  INQNFAKEDAEIIRNIPLPRTPQEDMVIWHYNKKGIYSVKSGYQLALKIKFSESPAGSTG 266

Query: 966  MSKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSL 787
              + W+ IW L++P K++IF WKA+ +++    NL ++ V     C +C    +   H+L
Sbjct: 267  APQGWQHIWRLNLPEKIKIFVWKATKNLLPMAENLWRRKVLKEPTCHLCKAGCEDVFHAL 326

Query: 786  FYCKAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCF 607
              C+  R +WK T L   +K      +L +      N +  + +      W  W  R   
Sbjct: 327  MECRVARKIWKCTHLENEVKSVIREDMLSVMIGAMNNWAKSEVDYVATIWWVAWHARNKL 386

Query: 606  LHAHDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRLDVDAC 427
            L          SV   +  ++ YQA Q++ + +    V    + W  PP    +++VDA 
Sbjct: 387  LFQGKKLDPIGSVAKGKTVMEVYQAQQVKERESHRNTVKGKMQIWTPPPNNKVKVNVDAA 446

Query: 426  CNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNFGPIIV 247
                      G V+R++RG++L A  + M+        E  A+K G+  A   +   +I+
Sbjct: 447  VKEDRKSAGLGVVIRNHRGQVLAAAVKSMNFQGNIAIAEAHAVKWGMEVAKDLSLSSVII 506

Query: 246  TSDSVLAVQAVMANHEDLSYNGVL--LQDVRHFLANLRVTKFTHIRRTANSVAHRL 85
             +D      A +AN +  +   +L  + D+     + ++  F H+ R  N  AH L
Sbjct: 507  ETDCKNV--ADLANKKVSNRTEILWTMSDIHKSTQDFQLISFQHVPRKCNDFAHFL 560


>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 968

 Score =  163 bits (413), Expect = 1e-37
 Identities = 118/450 (26%), Positives = 196/450 (43%), Gaps = 15/450 (3%)
 Frame = -1

Query: 1305 GLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRENFL 1129
            G+ WRIG+G+  +I+ D+W+PT     V +   +D ++ V+ L +    WD  FI+++FL
Sbjct: 517  GIRWRIGSGDLVKIWGDKWLPTPWSFKVVTPCFMDPNARVSQLMSQPGMWDMNFIKQHFL 576

Query: 1128 SFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTS------EE 967
                ++IL +P  +    D   W F   G +SVKSGY   M    + + S+S        
Sbjct: 577  PVDVEKILAVPLCDGNGGDVAVWHFSDDGRFSVKSGYWFGMEMKRLEKGSSSGSGHVNSN 636

Query: 966  MSKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSL 787
                W  IW L +P KV++F W+A H  +     L K+++  +  C  C    +T  HSL
Sbjct: 637  SINIWSLIWDLLVPNKVKLFLWRACHAFLPCVERLFKRNICSHSGCGRCGEGEETVVHSL 696

Query: 786  FYCKAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCHTWAIWKERQCF 607
             +C+  + +WK T   G+ K  +  +  D+   +    ++K  E F    W +WK+R   
Sbjct: 697  CWCRVAKKVWKCTYWRGVYKSWQISSFADLFGLVAMEGNIKNTELFALICWWLWKDRNEV 756

Query: 606  LHAHDDRQLSQSVQWVEDFLQAYQAAQLQGKIT----GNRPVVEADRKWQKPPPGH---Y 448
             H     +  Q V+   ++ + +    L+ K      GN   V+           H    
Sbjct: 757  FHGKKGLEPRQIVEKCLEWQREFSGVMLRRKNLQMGGGNGVEVQQSHGEVGRSSTHEQAA 816

Query: 447  RLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLN 268
            +L  D  C+   N    G VV    G+++ A    M  +      E LAL  G+      
Sbjct: 817  KLYFDGACDNNTNIVGIGAVVLSDNGELMGAISVPMEAVLKPHIIEALALWHGMKLCRQM 876

Query: 267  NFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHR 88
                + +  D+V  + A+  N  DLS  G ++  VR   A      + H+R+  N +AH 
Sbjct: 877  GVTKLAIAGDAVNVINAIGRNVLDLSDIGGIMDAVRRMKAEFEWVSWKHVRKRQNKIAHT 936

Query: 87   L-XXXXXXXXXXFCWAVGETPSWVDEIVMA 1
            L           FC+  G  P W+ E+++A
Sbjct: 937  LARHALKMVQSMFCYDSG--PPWLHEVIVA 964


>gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indica Group]
          Length = 1300

 Score =  162 bits (410), Expect = 3e-37
 Identities = 120/438 (27%), Positives = 201/438 (45%), Gaps = 28/438 (6%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN-WDEFFIRE 1138
            ++ G+ WR+GNG T RI++D WIP    +   +         V+ L + N  WD   I++
Sbjct: 840  LKQGIIWRVGNGRTIRIWRDPWIPRDFSRRPITHKGTSRVKWVSELLDQNGEWDSHKIQQ 899

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTS--EEM 964
             FL    ++IL I       +D   W  D  G +SV+S YH A+    +   S+S  +E+
Sbjct: 900  IFLPIDVEKILSIHTSRFHENDFVAWHSDKLGRFSVRSAYHLALSLSNVVASSSSSGQEL 959

Query: 963  SKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLF 784
            SK W  +W+  +P KVRIF W+A+ + +A  +N KKK +     CSIC    +  +H+L 
Sbjct: 960  SKAWNQLWSCHVPQKVRIFIWRAASNSLATMVNKKKKRLEHCSMCSICGTEEEDVAHALC 1019

Query: 783  YCKAIRHLWKQTGLWGLLKQGKEGAL-LDIGW----W---MKQNLSVKQFEAFVCHTWAI 628
             C   ++LW+      ++++ K   +  D  W    W   + + +S ++    +   W I
Sbjct: 1020 RCPHAKYLWE------VMRRAKAITVQADRNWTGADWIFDISERISKEERPTLLMMLWRI 1073

Query: 627  WKERQCFLHAH-------DDRQLSQSVQWVEDFLQAYQAAQLQGK---------ITGNRP 496
            W  R    H           R +S  +  + +  Q   A   +GK            N P
Sbjct: 1074 WYVRNEITHGKAAVPAEVSQRFISSYITSLLEIRQFPDANLCKGKHVIRCAAAGAQVNHP 1133

Query: 495  VVEA-DRKWQKPPPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGAL 319
             V +   +W +P  G  +L+VD   + R+     G V+R+  GK++ A    M     AL
Sbjct: 1134 RVNSVPVRWVRPQAGWMKLNVDGSYDPRDGSGGIGAVLRNSEGKLIFAACGSMCRPVSAL 1193

Query: 318  EGELLALKDGLWQASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLR 139
            E EL+A K+G+  A    F PIIV +D +  V+ V    + +S  G L+++++  +   R
Sbjct: 1194 EAELVACKEGIILALQWTFLPIIVETDCLELVKLVAEQGKVMSDLGFLIREIKDLVKGNR 1253

Query: 138  VTKFTHIRRTANSVAHRL 85
                  + R+ +   H L
Sbjct: 1254 EIVINKVTRSQSIGCHFL 1271


>gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza sativa Japonica Group]
            gi|31433076|gb|AAP54636.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 791

 Score =  161 bits (407), Expect = 6e-37
 Identities = 115/458 (25%), Positives = 198/458 (43%), Gaps = 22/458 (4%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGN-NWDEFFIRE 1138
            ++ G+ WR+GNG + RI++D W+P  H +   +  A      V+ L   + +WD   I +
Sbjct: 328  LKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQ 387

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTS--EEM 964
             F +   + IL I   +    D   W  D  G++SV+S Y  A     I E S+S    +
Sbjct: 388  YFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNI 447

Query: 963  SKWWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLF 784
            +K W+ IW   +P KV+IF W+ + + +A  +N KK+ +  +  C IC   ++  +H+L 
Sbjct: 448  NKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALC 507

Query: 783  YCKAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEA--FVCHTWAIWKERQC 610
             C     LW      G +    + ++L   W       + ++E   F+   W  W  R  
Sbjct: 508  RCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNE 567

Query: 609  FLHAHDDRQLSQSVQWVEDFL-------QAYQAAQLQGKITGNRPVVEADRK-------- 475
             +H         S ++++ ++       QA QA  ++GK       ++   K        
Sbjct: 568  LIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQ 627

Query: 474  --WQKPPPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLA 301
              W++P  G  +L+VD   +    K   G ++R+  G I+    + +   N  LE EL A
Sbjct: 628  PCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELRA 687

Query: 300  LKDGLWQASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTH 121
              +GL  A      PI V +D    VQ +     D S    ++ + RH L   RV     
Sbjct: 688  CVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSVLANIIHEARHLLVGERVISIKK 747

Query: 120  IRRTANSVAHRLXXXXXXXXXXFCWAVGETPSWVDEIV 7
            I R+ N ++H L            W +GE+ + +  ++
Sbjct: 748  ICRSQNCISHHLANTARADFLAGFW-LGESCNLISHLL 784


>gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japonica Group]
          Length = 653

 Score =  160 bits (406), Expect = 8e-37
 Identities = 124/466 (26%), Positives = 206/466 (44%), Gaps = 30/466 (6%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN--WDEFFIR 1141
            ++ G+ WRIG G+   I++D WIP  H   V           V  L + NN  WDE  IR
Sbjct: 188  LKKGIIWRIGKGDQLHIWRDNWIPRDHQLRVTGKRTRTCLKWVADLVSPNNQEWDEGLIR 247

Query: 1140 ENFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMS 961
            + F     DEILKI  P S   D   W  +  G+++V+S Y   +G  E H  + +   S
Sbjct: 248  QIFYPPYVDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYK--LGLAEEHRANEAGACS 305

Query: 960  K-------WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDT 802
                     WK IW+  +P KV IF W+ + + +  Q N +K+++  +  C +C    + 
Sbjct: 306  SNGNGDRVLWKNIWSAQVPQKVCIFAWRLAVERLPTQHNKQKRNIVPSARCEVCGAPRED 365

Query: 801  TSHSLFYC---KAIRH----LWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVC 643
              H+   C   KA+R      W        ++QG +  LL     +   L ++     + 
Sbjct: 366  GFHATVVCTKAKALRDELRAFWPIPPEDKFVRQGPDWLLL-----LLDTLDMRNKAQMLL 420

Query: 642  HTWAIWKERQCFLHAHDDRQLSQSVQWVEDFLQAYQ------------AAQLQGKITGNR 499
              W  W  R   +H      +S S+++++ ++Q               AAQ+ G++  N 
Sbjct: 421  MLWRAWHLRNNSVHDTGTLTISGSIRFLQSYVQLLFPIRQKEDPKGKCAAQVPGRLNQNP 480

Query: 498  PVVEAD--RKWQKPPPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNG 325
             V +AD  + W+ PP G  +++VD   +  +N    G + RD  GK LL+  + +     
Sbjct: 481  GVTKADCLQIWEPPPEGWAKINVDGAFSMTDNTGGIGVIARDSEGKALLSSWKYLHRCAD 540

Query: 324  ALEGELLALKDGLWQASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLAN 145
            A + E+LA  +G+  A+     PII+ SD V  +  + A  E+ S    L++  +  + +
Sbjct: 541  AEQVEILACYEGMKLAAEWIRKPIILESDCVTVIGRMTAEDEERSRWTFLIRSAKAVMRS 600

Query: 144  LRVTKFTHIRRTANSVAHRLXXXXXXXXXXFCWAVGETPSWVDEIV 7
            L+  +  H +R  N VAH L            W     PS V +++
Sbjct: 601  LQEVRIQHRKRECNRVAHELAQLAKRTAHCAVWR-DHVPSCVMQVL 645


>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|77550533|gb|ABA93330.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 816

 Score =  160 bits (405), Expect = 1e-36
 Identities = 120/440 (27%), Positives = 199/440 (45%), Gaps = 30/440 (6%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGKIVKSATALDDSSTVNTLCNGNN--WDEFFIR 1141
            ++ G+ WRIG G+   I++D WIP  H   V           V  L + NN  WDE  IR
Sbjct: 188  LKKGIIWRIGKGDQLHIWRDNWIPRDHQLRVTGKRTRTCLKWVADLVSPNNQEWDEGLIR 247

Query: 1140 ENFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMS 961
            + F     DEILKI  P S   D   W  +  G+++V+S Y   +G  E H  + +   S
Sbjct: 248  QIFYPPYVDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYK--LGLAEEHRANEAGACS 305

Query: 960  K-------WWKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDT 802
                     WK IW+  +P KV IF W+ + + +  Q N +K+++  +  C +C    + 
Sbjct: 306  SNGNGDRVLWKNIWSAQVPQKVCIFAWRLAVERLPTQHNKQKRNIVPSARCEVCGAPRED 365

Query: 801  TSHSLFYC---KAIRH----LWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVC 643
              H+   C   KA+R      W        ++QG +  LL     +   L ++     + 
Sbjct: 366  GFHATVVCTKAKALRDELRAFWPIPPEDKFVRQGPDWLLL-----LLDTLDMRNKAQMLL 420

Query: 642  HTWAIWKERQCFLHAHDDRQLSQSVQWVEDFLQAYQ------------AAQLQGKITGNR 499
              W  W  R   +H      +S S+++++ ++Q               AAQ+ G++  N 
Sbjct: 421  MLWRAWHLRNNSVHDTGTLTISGSIRFLQSYVQLLFPIRQKEDPKGKCAAQVPGRLNQNP 480

Query: 498  PVVEAD--RKWQKPPPGHYRLDVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNG 325
             V +AD  + W+ PP G  +++VD   +  +N    G + RD  GK LL+  + +     
Sbjct: 481  GVTKADCLQIWEPPPEGWAKINVDGAFSMTDNTGGIGVIARDSEGKALLSSWKYLHRCAD 540

Query: 324  ALEGELLALKDGLWQASLNNFGPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLAN 145
            A + E+LA  +G+  A+     PII+ SD V  +  + A  E+ S    L++  +  + +
Sbjct: 541  AEQVEILACYEGMKLAAEWIRKPIILESDCVTVIGRMTAEDEERSRWTFLIRSAKAVMRS 600

Query: 144  LRVTKFTHIRRTANSVAHRL 85
            L+  +  H +R  N VAH L
Sbjct: 601  LQEVRIQHRKRECNRVAHEL 620


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  160 bits (404), Expect = 1e-36
 Identities = 121/438 (27%), Positives = 194/438 (44%), Gaps = 9/438 (2%)
 Frame = -1

Query: 1314 IEHGLSWRIGNGETARIFKDQWIPTIHGK-IVKSATALDDSSTVNTLCNGNNWDEFFIRE 1138
            ++ G  W I +G   +++ D W+P    + I+    A  D   V+ L     W E FIR+
Sbjct: 386  LKRGCYWSIASGTKVQVWGDSWLPDSSNRLIITPPVAGFDGIKVDELITEGLWREDFIRD 445

Query: 1137 NFLSFIGDEILKIPPPNSLRHDSRYWRFDAKGLYSVKSGYHAAMGFYEIHEHSTSEEMSK 958
             F++   D IL IP P S R D   W FDA+G Y+ +SGY A   F +      S+  S 
Sbjct: 446  KFMARDADLILSIPLPMSSREDQISWSFDARGEYTARSGYGALRCFRQSTALVASDVDSN 505

Query: 957  W-WKFIWALSIPPKVRIFWWKASHDIIAAQMNLKKKHVPVNGDCSICHFNSDTTSHSLFY 781
            + W  +W ++ PPK+  F W+A+ + +  +  L  +HV     C IC    +TT H+L  
Sbjct: 506  FVWAQLWKVTAPPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVE 565

Query: 780  CKAIRHLWKQTGLWGLLKQGKEGALLDIGWWMKQNLSVKQFEAFVCH---TWAIWKERQC 610
            C A R +W ++GL   + QG  G+ +D   W+    +   F  F  +    W +W  R  
Sbjct: 566  CVAARDVWDESGL--AMLQGNFGSFVD---WLATMFAYCDFVVFAKYLAVCWGLWWRRND 620

Query: 609  FLHA----HDDRQLSQSVQWVEDFLQAYQAAQLQGKITGNRPVVEADRKWQKPPPGHYRL 442
             +      H  + ++     +E +  A +   L   +T    V     KWQKP  G  ++
Sbjct: 621  VVWNGRIWHSQQVVNGCFTMLESWFHANET--LATAVT----VPSYSSKWQKPDYGWIKI 674

Query: 441  DVDACCNFRENKFATGGVVRDYRGKILLAFGRRMSVMNGALEGELLALKDGLWQASLNNF 262
            +VD       +K A G V RD++G+ +  F +           E L +++ L      + 
Sbjct: 675  NVDGA--VFPDKGAIGAVFRDHQGRFMGGFAKPFPHQTLPKVVEALGVREVLSWIHERSR 732

Query: 261  GPIIVTSDSVLAVQAVMANHEDLSYNGVLLQDVRHFLANLRVTKFTHIRRTANSVAHRLX 82
              I+V +D +  VQA+       +  G ++ D    L +L   +  + RR+ANS AH L 
Sbjct: 733  SRIVVETDCLRVVQAIQHKSCPNTSFGFIIVDCLDVLQHLVDVQVVYARRSANSAAHCLA 792

Query: 81   XXXXXXXXXFCWAVGETP 28
                       W  G TP
Sbjct: 793  NGACSFTSLHIW--GYTP 808