BLASTX nr result
ID: Rehmannia22_contig00024580
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00024580
(490 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr... 89 8e-16
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 89 8e-16
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 89 8e-16
gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanth... 88 1e-15
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not... 87 2e-15
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 87 2e-15
ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Popu... 87 2e-15
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Trit... 87 2e-15
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 87 2e-15
tpg|DAA50300.1| TPA: putative DNA-directed RNA polymerase II sub... 87 2e-15
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su... 87 2e-15
dbj|BAJ88548.1| predicted protein [Hordeum vulgare subsp. vulgare] 87 2e-15
ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [S... 87 2e-15
gb|ACN34912.1| unknown [Zea mays] gi|413933608|gb|AFW68159.1| pu... 87 2e-15
>ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
gi|557114913|gb|ESQ55196.1| hypothetical protein
EUTSA_v10024251mg [Eutrema salsugineum]
Length = 1188
Score = 88.6 bits (218), Expect = 8e-16
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT
Sbjct: 1138 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1178
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 88.6 bits (218), Expect = 8e-16
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT
Sbjct: 1137 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 88.6 bits (218), Expect = 8e-16
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT
Sbjct: 1146 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1186
>gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
Length = 733
Score = 87.8 bits (216), Expect = 1e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRM+T
Sbjct: 681 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMMT 721
>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 1193
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1139 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179
>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
brachyantha]
Length = 1184
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1132 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1172
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1137 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
Length = 1195
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
gi|550340301|gb|EEE85647.2| hypothetical protein
POPTR_0004s04320g [Populus trichocarpa]
Length = 1215
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1161 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1201
>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X2 [Setaria italica]
Length = 1190
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1138 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1178
>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X1 [Setaria italica]
Length = 1226
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1174 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1214
>gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]
Length = 1204
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1127 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1167
>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Fragaria
vesca subsp. vesca]
Length = 1191
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1138 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1178
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1137 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>tpg|DAA50300.1| TPA: putative DNA-directed RNA polymerase II subunit family protein
[Zea mays]
Length = 362
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 310 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 350
>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1176 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1216
>dbj|BAJ88548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 263
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 212 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 252
>ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein
SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1166 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1206
>gb|ACN34912.1| unknown [Zea mays] gi|413933608|gb|AFW68159.1| putative
DNA-directed RNA polymerase II subunit family protein
[Zea mays]
Length = 362
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3
Query: 3 NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 125
NSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 310 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 350