BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00024388
         (622 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 412   e-113
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   407   e-111
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   406   e-111
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   406   e-111
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   406   e-111
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   406   e-111
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   406   e-111
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   406   e-111
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   404   e-110
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   364   9e-99
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   338   9e-91
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   270   2e-70
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   253   3e-65
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             251   2e-64
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   251   2e-64
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               240   2e-61
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 239   5e-61
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   238   8e-61
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 238   1e-60
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   237   2e-60

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  412 bits (1059), Expect = e-113
 Identities = 196/207 (94%), Positives = 203/207 (98%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTI 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE+YNC
Sbjct: 228 GHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  407 bits (1047), Expect = e-111
 Identities = 194/207 (93%), Positives = 199/207 (96%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  406 bits (1043), Expect = e-111
 Identities = 194/207 (93%), Positives = 198/207 (95%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  406 bits (1043), Expect = e-111
 Identities = 194/207 (93%), Positives = 198/207 (95%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  406 bits (1043), Expect = e-111
 Identities = 194/207 (93%), Positives = 198/207 (95%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  406 bits (1043), Expect = e-111
 Identities = 194/207 (93%), Positives = 198/207 (95%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  406 bits (1043), Expect = e-111
 Identities = 194/207 (93%), Positives = 198/207 (95%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  406 bits (1043), Expect = e-111
 Identities = 194/207 (93%), Positives = 198/207 (95%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  404 bits (1037), Expect = e-110
 Identities = 193/207 (93%), Positives = 199/207 (96%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLTA    T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNC
Sbjct: 228 GHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDI 314


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  364 bits (935), Expect = 9e-99
 Identities = 175/203 (86%), Positives = 185/203 (91%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP
Sbjct: 108 GPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           +LQTLYATLVLPPE     RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV
Sbjct: 168 RLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 226

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GHLTA   PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNC
Sbjct: 227 GHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNC 286

Query: 82  RTPISKTIMMQMFFYIKSVKEAK 14
           RTPISKT MMQMFFYIKS KEA+
Sbjct: 287 RTPISKTTMMQMFFYIKSGKEAQ 309


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score =  338 bits (866), Expect = 9e-91
 Identities = 158/207 (76%), Positives = 179/207 (86%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GP H D FLNA++EPKDVPRYP DTVI  +  I T +AFMGDTLHFL PSF+T+LFA SP
Sbjct: 108 GPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT 
Sbjct: 168 KLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTA 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           G+L  +   T+TAQRLETKGANHLFIFQRG YLTPERRTFTT   YVTVP+IFLP   N 
Sbjct: 228 GYL-ISESTTVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANA 286

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTPI+KT+ MQ+FFYIKSVKE +ERD+
Sbjct: 287 RTPITKTLAMQIFFYIKSVKECRERDL 313


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  270 bits (691), Expect = 2e-70
 Identities = 130/219 (59%), Positives = 159/219 (72%), Gaps = 12/219 (5%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GP H D F+N+ VEPKD+ RYP+ TV+  +  I T+IAFMGDTLHFL+P FV  LFA SP
Sbjct: 108 GPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
           KL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL V
Sbjct: 168 KLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDV 227

Query: 262 GHLT--AANQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 119
           G +     N P           +TAQR+ETKGANHLF+FQRG   TP+ R+  T   Y+T
Sbjct: 228 GLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYIT 287

Query: 118 VPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           VP +FLP+++N R P+ KTI  QMF YIKSVK+  ERDI
Sbjct: 288 VPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDI 326


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  253 bits (646), Expect = 3e-65
 Identities = 125/213 (58%), Positives = 153/213 (71%), Gaps = 6/213 (2%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPTNIAFMGDTLHFLSPSFVTALFAH 449
           GP   D FLNAH+EPKDV RY  DT+  +     I TN AFMGDTLHFL  + +  +F  
Sbjct: 108 GPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKS 167

Query: 448 SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 269
           SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+
Sbjct: 168 SPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWI 227

Query: 268 TVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 101
            VG    A++      +T+Q LETKGANHLFIFQRG +LTPE R F+T   YVT+P IFL
Sbjct: 228 KVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFL 287

Query: 100 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           P+++N R PI KT   Q+F Y+KSVK   ERDI
Sbjct: 288 PKQFNARLPIKKTTAQQLFLYVKSVKNVTERDI 320


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  251 bits (640), Expect = 2e-64
 Identities = 118/207 (57%), Positives = 147/207 (71%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           G   GD F+N   EPKD  RYP DT+ S +  I T +AFMGDTLHFL P+F+T LF  SP
Sbjct: 108 GTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
            L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL V
Sbjct: 168 HLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GH+ + +   ITAQR+ETK ANHLF+F RG   TP  R+F     Y T+P IFLP  +N 
Sbjct: 228 GHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNS 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTP +KT + QMF Y+KS+K+  E D+
Sbjct: 288 RTPYTKTFLQQMFLYLKSIKKPTETDL 314


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus]
           gi|56792005|gb|AAW30448.1| viral replicase [Hydrangea
           ringspot virus]
          Length = 1386

 Score =  251 bits (640), Expect = 2e-64
 Identities = 118/207 (57%), Positives = 147/207 (71%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           G   GD F+N   EPKD  RYP DT+ S +  I T +AFMGDTLHFL P+F+T LF  SP
Sbjct: 108 GTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 263
            L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL V
Sbjct: 168 HLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDV 227

Query: 262 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 83
           GH+ + +   ITAQR+ETK ANHLF+F RG   TP  R+F     Y T+P IFLP  +N 
Sbjct: 228 GHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNS 287

Query: 82  RTPISKTIMMQMFFYIKSVKEAKERDI 2
           RTP +KT + QMF Y+KS+K+  E D+
Sbjct: 288 RTPYTKTFLQQMFLYLKSIKKPTETDL 314


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  240 bits (613), Expect = 2e-61
 Identities = 118/214 (55%), Positives = 148/214 (69%), Gaps = 7/214 (3%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSP 443
           GP   D F+N  VEPKDV RY +DT+ S +  I T   F+GDTLHFL PSF+T LFA +P
Sbjct: 108 GPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKTVFIGDTLHFLPPSFLTKLFARNP 167

Query: 442 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYD 284
           K+QT+ AT+VLP EALY L SLYP +Y+L+Y +         F Y PGGH GA Y H+  
Sbjct: 168 KIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELK 227

Query: 283 QLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 104
           Q++WL  GH+    +  ITAQ+LETK ANHLFI++RG Y TPE R F T   YVT+P IF
Sbjct: 228 QIDWLRFGHI-IDGKVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIF 286

Query: 103 LPERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           LP ++N R PI KT++MQ+F Y+K+V  AKERDI
Sbjct: 287 LPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDI 320


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  239 bits (610), Expect = 5e-61
 Identities = 118/213 (55%), Positives = 147/213 (69%), Gaps = 6/213 (2%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAH 449
           GP HGD FLNA +EPKDV RY  + +   S    I T +AF+GDTLHFL    +  +F  
Sbjct: 108 GPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGAIREIFTS 167

Query: 448 SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 269
           S KLQTLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 268 TVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 101
            VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 100 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           P++YN R PI KT+  Q+F YIKSVK   ERDI
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  238 bits (608), Expect = 8e-61
 Identities = 118/213 (55%), Positives = 147/213 (69%), Gaps = 6/213 (2%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAH 449
           GP HGD FLNA +EPKDV RY  + +   S    I T +AF+GDTLHFL    +  +F  
Sbjct: 108 GPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTS 167

Query: 448 SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 269
           S KLQTLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 268 TVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 101
            VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 100 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           P++YN R PI KT+  Q+F YIKSVK   ERDI
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  238 bits (606), Expect = 1e-60
 Identities = 118/213 (55%), Positives = 147/213 (69%), Gaps = 6/213 (2%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAH 449
           GP HGD FLNA +EPKDV RY  + +   S    I T +AF+GDTLHFL    +  +F  
Sbjct: 108 GPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTS 167

Query: 448 SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 269
           S KLQTLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 268 TVGHLTAAN----QPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 101
            VG     +    +  +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 100 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           P++YN R PI KT+  Q+F YIKSVK   ERDI
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
           replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  237 bits (605), Expect = 2e-60
 Identities = 117/213 (54%), Positives = 147/213 (69%), Gaps = 6/213 (2%)
 Frame = -1

Query: 622 GPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAH 449
           GP HGD FLNA +EPKDV RY  + +   S    I T +AF+GDTLHFL    +  +F +
Sbjct: 108 GPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTN 167

Query: 448 SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 269
           S KL TLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 268 TVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 101
            VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 100 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
           P++YN R PI KT+  Q+F YIKSVK   ERDI
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320