BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00023179
         (1235 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...   401   e-109
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   373   e-101
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   224   6e-56
ref|XP_002307225.1| predicted protein [Populus trichocarpa]           207   9e-51
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   202   3e-49
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   200   1e-48
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]   192   2e-46
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz...   186   2e-44
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   177   8e-42
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   176   2e-41
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   176   2e-41
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   174   5e-41
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...   172   3e-40
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         168   4e-39
ref|XP_002332290.1| predicted protein [Populus trichocarpa]           164   5e-38
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   162   3e-37
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   162   3e-37
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   162   3e-37
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           162   3e-37
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              157   9e-36

>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score =  401 bits (1030), Expect = e-109
 Identities = 204/312 (65%), Positives = 230/312 (73%), Gaps = 3/312 (0%)
 Frame = +1

Query: 250  QGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSCLSREQKYAFKNENSAYKLWKALEDKF 429
            +GLDIAI               INRLACGTIRSCLSREQKY  KNE SA+KLWKALEDKF
Sbjct: 13   KGLDIAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYVVKNETSAHKLWKALEDKF 72

Query: 430  LKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSL 609
            LKKSGQNKLLMKKRLFRF+Y+ GTTMN HIT FNQLVA LLNLDV F DEDLALML+SSL
Sbjct: 73   LKKSGQNKLLMKKRLFRFDYQQGTTMNAHITMFNQLVAYLLNLDVKFEDEDLALMLVSSL 132

Query: 610  PDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXX 789
            PDEFEHLETTLLHGKD+VSL VVC+ALYS+EL            +++  +          
Sbjct: 133  PDEFEHLETTLLHGKDNVSLDVVCSALYSHELRKQDKMKTKSTTSEEALVTRGGQQSQTK 192

Query: 790  XXXXXXXXXXAKLDKDECAFCHEKGHWKKDCPKLKNKGKAPQDACVAEGES--EDEFSLV 963
                        + KDECAFCHEKGHWKKDCPKL+ K K PQDA VAE +S  E + SL+
Sbjct: 193  ERRGMCKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLI 252

Query: 964  VS-PLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKN 1140
            VS    S  DEWILDSGCTYHM P+++WFF F+E++GGVVYMGNDN CKT GIGSI+L+N
Sbjct: 253  VSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTAGIGSIKLRN 312

Query: 1141 HDGSTRVLTDVR 1176
            HDGSTR+L DVR
Sbjct: 313  HDGSTRILRDVR 324


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  373 bits (958), Expect = e-101
 Identities = 206/344 (59%), Positives = 228/344 (66%), Gaps = 4/344 (1%)
 Frame = +1

Query: 214  MWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSCLSREQKYAFKNENS 393
            MWQGEVLD LFQQGLDIAI               INRLACGTIRSCLSREQKYA KNE S
Sbjct: 1    MWQGEVLDSLFQQGLDIAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYAVKNETS 60

Query: 394  AYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFS 573
            A+KLWKALEDKFLKKS                                       DV F 
Sbjct: 61   AHKLWKALEDKFLKKS---------------------------------------DVKFE 81

Query: 574  DEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAADDE 753
            DEDLALMLLSSLPDEFEHLETTLLHGK++VSL VVC+ALYS+EL            ++ E
Sbjct: 82   DEDLALMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTSE-E 140

Query: 754  ALVAXXXXXXXXXXXXXXXXXXAK-LDKDECAFCHEKGHWKKDCPKLKNKGKAPQDACVA 930
            ALVA                   + + KDECAFCHEKGHWKKDCPKL+ K K  QDA VA
Sbjct: 141  ALVARGRQQSQTKERRGMSKSKGRAVAKDECAFCHEKGHWKKDCPKLQKKEKVLQDANVA 200

Query: 931  EGES--EDEFSLVVSPLISRS-DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNA 1101
            E +S  E + SL+VS   S   DEWILDSGCTYHM P+++WFF F+E++GGVVYMGNDN 
Sbjct: 201  ECKSDVESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNP 260

Query: 1102 CKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
            CKT GIGSI+L+NHDGSTR+L DVRYVP LKKNLISLGALESKG
Sbjct: 261  CKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKG 304


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  224 bits (571), Expect = 6e-56
 Identities = 134/358 (37%), Positives = 186/358 (51%), Gaps = 3/358 (0%)
 Frame = +1

Query: 169  IRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRS 348
            + + ++ F G   F +WQ ++   L QQG   A                +   A  TI  
Sbjct: 4    LNVKIDKFTGRNSFSLWQIKMRALLKQQGF-WAPLSKDKNAVVTPEMAILEEKAHSTIML 62

Query: 349  CLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAF 528
            CL+ +      +E +A  LW  LE  ++ KS  NKLL+K+RLF      GT + +H+   
Sbjct: 63   CLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQL 122

Query: 529  NQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELX 708
            N L+ +L N+DV   DED AL+LL SLP  FE+   + + GKD VSL  V +AL+S EL 
Sbjct: 123  NTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELR 182

Query: 709  XXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDECAFCHEKGHWKKDCPK 888
                     I        +                  AK D D C +C EKGHWK DCPK
Sbjct: 183  HKANGTSTDIQPSG-LFTSSRKGRKNGGKKNKPMSKGAKPD-DVCNYCKEKGHWKFDCPK 240

Query: 889  LKNKG-KAPQDACVAEGE--SEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFE 1059
             K +  K    A VAE +  SE++ +LV       SD W+LDSG +YH+ P +EWF  +E
Sbjct: 241  KKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYE 300

Query: 1060 EINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
            +++GG + M N + CK  G GSI+++ HDGS   L +VR+VP + KNLISL  L+SKG
Sbjct: 301  QVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKG 358


>ref|XP_002307225.1| predicted protein [Populus trichocarpa]
          Length = 279

 Score =  207 bits (526), Expect = 9e-51
 Identities = 115/265 (43%), Positives = 152/265 (57%), Gaps = 8/265 (3%)
 Frame = +1

Query: 145 PGRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINR 324
           P  + V + +  VE FDG G+FGMW+ E +D L Q  LD  +               IN 
Sbjct: 17  PQYIPVSSTKFEVEKFDGKGNFGMWKCEDMDMLVQINLDFTLEDKPEDLDDKSWER-INW 75

Query: 325 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTT 504
           LAC +IR CL ++QKY F  +NSA KLW+ALEDKF+KKS +N+L +KKR+FRF+++ GT+
Sbjct: 76  LACSSIRLCLVKDQKYTFSEQNSAKKLWQALEDKFMKKSIENRLYLKKRIFRFQHKKGTS 135

Query: 505 MNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCA 684
           MN+H+  FN++ ADL NLDV   DED AL+LL+SLPD +EHL TTLL+GK+ +    V  
Sbjct: 136 MNEHLNDFNKMTADLKNLDVEIDDEDKALLLLNSLPDIYEHLVTTLLYGKEKIKFIDVSN 195

Query: 685 ALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK--------LDKDE 840
           AL + E             +  EAL                    ++        L K+E
Sbjct: 196 ALVNNEYRKKDQIVHK--ESTSEALTVRGRTNPKRFRGRGRSRSKSRGESSNRRYLAKNE 253

Query: 841 CAFCHEKGHWKKDCPKLKNKGKAPQ 915
           CAFCH+K HWKKDCP   NK K  Q
Sbjct: 254 CAFCHKKRHWKKDCPIKGNKEKMNQ 278


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 425

 Score =  202 bits (513), Expect = 3e-49
 Identities = 121/356 (33%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
 Frame = +1

Query: 172  RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSC 351
            +  V  FDGTG+F +WQ  + D L QQG+  A+               +   A  TIR  
Sbjct: 8    KFEVVKFDGTGNFILWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRLS 67

Query: 352  LSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFN 531
            LS    Y   +E +  ++W  L   ++ KS  +KL +K++L+  + +  + +  H+  FN
Sbjct: 68   LSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFN 127

Query: 532  QLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXX 711
            QLV DL  LDV   DED+A++LL SLP  +EH+ TTL+HGKD V      ++L + +L  
Sbjct: 128  QLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTVKTEEKISSLLARDLRR 187

Query: 712  XXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDE---CAFCHEKGHWKKDC 882
                     +  +EA+ A                  +K  KD+   C  CHE GH +++C
Sbjct: 188  ---------SNKNEAMEASQAESLLVKAKHDHEAGVSK-SKDKGARCYKCHEFGHIRRNC 237

Query: 883  PKLKNKGKAPQDACVAEGESEDEFS---LVVSPLISRSDEWILDSGCTYHMSPVKEWFFN 1053
            P LK K K    +  A G+  D  S   L VS   S  + W+LDS  +YH++  +EWF +
Sbjct: 238  PLLK-KRKGGIASLAARGDDSDSSSHETLTVSNEKS-GEAWMLDSASSYHVTSKREWFSS 295

Query: 1054 FEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGAL 1221
            ++  + GVVY+G+D + +  G+G ++ + +DG+  +L+DVR++P L+K+LISLG+L
Sbjct: 296  YKSGDFGVVYLGDDTSYRVVGVGDVKFEMYDGNEVLLSDVRHMPGLRKSLISLGSL 351


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 424

 Score =  200 bits (508), Expect = 1e-48
 Identities = 119/357 (33%), Positives = 187/357 (52%), Gaps = 3/357 (0%)
 Frame = +1

Query: 172  RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSC 351
            +  V  FDGTG+F +WQ  + D L QQG+  A+               +   A  TIR  
Sbjct: 8    KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRLS 67

Query: 352  LSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFN 531
            LS    Y   +E ++ ++W  L   ++ KS  +KL +K++L+  + +  + +  H+  FN
Sbjct: 68   LSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFN 127

Query: 532  QLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXX 711
            QLV DL  LDV   DED A++LL SLP  +EH+ T L HGKD +   ++ ++L + +L  
Sbjct: 128  QLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIKTEII-SSLLARDLRR 186

Query: 712  XXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDECAFCHEKGHWKKDCPKL 891
                     +  +  LV                   +K     C  CHE GH +++CP L
Sbjct: 187  SKKNEAMEASQAESLLV-------KAKHDHEAGVSKSKEKGARCYKCHEFGHIRRNCPLL 239

Query: 892  KNKGKAPQDACVAEGESEDEFS---LVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEE 1062
            K K K    +  A G+  D  S   L VS   S  + W+LDS  +YH++  +EWF +++ 
Sbjct: 240  K-KRKDGIASLAARGDDSDSSSHEILTVSNEKS-GEAWMLDSASSYHVTSKREWFSSYKS 297

Query: 1063 INGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             + GVVY+G+D + +  G+G ++ K +DG+  +L+DVR+VP L+K+LISLG+L   G
Sbjct: 298  GDFGVVYLGDDTSYRVVGVGDVKFKMYDGNEVLLSDVRHVPGLRKSLISLGSLHEIG 354


>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score =  192 bits (489), Expect = 2e-46
 Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 10/365 (2%)
 Frame = +1

Query: 169  IRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRL--ACGTI 342
            ++  VE F G   FG+W+ ++   L QQGL  A+               I  L  A G I
Sbjct: 4    VKFDVEKFTGKNDFGLWRLKMRALLVQQGLQDALLGEKNLPXTMQEKHKIELLEKAHGAI 63

Query: 343  RSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHIT 522
               L            SA KL   LE  ++ KS  N+L    +L+ F+     ++ +H+ 
Sbjct: 64   ILSLGDTXLREVAKAKSAAKLLLKLESLYMTKSLANRLHKXIKLYTFKMTPSMSIEEHLD 123

Query: 523  AFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYE 702
             FN+++ DL N+D+  S+ED A++LL+SL   + +++  +++G+D ++   V + L++ E
Sbjct: 124  HFNKIILDLKNIDIAVSNEDKAILLLTSLDASYTNMKEAIMYGRDILTFDEVQSILHARE 183

Query: 703  LXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDECAFCHEKGHWKKDC 882
            L             +   +                    +K  K +C  CH++GH+KKDC
Sbjct: 184  LHKQEESKEEL--GEGLNIRGKSKKREKKKGNNSKSRSKSKTKKFKCFICHKEGHFKKDC 241

Query: 883  PKLK--------NKGKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVK 1038
            P ++        N+G A     + +G   D   ++    +    EWILDSGC++HM P+K
Sbjct: 242  PDMRQNTXKKTMNEGDATM---ILDGY--DNAGVLNVAEVDSGKEWILDSGCSFHMCPIK 296

Query: 1039 EWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGA 1218
             WF +F+E NGG V +GN+  CK  G G++++K++DG  RVL D+RY+P LK NLISLG 
Sbjct: 297  AWFEDFKEANGGHVLLGNNKHCKILGTGTVKIKHYDGIERVLEDIRYIPELKMNLISLGM 356

Query: 1219 LESKG 1233
            L+  G
Sbjct: 357  LDKLG 361


>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
            Group] gi|108706491|gb|ABF94286.1| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 556

 Score =  186 bits (471), Expect = 2e-44
 Identities = 116/344 (33%), Positives = 175/344 (50%), Gaps = 3/344 (0%)
 Frame = +1

Query: 211  GMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSCLSREQKYAFKNEN 390
            G  Q  + D L QQG+  A+               +   A   IR  LS    Y   +E 
Sbjct: 152  GSSQMRLKDLLAQQGISKALEETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEK 211

Query: 391  SAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTF 570
            +  ++W  L   ++ KS  +KL +K++L+  + +  + +  H+  FNQLV DL  LDV  
Sbjct: 212  TPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKL 271

Query: 571  SDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAADD 750
             DED A++LL SLP  FEH+ TTL HGKD V    + ++L + +L           +  +
Sbjct: 272  DDEDKAIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEAMEASQAE 331

Query: 751  EALVAXXXXXXXXXXXXXXXXXXAKLDKDECAFCHEKGHWKKDCPKLKNKGKAPQDACVA 930
              LV                   +K     C  CHE GH +++CP LK K K    +  A
Sbjct: 332  SLLV-------KAKHDHEAGVSKSKEKGARCYKCHEFGHIRRNCPLLK-KRKGGIASLAA 383

Query: 931  EGESEDEFS---LVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNA 1101
             G++ D  S   L VS   S  + W+LDS  +YH++   EWF +++  + GVVY+GND +
Sbjct: 384  RGDNSDSSSHEILTVSNEKS-GEAWMLDSASSYHVTSKWEWFSSYKSGDFGVVYLGNDTS 442

Query: 1102 CKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             +  G+G I+ K +DG+  +L+DVR+VP L+K+LISLG+L   G
Sbjct: 443  YRVIGVGDIKFKMYDGNEVLLSDVRHVPGLRKSLISLGSLHETG 486


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  177 bits (449), Expect = 8e-42
 Identities = 105/299 (35%), Positives = 156/299 (52%), Gaps = 4/299 (1%)
 Frame = +1

Query: 349  CLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAF 528
            CL  +       E+   KLW  LE   + KS +N+L +KKRL   + +   ++ DH   F
Sbjct: 20   CLGNKVLREIAEEDITAKLWLKLESLHMTKSLKNRLYLKKRLHTLQMKESMSIKDHFNEF 79

Query: 529  NQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELX 708
            N+ + DL N+DV  + ED A+ L+ SLP+ +EH    +++G+  + +  V  AL S EL 
Sbjct: 80   NKTIXDLRNIDVKVNYEDQAIFLMCSLPNSYEHFVDIMMYGRGTLFIKDVRVALNSRELK 139

Query: 709  XXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDECAFCHEKGHWKKDCPK 888
                      +   E LVA                  ++   ++C  C ++GH+ K+ P 
Sbjct: 140  KMVFKSRKYDSG--EGLVARGRTRKKNNGRRGRSRSKSR-GNNKCFKCKKEGHYVKNXPD 196

Query: 889  LKNKGKAPQ----DACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNF 1056
             K K         DA  A+ E+ +   +++  + +  DEWILDSGC+YHMSP  +WF  +
Sbjct: 197  RKGKENKRNYNSGDATFAK-ENSNTTDVLLVXVTNSDDEWILDSGCSYHMSPNGDWFSTY 255

Query: 1057 EEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
            + I+GG V MGN  ACK  GI  I++K H G  R LT+VR+VP L KNLI L  L+S G
Sbjct: 256  QPIDGGKVLMGNKVACKVVGIHXIQIKMHGGIIRTLTNVRHVPKLNKNLIFLRTLDSNG 314


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  176 bits (446), Expect = 2e-41
 Identities = 101/290 (34%), Positives = 157/290 (54%), Gaps = 12/290 (4%)
 Frame = +1

Query: 400  KLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDE 579
            +LW  LE  ++ KS  N+L  K +L+ F+   G ++ +H   FN+++ DL N+D+T S+E
Sbjct: 127  ELWLKLESLYMTKSLANRLHKKIKLYTFKITPGMSIEEHFDHFNKIILDLENIDITVSNE 186

Query: 580  DLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAADDEAL 759
            D A++LL+SL   + +++  +++G+D ++   V + L+  EL            + DE+ 
Sbjct: 187  DKAILLLTSLDASYTNMKEAIMYGRDSMTFDEVQSILHPRELQKQEE-------SKDESG 239

Query: 760  VAXXXXXXXXXXXXXXXXXXAK----LDKDECAFCHEKGHWKKDCP--------KLKNKG 903
                                AK      K +C  CH++GH+KKDC         K  N+G
Sbjct: 240  EGLNIRGRYDKREKKCKNLKAKSKSNTKKFKCFICHKEGHFKKDCSDKRQNTIKKTVNEG 299

Query: 904  KAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVY 1083
             A   A + +G    +   V    +    EWILDSGC++HM P+K WF +F+E NGG V 
Sbjct: 300  DA---AVILDGYDSAKVLNVAE--MDSGKEWILDSGCSFHMCPIKAWFEDFKEANGGHVL 354

Query: 1084 MGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
            +GN+  CK  G   +R+K++DG  RVL  VRY+P LK+NLISLG L+  G
Sbjct: 355  LGNNKHCKILGTSIVRIKHYDGIERVLEVVRYIPELKRNLISLGMLDKLG 404


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  176 bits (446), Expect = 2e-41
 Identities = 119/385 (30%), Positives = 186/385 (48%), Gaps = 31/385 (8%)
 Frame = +1

Query: 172  RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSC 351
            RI VE FDG G + MW+ ++L  +   GL+ A+                +      +   
Sbjct: 5    RIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKF 64

Query: 352  LSREQKYA-----------------FKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFR 480
             + E+K                    K E++A  +  AL+  ++ K+  N++  K++L+ 
Sbjct: 65   EALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYS 124

Query: 481  FEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLH--GK 654
            F+     ++  +I  F Q++ DL N++V  SDED A++LL++LP  F+ L+ TL +  GK
Sbjct: 125  FKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGK 184

Query: 655  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDK 834
              ++L  V AA+YS EL          + A+   +                     K  K
Sbjct: 185  SILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKK 244

Query: 835  DE-CAFCHEKGHWKKDCPKLKNKGKAPQDACV------AEGESEDEFSLVVSPLISRS-- 987
               C  C E+GH++  CP  +NK +  Q   V       +G   +     VS  +S +  
Sbjct: 245  KPGCWTCGEEGHFRSSCPN-QNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSEALSSTEV 303

Query: 988  ---DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTR 1158
               DEWILD+GC+YHM+  +EWF  F E  GG V MGN    +  G+G+IR+KN DG T 
Sbjct: 304  HLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTI 363

Query: 1159 VLTDVRYVPNLKKNLISLGALESKG 1233
            VLT+VRY+P++ +NL+SLG  E  G
Sbjct: 364  VLTNVRYIPDMDRNLLSLGTFEKAG 388


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  174 bits (442), Expect = 5e-41
 Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 20/303 (6%)
 Frame = +1

Query: 385  ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 564
            E +A  LW  LE   + K   +K+ +K++LF  + +   ++ DH++ F ++VADL ++++
Sbjct: 19   EKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSTFKEIVADLESMEI 78

Query: 565  TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAA 744
             + +EDL L+LL SLP  + +   T+L+ +D ++L  V  AL++ E            + 
Sbjct: 79   KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSNSQ 138

Query: 745  DDEALVAXXXXXXXXXXXXXXXXXXAKLDKDE-------CAFCHEKGHWKKDCPKLKNK- 900
             +  +V                       + +       C +C   GH   DC KL+NK 
Sbjct: 139  PESLVVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKE 198

Query: 901  ---------GKAPQD---ACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEW 1044
                     GK  +    A   + + + E  +  +  +  SDEW+LD+GCTYHM P ++W
Sbjct: 199  KHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDW 258

Query: 1045 FFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALE 1224
            F  +E + GG V MG++  CK  G+G+I++K  DG  R L+DVR++P+LK+NLISL  L+
Sbjct: 259  FTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLD 318

Query: 1225 SKG 1233
             KG
Sbjct: 319  RKG 321


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 415

 Score =  172 bits (436), Expect = 3e-40
 Identities = 111/357 (31%), Positives = 171/357 (47%), Gaps = 3/357 (0%)
 Frame = +1

Query: 172  RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTINRLACGTIRSC 351
            +  V  FDGTG+F +WQ  + D L QQG+  A+               +   A  TIR  
Sbjct: 8    KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQETMPEKIDADKWNEMKAQAAATIRLS 67

Query: 352  LSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFN 531
            LS    Y   +E S  ++W  L    + KS  +KL +K++L+  + +  + +  H+  FN
Sbjct: 68   LSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFN 127

Query: 532  QLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXX 711
            QLV DL  LDV   DED A++LL SLP  +EH+ TTL HGKD V    + ++L + +L  
Sbjct: 128  QLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRR 187

Query: 712  XXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDECAFCHEKGHWKKDCPKL 891
                     +     LV                   +K     C  CHE GH +++CP L
Sbjct: 188  SKKNEATKASQGKSLLV-------KDKHDHEAGVSKSKEKGARCYKCHEFGHIRRNCPLL 240

Query: 892  KNKGKAPQDACVAEGESEDEFS---LVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEE 1062
            K K K    +  A G+  D  S   L VS  +S  + W+LDS  +YH++  +EWF +++ 
Sbjct: 241  K-KRKGGIASLAARGDDSDSGSHEILTVSDEMS-GEAWMLDSASSYHVTSKREWFSSYKS 298

Query: 1063 INGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             + GVVY+G+  + +  G+G +  K        + + R    +K+  +SLG+L   G
Sbjct: 299  GDFGVVYLGDGTSYRVVGVGDVNFK--------ICETR--AGIKEEFVSLGSLHETG 345


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  168 bits (426), Expect = 4e-39
 Identities = 121/391 (30%), Positives = 184/391 (47%), Gaps = 37/391 (9%)
 Frame = +1

Query: 172  RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXXTIN---------- 321
            RI VE FDG G + MW+ ++L  +   GL   +                +          
Sbjct: 5    RIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEEREKM 64

Query: 322  -------RLACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFR 480
                   R A  TI   +S       K E SA  + +AL+  ++ K+  N++ +K++L+ 
Sbjct: 65   EAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYS 124

Query: 481  FEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLH--GK 654
            F+     ++  +I  F  +VADL NL+V  SDED A++LL SLP  F+ L+ TL +  GK
Sbjct: 125  FKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGK 184

Query: 655  DDVSLAVVCAALYSYELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAKL-D 831
              +SL  V AA+YS EL            A+   +                    +K   
Sbjct: 185  TVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKS 244

Query: 832  KDECAFCHEKGHWKKDCP-----KLKNKGKAPQDACVAEG---ESEDEF----SLVVSPL 975
            K  C  C E GH K  CP     + KN+G    ++   +G   E    F     + VS  
Sbjct: 245  KRGCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVESAGMFVSEA 304

Query: 976  ISRSD-----EWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKN 1140
            +S +D     EWI+D+GC YHM+  +EW  +F+E  GG V MGN +  +  G+G++R+ N
Sbjct: 305  LSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGVGTVRIVN 364

Query: 1141 HDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             +G T  L +VRY+P++ +NL+SLG  E  G
Sbjct: 365  DNGLTVTLQNVRYIPDMDRNLLSLGTFEKAG 395


>ref|XP_002332290.1| predicted protein [Populus trichocarpa]
          Length = 292

 Score =  164 bits (416), Expect = 5e-38
 Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 8/218 (3%)
 Frame = +1

Query: 340 IRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHI 519
           + S   + +K+  K +NSA +LW+ALEDKF+KKS +N+L +KKR+FRF+++ G++MN+H+
Sbjct: 22  VSSIKFKVEKFDGKEQNSAKELWQALEDKFMKKSIENRLYLKKRIFRFQHKKGSSMNEHL 81

Query: 520 TAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSY 699
             FN+++ADL NLDV   DED AL+LL+SLPD +EHL TTLL+GK+ +    V  AL + 
Sbjct: 82  NDFNKMIADLKNLDVEIDDEDKALLLLNSLPDTYEHLVTTLLYGKEKIKFIDVSNALVNN 141

Query: 700 ELXXXXXXXXXXIAADDEALVAXXXXXXXXXXXXXXXXXXAK--------LDKDECAFCH 855
           E                EAL                    ++        L KDECAFCH
Sbjct: 142 EYRKKDQIVHKESTL--EALTVRGRTNPRRFRGQGRSRSKSRGESSNRRYLAKDECAFCH 199

Query: 856 EKGHWKKDCPKLKNKGKAPQDACVAEGESEDEFSLVVS 969
           +KGHWKKD P   NK K      +A  E E + + +VS
Sbjct: 200 KKGHWKKDSPIKGNKEKDEPTVNIARDEDEQDSAFMVS 237


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  162 bits (410), Expect = 3e-37
 Identities = 95/296 (32%), Positives = 157/296 (53%), Gaps = 13/296 (4%)
 Frame = +1

Query: 385  ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 564
            E ++ +LW  LE   + K   +K+ MK +LF  + +   ++  H+  F ++VADL++++V
Sbjct: 75   EKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEV 134

Query: 565  TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAA 744
             + DEDL L+LL SLP+ + +   T+L  +D+++L  V  AL + E            ++
Sbjct: 135  KYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSS 194

Query: 745  DDEAL-VAXXXXXXXXXXXXXXXXXXAKL----DKDECAFCHEKGHWKKDCPKL-----K 894
              EAL V                   +K     +K  C +C  K H   +C K+     K
Sbjct: 195  KGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK 254

Query: 895  NK--GKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEI- 1065
            NK  GK    +  A  +   +  +V +  ++  DEWILDS C++H+   + WF +++ + 
Sbjct: 255  NKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 314

Query: 1066 NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             G VV MG+DN C   GIGS+++K  DG TR L +VRY+P + +NLISL  L+++G
Sbjct: 315  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEG 370


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  162 bits (410), Expect = 3e-37
 Identities = 95/296 (32%), Positives = 157/296 (53%), Gaps = 13/296 (4%)
 Frame = +1

Query: 385  ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 564
            E ++ +LW  LE   + K   +K+ MK +LF  + +   ++  H+  F ++VADL++++V
Sbjct: 75   EKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEV 134

Query: 565  TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAA 744
             + DEDL L+LL SLP+ + +   T+L  +D+++L  V  AL + E            ++
Sbjct: 135  KYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSS 194

Query: 745  DDEAL-VAXXXXXXXXXXXXXXXXXXAKL----DKDECAFCHEKGHWKKDCPKL-----K 894
              EAL V                   +K     +K  C +C  K H   +C K+     K
Sbjct: 195  KGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK 254

Query: 895  NK--GKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEI- 1065
            NK  GK    +  A  +   +  +V +  ++  DEWILDS C++H+   + WF +++ + 
Sbjct: 255  NKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 314

Query: 1066 NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             G VV MG+DN C   GIGS+++K  DG TR L +VRY+P + +NLISL  L+++G
Sbjct: 315  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEG 370


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  162 bits (410), Expect = 3e-37
 Identities = 95/296 (32%), Positives = 157/296 (53%), Gaps = 13/296 (4%)
 Frame = +1

Query: 385  ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 564
            E ++ +LW  LE   + K   +K+ MK +LF  + +   ++  H+  F ++VADL++++V
Sbjct: 75   EKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEV 134

Query: 565  TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAA 744
             + DEDL L+LL SLP+ + +   T+L  +D+++L  V  AL + E            ++
Sbjct: 135  KYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSS 194

Query: 745  DDEAL-VAXXXXXXXXXXXXXXXXXXAKL----DKDECAFCHEKGHWKKDCPKL-----K 894
              EAL V                   +K     +K  C +C  K H   +C K+     K
Sbjct: 195  KGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK 254

Query: 895  NK--GKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEI- 1065
            NK  GK    +  A  +   +  +V +  ++  DEWILDS C++H+   + WF +++ + 
Sbjct: 255  NKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 314

Query: 1066 NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             G VV MG+DN C   GIGS+++K  DG TR L +VRY+P + +NLISL  L+++G
Sbjct: 315  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEG 370


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  162 bits (409), Expect = 3e-37
 Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 13/296 (4%)
 Frame = +1

Query: 385  ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 564
            E ++ +LW  LE   + K   +K+ MK +LF  + +   ++  HI  F ++VADL++++V
Sbjct: 77   EKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAEFKKIVADLVSMEV 136

Query: 565  TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXXIAA 744
             + DEDL L+LL SLP+ + +   T+L  +D+++L  V  AL + E            ++
Sbjct: 137  KYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSS 196

Query: 745  DDEAL-VAXXXXXXXXXXXXXXXXXXAKL----DKDECAFCHEKGHWKKDCPKL-----K 894
              EAL V                   +K     +K  C +C  K H   +C K+     K
Sbjct: 197  KGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK 256

Query: 895  NK--GKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEI- 1065
            NK  GK    +     +   +  +V +  ++  DEWILDS C++H+   + WF +++ + 
Sbjct: 257  NKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQ 316

Query: 1066 NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             G VV MG+DN C   GIGS+++K  DG TR L +VRY+P + +NLISL  L+++G
Sbjct: 317  KGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEG 372


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  157 bits (397), Expect = 9e-36
 Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 15/298 (5%)
 Frame = +1

Query: 385  ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 564
            + +A ++W  L   +  KS  N++ +K+RL+       T++ DHI   N L + L   D 
Sbjct: 73   KKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDF 132

Query: 565  TFSDEDLALMLLSSLPDEFEHLETTLLHGK--DDVSLAVVCAALYSYELXXXXXXXXXXI 738
              ++ + A +LL SLPD ++ L   + +    D +    V  A+   E            
Sbjct: 133  KIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEEESRRKNKEERSES 192

Query: 739  AADDEALVAXXXXXXXXXXXXXXXXXXAKLDKDE---CAFCHEKGHWKKDCPKLKNKGKA 909
            +   EAL                    +K  + +   C  C  KGH KK+C  +K  G+ 
Sbjct: 193  SKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEK 252

Query: 910  PQDACVAEG---ESEDEFSLVVSPLISRS-------DEWILDSGCTYHMSPVKEWFFNFE 1059
              +A  ++G    + D+  ++ S   + S       D WI+DSG T+HM+P ++WFF++E
Sbjct: 253  NSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYE 312

Query: 1060 EINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKG 1233
             I+ G VYMGND+A +  G+G+IRLK HDG+ R +  VR+V  LKKNL+S+G L+  G
Sbjct: 313  PISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLG 370