BLASTX nr result
ID: Rehmannia22_contig00022227
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00022227
(525 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 144 2e-32
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 132 4e-29
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 132 5e-29
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 131 8e-29
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 131 8e-29
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 131 8e-29
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 131 1e-28
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 131 1e-28
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 129 3e-28
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 128 7e-28
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 128 7e-28
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 127 1e-27
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 127 1e-27
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 127 1e-27
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 127 2e-27
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 127 2e-27
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 127 2e-27
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 127 2e-27
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 127 2e-27
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 126 3e-27
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 144 bits (362), Expect = 2e-32
Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ C+FHM+P K+ F ++KE+ + +V M N+ + GIG I ++ G L +VR++P
Sbjct: 289 TGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMP 348
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGNSVN 165
++ NLIS LED G + +G++KI+KG I K KR+ LY+ G V+ G S +
Sbjct: 349 NMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDG--VTEEGESHS 406
Query: 164 IVQ-EDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKV 6
+ +D+T LWH RLGHMS KG+EIL K GC +V+ + FC+ CV GKQH+V
Sbjct: 407 SAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRV 460
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 132 bits (333), Expect = 4e-29
Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 304 TACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIP 363
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 364 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATV 423
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K G +S + FC+ C+ GK +VK
Sbjct: 424 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVK 480
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 132 bits (332), Expect = 5e-29
Identities = 77/179 (43%), Positives = 99/179 (55%), Gaps = 6/179 (3%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+A + H +P ++LF Y V M N I GIGDIC+K + G LK+VRHVP
Sbjct: 298 TAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVP 357
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLY-----VCIGKPVSFA 180
DL NLIS AL+ DG E F N ++ KGSLVI K V R LY +C G+
Sbjct: 358 DLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGE----- 412
Query: 179 GNSVNIVQED-KTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKV 6
+N Q++ DLWHKR+GHMS KGL+IL K + + CD C+ GKQH+V
Sbjct: 413 ---LNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRV 468
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 131 bits (330), Expect = 8e-29
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 136 TACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIP 195
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 196 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 255
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K G + + FC+ C+ GK +VK
Sbjct: 256 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 312
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 131 bits (330), Expect = 8e-29
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
S T+HM+P ++ F Y+ V V M N+ I GIG + +K G TL+ VRHV
Sbjct: 295 SGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVK 354
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCIGKPVSFAGNSV 168
+L NL+S L+D G + G++K++KGSLV+ KA K NLY+ +G A SV
Sbjct: 355 ELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASV 414
Query: 167 NI-VQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
+ QE+ T +WH+RLGHMS +GL++L + +PFC+ CV+ KQH++K
Sbjct: 415 AVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLK 470
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 131 bits (330), Expect = 8e-29
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 136 TACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIP 195
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 196 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 255
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K G + + FC+ C+ GK +VK
Sbjct: 256 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 312
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 131 bits (329), Expect = 1e-28
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 270 TACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIP 329
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 330 NLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 389
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K G + + FC+ C+ GK +VK
Sbjct: 390 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVK 446
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 131 bits (329), Expect = 1e-28
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 213 TACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIP 272
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 273 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAV 332
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K G + + FC+ C+ GK +VK
Sbjct: 333 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 389
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 129 bits (325), Expect = 3e-28
Identities = 71/177 (40%), Positives = 94/177 (53%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
S CT+HM P ++ F ++E+ V M N+ C GIG I L+ G L++VR+VP
Sbjct: 229 SGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVP 288
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPV---SFAGN 174
L NLIS ALE GL +G++K G+LV+ K V +NNLY G V A
Sbjct: 289 KLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAAT 348
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S + + T LWH RLGH K L+I K G + FC+ CVLGKQ +VK
Sbjct: 349 SSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVK 405
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 128 bits (322), Expect = 7e-28
Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 121 TACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIP 180
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 181 NLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATV 240
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L G + + FC+ C+ GK +VK
Sbjct: 241 SDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVK 297
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 128 bits (322), Expect = 7e-28
Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ACT+HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 289 TACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIP 348
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 349 NLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATV 408
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L G + + FC+ C+ GK +VK
Sbjct: 409 SDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVK 465
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 127 bits (320), Expect = 1e-27
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+AC +HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 511 TACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIP 570
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 571 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 630
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHM+ GL L K G + + FC+ C+ GK +VK
Sbjct: 631 SDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 687
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 127 bits (320), Expect = 1e-27
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+AC +HM P ++ F+ Y+ V+ V M ++ C + GIG + +K G TL +VRH+P
Sbjct: 304 TACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIP 363
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 364 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 423
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHM+ GL L K G + + FC+ C+ GK +VK
Sbjct: 424 SDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 480
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 127 bits (320), Expect = 1e-27
Identities = 64/173 (36%), Positives = 100/173 (57%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+ C+FHM+P ++ F + E + V MAN+ I GIG I ++ D LKNVR+VP
Sbjct: 309 TGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLLKNVRYVP 368
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGNSVN 165
+ NLIS LED G + G +K++KG + + K K LY+ G V+ N+V
Sbjct: 369 SMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVVVTGNANAVT 428
Query: 164 IVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKV 6
+D++ +WH RL HMS + +++L K GC ++ ++ + FC+ CV GK H+V
Sbjct: 429 -SSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDCVYGKTHRV 480
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 127 bits (319), Expect = 2e-27
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+A T+HM P ++ F+ Y+ ++ V M ++ C + GIG + +K GY TL +VRH+P
Sbjct: 339 TAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIP 398
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 399 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 458
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K + + FC+ C+ GK +VK
Sbjct: 459 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVK 515
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 127 bits (319), Expect = 2e-27
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
+A T+HM P ++ F+ Y+ ++ V M ++ C + GIG + +K GY TL +VRH+P
Sbjct: 339 TAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIP 398
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGN 174
+L +LIS L+ G + G+G++K+ KGSLV+ KA +K NLY G + + A
Sbjct: 399 NLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAV 458
Query: 173 SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
S ++ D T+LWH RLGHMS GL L K + + FC+ C+ GK +VK
Sbjct: 459 SDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVK 515
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 127 bits (318), Expect = 2e-27
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
S T+HM+P ++ F +Y+ + V M N+ I G+G I LK G ++ VRHV
Sbjct: 295 SGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVK 354
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCIGKPVSFAGNSV 168
L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+ +G + A SV
Sbjct: 355 GLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASV 414
Query: 167 NIV-QEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
QE+ T +WH+RLGHMS +GL++L + +PFC+ CV+ KQH++K
Sbjct: 415 AAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLK 470
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 127 bits (318), Expect = 2e-27
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
S T+HM+P ++ F +Y+ + V M N+ I G+G I LK G ++ VRHV
Sbjct: 295 SGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVK 354
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCIGKPVSFAGNSV 168
L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+ +G + A SV
Sbjct: 355 GLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASV 414
Query: 167 NIV-QEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
QE+ T +WH+RLGHMS +GL++L + +PFC+ CV+ KQH++K
Sbjct: 415 AAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 127 bits (318), Expect = 2e-27
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
S T+HM+P ++ F +Y+ + V M N+ I G+G I LK G ++ VRHV
Sbjct: 295 SGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVK 354
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCIGKPVSFAGNSV 168
L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+ +G + A SV
Sbjct: 355 GLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASV 414
Query: 167 NIV-QEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
QE+ T +WH+RLGHMS +GL++L + +PFC+ CV+ KQH++K
Sbjct: 415 AAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 126 bits (317), Expect = 3e-27
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Frame = -2
Query: 524 SACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNIFGIGDICLKFDSGYAYTLKNVRHVP 345
S T+HM+P ++ F +Y+ + V M N+ I G+G I LK G ++ VRHV
Sbjct: 295 SGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVK 354
Query: 344 DLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCIGKPVSFAGNSV 168
L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+ +G + A SV
Sbjct: 355 GLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASV 414
Query: 167 NI-VQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKVK 3
QE+ T +WH+RLGHMS +GL++L + +PFC+ CV+ KQH++K
Sbjct: 415 AASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLK 470