BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00021984
         (1318 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   386   e-104
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   370   e-100
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              358   3e-96
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   358   3e-96
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   356   1e-95
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   356   1e-95
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no...   355   3e-95
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   340   1e-90
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   333   7e-89
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   332   2e-88
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   332   3e-88
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   325   3e-86
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   317   5e-84
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   313   1e-82
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   311   3e-82
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   310   9e-82
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   310   9e-82
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   307   7e-81
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            307   7e-81
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   304   6e-80

>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  386 bits (991), Expect = e-104
 Identities = 192/358 (53%), Positives = 252/358 (70%), Gaps = 1/358 (0%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G +SG+VLVYRNPG+HFGDVH+MKA YV+E+ +VVG+AKYGIFFSTKG RSAA E+A 
Sbjct: 655  DNGQVSGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIAN 714

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXX 361
            GDFDGDMYW+S N +L+  +  + PW R++S P++  + P EFS                
Sbjct: 715  GDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAK 774

Query: 362  XPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKV 541
                +M+ AA+SWL FMDRLLTL DD   + + LKGK++ LIDIYYDALDAPKSGKKV +
Sbjct: 775  SKGANMSLAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSI 834

Query: 542  PQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEA 721
            P  LKA  +PHYME+    SYHS+SILGQIYD V +Y +E +   E+ KL CF++ IP+ 
Sbjct: 835  PHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPCFEVEIPQR 894

Query: 722  YVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIYE 901
             + +W+ RYE Y+K+M  A+    E +  + NEVIKKYK LLY A + E++ + T+ I++
Sbjct: 895  CMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFEQTVRKTEDIFD 954

Query: 902  EAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1072
            EA+AIYHV Y+ A I + +EKC FAW+VAGSALC + A      KEK L ILPSVL++
Sbjct: 955  EALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMY---RKEKDLPILPSVLQE 1009


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  370 bits (951), Expect = e-100
 Identities = 187/358 (52%), Positives = 248/358 (69%), Gaps = 5/358 (1%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G I G+VLVYRNPG+HFGD+H + AV VK + ++VGNAKYGIFFSTKG RSAA E+A GD
Sbjct: 742  GQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEIANGD 801

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXP 367
            FDGD YW+S+N +LLKYF A+ PW+R++S P +  R P  FS                 P
Sbjct: 802  FDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFSAEEREHDLFQTFLETRMP 861

Query: 368  SFDMATAAESWLTFMDRLLTLGDDRATEKNYLKG---KIIQLIDIYYDALDAPKSGKKVK 538
            ++ MA A+ +W   MDRLL LG +  TE   +K    K+ +LID+YYDA+DAPKSG KV 
Sbjct: 862  NYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDAPKSGNKVY 921

Query: 539  VPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPE 718
            +P+ LK + +PH++++    SYHS+S+LG+IYDRV  +K E     E+ KLS F++ IP+
Sbjct: 922  IPKRLKVDKFPHFLQK--KESYHSTSVLGEIYDRVEKFKAEEPAAVEIKKLSAFEVGIPD 979

Query: 719  AYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIY 898
              + +W+ RY +YR EMKEAL +  ESKND A++VIKKYKQLLYEAPDMEES ++T  +Y
Sbjct: 980  TCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLLYEAPDMEESIRSTTDMY 1039

Query: 899  EEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP-KEKPLTILPSVL 1066
             +A+AIY V Y+YA   G V KC FAW+VAG+ALC L A   A    +K + + PS+L
Sbjct: 1040 NDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHAKEHNQKVMAMSPSIL 1097


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  358 bits (919), Expect = 3e-96
 Identities = 187/360 (51%), Positives = 246/360 (68%), Gaps = 4/360 (1%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G + G+VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF  KG RS A EMA 
Sbjct: 572  DHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMAN 631

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXX 358
             DFDGDMYW+SRN +LL+YF+A+EPW R  S      + P +FS D              
Sbjct: 632  SDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTR 691

Query: 359  XXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVK 538
               S  +  AA++WL FMDRLLTL DD + EK  LK K+++L DIYYDALDAPKSG KV 
Sbjct: 692  FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 751

Query: 539  VPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDI-PIP 715
            V +ELKAE +PH+M R  + SYHS+SILGQIYD V +++ E    +E+W+L  F+I  +P
Sbjct: 752  VSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVP 809

Query: 716  EAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVI 895
            +A +  WK RY+ YR EM  AL+ G E+K++ A EVI KYKQ+LY A + EES +N + I
Sbjct: 810  QACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDI 869

Query: 896  YEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
            ++EA+AIYHV YE+ +I+G  V  C+F WRVAG ALC L   ++    EK +  +PSVLR
Sbjct: 870  FDEALAIYHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVKLG---EKSMVCVPSVLR 925


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  358 bits (919), Expect = 3e-96
 Identities = 187/360 (51%), Positives = 246/360 (68%), Gaps = 4/360 (1%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G + G+VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF  KG RS A EMA 
Sbjct: 586  DHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMAN 645

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXX 358
             DFDGDMYW+SRN +LL+YF+A+EPW R  S      + P +FS D              
Sbjct: 646  SDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTR 705

Query: 359  XXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVK 538
               S  +  AA++WL FMDRLLTL DD + EK  LK K+++L DIYYDALDAPKSG KV 
Sbjct: 706  FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 765

Query: 539  VPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDI-PIP 715
            V +ELKAE +PH+M R  + SYHS+SILGQIYD V +++ E    +E+W+L  F+I  +P
Sbjct: 766  VSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVP 823

Query: 716  EAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVI 895
            +A +  WK RY+ YR EM  AL+ G E+K++ A EVI KYKQ+LY A + EES +N + I
Sbjct: 824  QACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDI 883

Query: 896  YEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
            ++EA+AIYHV YE+ +I+G  V  C+F WRVAG ALC L   ++    EK +  +PSVLR
Sbjct: 884  FDEALAIYHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVKLG---EKSMVCVPSVLR 939


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  356 bits (914), Expect = 1e-95
 Identities = 187/359 (52%), Positives = 242/359 (67%), Gaps = 3/359 (0%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G ISG+VL+YRNPG+HFGD+HI+KA YV+E+E+ VGNAKY IFF  KG RS A EM+ 
Sbjct: 519  DCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSG 578

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXX 358
            GDFDGDM+++SRN +LL+ FK  EPW    S P+   R P EFSD               
Sbjct: 579  GDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNR 638

Query: 359  XXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKV 535
              PS  +  AA+SWL  MDRLLTLG+D A E   +K  I  LIDIYYDALDAP K G+++
Sbjct: 639  FQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRI 698

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIP 715
            +VP+ LKAE++PH+M +    +Y S+SILG+IYD+V AY++  +   +VWKL CFD  + 
Sbjct: 699  EVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVH 758

Query: 716  EAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVI 895
            E Y+  WK  Y  YRKEM+ AL++G+ES ND ANEVI+KYK+ LYEA +   S +  + I
Sbjct: 759  ELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEI 817

Query: 896  YEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
            +EEA+A+Y V Y +A   G V  CSFAWRVAG ALC L   +  G  E+P+   PS L+
Sbjct: 818  FEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSPSALK 874


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  356 bits (914), Expect = 1e-95
 Identities = 187/359 (52%), Positives = 242/359 (67%), Gaps = 3/359 (0%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G ISG+VL+YRNPG+HFGD+HI+KA YV+E+E+ VGNAKY IFF  KG RS A EM+ 
Sbjct: 541  DCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSG 600

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXX 358
            GDFDGDM+++SRN +LL+ FK  EPW    S P+   R P EFSD               
Sbjct: 601  GDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNR 660

Query: 359  XXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKV 535
              PS  +  AA+SWL  MDRLLTLG+D A E   +K  I  LIDIYYDALDAP K G+++
Sbjct: 661  FQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRI 720

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIP 715
            +VP+ LKAE++PH+M +    +Y S+SILG+IYD+V AY++  +   +VWKL CFD  + 
Sbjct: 721  EVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVH 780

Query: 716  EAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVI 895
            E Y+  WK  Y  YRKEM+ AL++G+ES ND ANEVI+KYK+ LYEA +   S +  + I
Sbjct: 781  ELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEI 839

Query: 896  YEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
            +EEA+A+Y V Y +A   G V  CSFAWRVAG ALC L   +  G  E+P+   PS L+
Sbjct: 840  FEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSPSALK 896


>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
          Length = 521

 Score =  355 bits (910), Expect = 3e-95
 Identities = 189/376 (50%), Positives = 243/376 (64%), Gaps = 21/376 (5%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G +SGKVLVYRNPG+HFGD+H++KA Y++E+E  VGNAKY IFFS KG RS A EMA GD
Sbjct: 148  GQVSGKVLVYRNPGLHFGDIHVLKATYIEEMESFVGNAKYAIFFSKKGPRSIADEMAGGD 207

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXX 364
            FDGDM+W+SRN ELLKYFK ++PW +  S    K + P + SD                 
Sbjct: 208  FDGDMFWVSRNPELLKYFKPSDPWIKKSSTGKVKSKQPIDLSDRELEDELIKLFLTVRFK 267

Query: 365  PSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKK---- 532
            PSF  + A+E WL  MDR LTLGDD   EKN +K  + +L+DIYYDALDAPK G K    
Sbjct: 268  PSFAKSEASEGWLALMDRFLTLGDDCVAEKNAVKDNLFELVDIYYDALDAPKQGGKQQDL 327

Query: 533  ---------------VKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 667
                           V+VP+ELK   +PHYME+    S+HS SILG IYD V AY+ E  
Sbjct: 328  AKFFEAYAALELSFQVEVPRELKPNRFPHYMEK--QNSFHSRSILGWIYDEVDAYQLEDH 385

Query: 668  LQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLL 847
              +E++KL  F++ +PEA +  WKA Y+ YR +M +AL + D  K +AA EV +KYK+LL
Sbjct: 386  SNKEIFKLPHFEVEVPEACLTKWKAHYKDYRDDMCDALLAKDVGKTEAAEEVKRKYKRLL 445

Query: 848  YEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIA 1024
            Y A ++EES+K  + IY EA+AIYHV Y+YA+    V  CSFAW +AGSAL  L A++  
Sbjct: 446  YGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAWNIAGSALLKLHAFKKI 505

Query: 1025 GPKEKPLTILPSVLRD 1072
            G  E+    LPSVL++
Sbjct: 506  G--ERAFFCLPSVLKE 519


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  340 bits (871), Expect = 1e-90
 Identities = 179/357 (50%), Positives = 240/357 (67%), Gaps = 2/357 (0%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G I+GKVLVYRNPG+HFGD+H++ A YV+++  VVGNAKY IFFS+KG RS A E+A GD
Sbjct: 702  GQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGD 761

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXX 364
            FDGDMYW+SRNS+LL+YF+  EPW    S      + P+EFS D                
Sbjct: 762  FDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQ 821

Query: 365  PSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKV 541
            PS+  + AA++WL  MD+ L LG++R  E+N ++ KI+QLI+IYYDALDAP K GKK++V
Sbjct: 822  PSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEV 881

Query: 542  PQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEA 721
            P+ LKA   PH+MER  + SY S+SILGQI+D    Y+ E V   EV KL CF+  +PE 
Sbjct: 882  PKHLKAGTLPHFMERGKN-SYVSTSILGQIFDTANMYQEE-VPNIEVQKLPCFEEELPEY 939

Query: 722  YVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIYE 901
                WK  YE YRK+M +A++   ++KN AA   IKKYK++LY A ++E S ++ + +Y+
Sbjct: 940  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQ 999

Query: 902  EAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1072
            EA+AIY V Y++AM   V  C FAW+VAGSAL  L A +     E+    LPSV+R+
Sbjct: 1000 EALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK---HSERSFHCLPSVMRE 1053


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  333 bits (855), Expect = 7e-89
 Identities = 174/338 (51%), Positives = 231/338 (68%), Gaps = 5/338 (1%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G +SG+VLVYR+PG+HFGD+H++KA YVKE+E VVGNAKY IFFS KG RS A EM  
Sbjct: 440  DSGQMSGQVLVYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVADEMGG 499

Query: 182  GDFDGDMYWISRNSELLKYFKANEPW-NRVYSIPDSKKRNPQE-FSDVXXXXXXXXXXXX 355
            GDFDGD+YW+SRN +LL+ FK +EPW     S P      P E   +             
Sbjct: 500  GDFDGDLYWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNHIEDALIKLFLKT 559

Query: 356  XXXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKV 535
               PSF M+ A++SWL  MDRLL LGD   +EK ++K  +++L+D+YY+ALDAPK G KV
Sbjct: 560  RFEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPKKGGKV 619

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIP 715
             VP ELK+ ++PHYMER    SY S+SILG IYD V AY+ E    +EV KL  FD+ +P
Sbjct: 620  VVPGELKSNLFPHYMERVN--SYKSTSILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVP 677

Query: 716  EAYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQLLY-EAPDMEESSKNTQ 889
            E  +  W+  Y+ YR EM  A++  D +SKN+AA++V++KYK++LY  A D+E S++   
Sbjct: 678  EECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLENSTRPLH 737

Query: 890  VIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALC 1000
             I++EA+AIY V Y++A+  G V KC FAW+VAGSALC
Sbjct: 738  EIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALC 775


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  332 bits (852), Expect = 2e-88
 Identities = 184/365 (50%), Positives = 239/365 (65%), Gaps = 10/365 (2%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G +SGKVLVYR PG+H GD+H++KA YVKEIE +VGNAKYGIFFS KG RS A EM  GD
Sbjct: 1049 GQLSGKVLVYRYPGLHIGDIHVLKATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGD 1108

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKK-------RNPQEFSDVXXXXXXXXX 346
            FDGD+YW+SRN +LL+++K +EPW    SI   K         +P++  DV         
Sbjct: 1109 FDGDLYWVSRNPQLLEWYKPSEPWIEA-SISTKKNPSRCPSDHSPEDLEDV----LFRSF 1163

Query: 347  XXXXXXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSG 526
                  PSF M+ AA++WL +MD  LTLGD    EKN +K KI+QL+D+YY ALDA K G
Sbjct: 1164 LTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDAAKKG 1223

Query: 527  KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFD- 703
             KV VP+ELK   +PHYM +  + SY S+SILG IY+RV  ++ E    +EV KL  FD 
Sbjct: 1224 VKVDVPKELKVSCFPHYMGK--NRSYPSTSILGSIYNRVDEHQTEDRSLKEVEKLPAFDE 1281

Query: 704  IPIPEAYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQLLYEAPDMEESSK 880
              +P+A ++ W   +  YRKEM  AL+  D +SKN +A+ VI+KY+++LYEA D EES +
Sbjct: 1282 NEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKILYEANDFEESRR 1341

Query: 881  NTQVIYEEAVAIYHVIYEYA-MIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILP 1057
              + IY EA AIYHV Y++A  +  V+ CSFAWRVAG ALC L A       E+  TI+ 
Sbjct: 1342 PIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHA---RNNNERFCTIVS 1398

Query: 1058 SVLRD 1072
            SVL +
Sbjct: 1399 SVLME 1403


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  332 bits (850), Expect = 3e-88
 Identities = 180/359 (50%), Positives = 233/359 (64%), Gaps = 3/359 (0%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G +SG+VLVYRNPG+HFGD+HI+KA YV+E+E+ VGNAKY IFF  KG RS A EM+ 
Sbjct: 519  DCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSG 578

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXX 358
            GDFDGDM+++SRN  LL+ FK  EPW    S P+   R P EFSD               
Sbjct: 579  GDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNR 638

Query: 359  XXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKV 535
              PSF +  AA+SWL  MDRLLTLG+D   E   +K  I  LIDIYYDALDAP K G+K+
Sbjct: 639  FQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKI 698

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIP 715
            +VP+ LKAE++PH+ME+    +Y S+SILG+IYD+V AY++  +              + 
Sbjct: 699  EVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSSN-----------VH 747

Query: 716  EAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVI 895
            E+ +  WK  Y  YR EM+ AL++G E KN+ ANEVIKKYK++LYEA +   S +  + I
Sbjct: 748  ESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSRRRDEEI 806

Query: 896  YEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
            +EEA A+Y V Y +A   G V KC FAWRVAG ALC L  + +   +E+PL   PS L+
Sbjct: 807  FEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVLKNQEERPLICSPSALK 863


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  325 bits (833), Expect = 3e-86
 Identities = 176/359 (49%), Positives = 234/359 (65%), Gaps = 2/359 (0%)
 Frame = +2

Query: 2    DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 181
            D G ISGKVLVYR+PG+HFGD+H+  A Y++++ E+VGNAK+ IFFST+G RSAA E+A 
Sbjct: 634  DHGQISGKVLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIAN 693

Query: 182  GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXX 358
            GDFDGDMYWIS N ELL YFKA  PW R  S     +R P E+S D              
Sbjct: 694  GDFDGDMYWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLESR 753

Query: 359  XXPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVK 538
              PS     AA+SWL +MDRLLTLGD+ A EK  L  K+++L D+YY+A+DAPKSGKKV+
Sbjct: 754  FHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVE 813

Query: 539  VPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPE 718
            VP++LK E YPH+MER     Y S+SILGQIYD V + + +   + ++  L CF   +  
Sbjct: 814  VPKDLKPERYPHFMER--TYQYTSTSILGQIYDLVASAQMDVPCE-DIELLPCFLEEVEP 870

Query: 719  AYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIY 898
            + +  WK  Y  YR EM +AL S D+ K++ A+EVI+ YK++LY A + EE ++  + I+
Sbjct: 871  SGMEKWKGLYAQYRDEMNKALSSTDQKKSN-ADEVIQNYKKILYGAQEYEERTRPREEIF 929

Query: 899  EEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1072
             EA  IY + Y YA     + KC FAW+VAG ALC L A +    K+  +T L SVL++
Sbjct: 930  REACEIYAISYFYAKEKSDIAKCGFAWKVAGCALCELHALK---QKKNSITCLSSVLQE 985


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  317 bits (813), Expect = 5e-84
 Identities = 171/361 (47%), Positives = 235/361 (65%), Gaps = 6/361 (1%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G ISG+VLVYRNPG+HFGD+HI+KA YVK +EE VGN+KY +FF  KG RS   E+A GD
Sbjct: 627  GQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGD 686

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXP 367
            FDGDMY+ISRN ELL++FK +EPW  V   P SK  + +  S +                
Sbjct: 687  FDGDMYFISRNPELLEHFKPSEPW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKA 744

Query: 368  SFD----MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKV 535
             F     +  AA+SWLT MDRLL LGD+RA EK  +K K+++LIDIYYDALDAPK G KV
Sbjct: 745  GFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKV 804

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAY-KNEAVLQREVWKLSCF-DIP 709
             +P EL+ +++PHYMER  +  + S+SILG IYD V +    E     E+ KL CF D P
Sbjct: 805  YLPNELRPDIFPHYMER--EKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEP 862

Query: 710  IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQ 889
            + E ++   +  Y++YR EM +A+++    K+++ANEVI++YKQ  Y A   E+S K+ +
Sbjct: 863  VSEFHMEKCRRWYDNYRSEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLE 919

Query: 890  VIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
             +Y +A+ +Y ++Y+YA+  GV KC F W+VAG  LC    + +   +EK L   PSVL+
Sbjct: 920  ELYPQALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRF--YLMKKMQEKSLVCAPSVLK 977

Query: 1070 D 1072
            +
Sbjct: 978  E 978


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  313 bits (801), Expect = 1e-82
 Identities = 171/361 (47%), Positives = 233/361 (64%), Gaps = 6/361 (1%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G ISG+VLVYRNPG+HFGD+HI+KA YVK +EE VGN+K+ +FF  KG RS   E+A GD
Sbjct: 623  GQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGD 682

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXP 367
            FDGDMY+ISRN ELL+ FK +EPW  V   P SK  + +  S +                
Sbjct: 683  FDGDMYFISRNPELLENFKPSEPW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTA 740

Query: 368  SFD----MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKV 535
             F     +  AA+SWLT MDR L LGDDRA EK  +K K+++LIDIYYDALDAPK G KV
Sbjct: 741  GFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKV 800

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVL-QREVWKLSCF-DIP 709
             +P +LK +++PHYMER  D  + S+SILG I+D V +   E      E+ KL CF D P
Sbjct: 801  YLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEP 858

Query: 710  IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQ 889
            + E ++   +  Y++YR EM +A+++    K+++ANEVI++YKQ  Y A   E+S K+ +
Sbjct: 859  VSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLE 915

Query: 890  VIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
             +Y +A+A+Y ++Y+YA+  GV KC F W+VAG  LC    +     +EK L   PSVL+
Sbjct: 916  ELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRF--YLNKKMQEKCLVCAPSVLK 973

Query: 1070 D 1072
            +
Sbjct: 974  E 974


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  311 bits (798), Expect = 3e-82
 Identities = 175/360 (48%), Positives = 235/360 (65%), Gaps = 7/360 (1%)
 Frame = +2

Query: 14   ISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFD 193
            I G VLVYRNPG+HFGD+H M A YVKE+E  VG++KYGIFF   G RS A E+A GDFD
Sbjct: 633  IVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFD 692

Query: 194  GDMYWISRNSELLKYFKANEPWNRVYSIP-DSKKRNPQEFS-DVXXXXXXXXXXXXXXXP 367
            GD YW+S + +LL+YF+  +PW    S+P DS  + P EFS +                P
Sbjct: 693  GDTYWVSNHPQLLQYFRKGDPWIE-NSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQP 751

Query: 368  SFDMATAAESWLTFMDRLLTLGD-DRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVP 544
            S+ M  +  SW+  MDRLLTL +     EK  +K  +++LIDIYY+ALDAPKSG+KV+VP
Sbjct: 752  SYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVP 811

Query: 545  QELKAEMYPHYMERWPDLSYHSSSILGQIYDRV-IAYKNEAVLQREVWKLSCFDIPIPEA 721
             +L AE++PHYME+  D S+ S+SILG IYD V I  +N+ V   E+WKL CFD+ +P +
Sbjct: 812  NDLIAELFPHYMEK--DKSFTSTSILGLIYDEVEIWLENDMV--GEIWKLPCFDVEVPPS 867

Query: 722  YVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLLY-EAPDMEESSKNTQVI 895
             +  WK +YE YRK+M +AL   D+SK ++ A EV +KYK+  Y    +ME   K+   I
Sbjct: 868  CLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDI 927

Query: 896  YEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1072
            + EA+A+Y+V YEYAM+   V++C FAW++AGSAL  L    I    EK L   PSV+R+
Sbjct: 928  FNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRL---YIIKQNEKALNCDPSVVRE 984


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  310 bits (794), Expect = 9e-82
 Identities = 170/353 (48%), Positives = 227/353 (64%), Gaps = 3/353 (0%)
 Frame = +2

Query: 23   KVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 202
            KVLVYRNPG+HFGD+H++KA YVKE+E+ VG +KY IFF   G RS A E+A GDFDGDM
Sbjct: 662  KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 721

Query: 203  YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDM 379
            Y++SRN ELLK+FK +E W        + KR P +FS +                PS   
Sbjct: 722  YFVSRNPELLKHFKESERWMSTSKNLSANKR-PIDFSLEELESELFKLFLNTRFCPSNAK 780

Query: 380  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPK-SGKKVKVPQELK 556
            + AA+ W   MDR LTLGD+ A EK  +K  +++LI+IYYDALDAPK SG KV+VP++LK
Sbjct: 781  SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 840

Query: 557  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMW 736
             E +P YM R   +S+ S+S+LG IY+ V +Y+       E+WKL CFD  +PEA +  W
Sbjct: 841  VEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW 900

Query: 737  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIYEEAVAI 916
            K  Y+ YR EMKEA++     + +AA  VI+KYKQ+LY A + E+S++  + IY EA+AI
Sbjct: 901  KGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAI 960

Query: 917  YHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1072
            Y++ Y+ A     V  CSFAWRVAGSAL    A R     ++ +    SVLR+
Sbjct: 961  YNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR---QGDRSMLCSASVLRE 1010


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  310 bits (794), Expect = 9e-82
 Identities = 170/353 (48%), Positives = 227/353 (64%), Gaps = 3/353 (0%)
 Frame = +2

Query: 23   KVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 202
            KVLVYRNPG+HFGD+H++KA YVKE+E+ VG +KY IFF   G RS A E+A GDFDGDM
Sbjct: 664  KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723

Query: 203  YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDM 379
            Y++SRN ELLK+FK +E W        + KR P +FS +                PS   
Sbjct: 724  YFVSRNPELLKHFKESERWMSTSKNLSANKR-PIDFSLEELESELFKLFLNTRFCPSNAK 782

Query: 380  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPK-SGKKVKVPQELK 556
            + AA+ W   MDR LTLGD+ A EK  +K  +++LI+IYYDALDAPK SG KV+VP++LK
Sbjct: 783  SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842

Query: 557  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMW 736
             E +P YM R   +S+ S+S+LG IY+ V +Y+       E+WKL CFD  +PEA +  W
Sbjct: 843  VEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW 902

Query: 737  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIYEEAVAI 916
            K  Y+ YR EMKEA++     + +AA  VI+KYKQ+LY A + E+S++  + IY EA+AI
Sbjct: 903  KGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAI 962

Query: 917  YHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1072
            Y++ Y+ A     V  CSFAWRVAGSAL    A R     ++ +    SVLR+
Sbjct: 963  YNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR---QGDRSMLCSASVLRE 1012


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  307 bits (786), Expect = 7e-81
 Identities = 168/360 (46%), Positives = 231/360 (64%), Gaps = 6/360 (1%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G ISG VLVYRNPG+HFGD+H++KA YVK +E+ VGNAK+ +FF  KG RS   E+A GD
Sbjct: 634  GQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGD 693

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXXXXXX 358
            FDGDMY+ISRN +LL++FK +EPW  V S   SK    R P E S+              
Sbjct: 694  FDGDMYFISRNPKLLEHFKPSEPW--VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKA 751

Query: 359  XXPSFD-MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKV 535
                 D +  AA+ WL  MD  LTLGD+ A EK   K  I++LIDIYYDALDAPK G KV
Sbjct: 752  RFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKV 811

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCF-DIPI 712
             +P +L+ + +PHYMER P   + S+SILG I+D V ++  E     E+ KL  F D P+
Sbjct: 812  DLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPV 871

Query: 713  PEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLLYEAPDMEESSKNTQ 889
            P+++++ + + YE+YR EM +A+   D+ K N   NEVI++YKQ  Y A   E+S+K+ +
Sbjct: 872  PKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLE 931

Query: 890  VIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
             +Y +A+A+Y+V+Y+YA+  GV KC+FAW VAG  LC    + +   K+K +    SVL+
Sbjct: 932  ELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKTKDKSVVASTSVLK 988


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  307 bits (786), Expect = 7e-81
 Identities = 168/360 (46%), Positives = 231/360 (64%), Gaps = 6/360 (1%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G ISG VLVYRNPG+HFGD+H++KA YVK +E+ VGNAK+ +FF  KG RS   E+A GD
Sbjct: 608  GQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGD 667

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXXXXXX 358
            FDGDMY+ISRN +LL++FK +EPW  V S   SK    R P E S+              
Sbjct: 668  FDGDMYFISRNPKLLEHFKPSEPW--VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKA 725

Query: 359  XXPSFD-MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKV 535
                 D +  AA+ WL  MD  LTLGD+ A EK   K  I++LIDIYYDALDAPK G KV
Sbjct: 726  RFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKV 785

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCF-DIPI 712
             +P +L+ + +PHYMER P   + S+SILG I+D V ++  E     E+ KL  F D P+
Sbjct: 786  DLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPV 845

Query: 713  PEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLLYEAPDMEESSKNTQ 889
            P+++++ + + YE+YR EM +A+   D+ K N   NEVI++YKQ  Y A   E+S+K+ +
Sbjct: 846  PKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLE 905

Query: 890  VIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1069
             +Y +A+A+Y+V+Y+YA+  GV KC+FAW VAG  LC    + +   K+K +    SVL+
Sbjct: 906  ELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKTKDKSVVASTSVLK 962


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  304 bits (778), Expect = 6e-80
 Identities = 170/347 (48%), Positives = 222/347 (63%), Gaps = 7/347 (2%)
 Frame = +2

Query: 8    GPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGD 187
            G ISG VLVYRNPG+HFGD+H++KA YVK +EE VGN+KY +FF  KG RS   E+A GD
Sbjct: 635  GQISGDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGD 694

Query: 188  FDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKK---RNPQEFSDVXXXXXXXXXXXXX 358
            FDGDMY+ISRN ELL+ FK +EPW  V   P SK    R P +FS               
Sbjct: 695  FDGDMYFISRNPELLEQFKPSEPW--VSLSPPSKSNSTRKPIDFSPEELEEELFDMFLKA 752

Query: 359  XXPSFD-MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKV 535
               S + +  AA+SWLT MDR LTLGD+RA EK  +K K++ LIDIYYDALDA K G KV
Sbjct: 753  RFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKV 812

Query: 536  KVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAY-KNEAVLQREVWKLSCF-DIP 709
             +P  LK +++PHYMER  D  + S+SILG IYD V +    E     E+ KL CF D P
Sbjct: 813  SLPDALKPDIFPHYMER--DKKFKSTSILGIIYDFVQSQTAEEHTPSSEISKLQCFEDEP 870

Query: 710  IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNTQ 889
            + E +    +  Y++YR EM +AL     +K+D A+EVI+KYKQ  Y A   E+S K+ +
Sbjct: 871  VSEFHKEKCRPWYDNYRAEMIQAL----SNKDDTASEVIEKYKQEFYGAAGFEDSKKSLE 926

Query: 890  VIYEEAVAIYHVIYEYAM-IHGVEKCSFAWRVAGSALCNLCAWRIAG 1027
             +Y +A+A+Y+++Y+YA+ +  V KC FAW+VAG  LC     +  G
Sbjct: 927  ELYPQALALYNIVYDYAIEMKSVRKCGFAWKVAGPVLCRFYLKKTGG 973