BLASTX nr result
ID: Rehmannia22_contig00021855
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Rehmannia22_contig00021855 (1287 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s... 409 e-162 gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ... 405 e-162 gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ... 405 e-162 gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ... 405 e-162 gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ... 405 e-162 ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s... 416 e-162 ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s... 408 e-161 gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ... 390 e-158 gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ... 390 e-158 ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par... 408 e-157 ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par... 406 e-157 ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr... 387 e-155 ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s... 385 e-154 ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put... 382 e-152 dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis... 397 e-152 ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t... 397 e-152 gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor... 390 e-152 ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab... 395 e-152 ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr... 392 e-150 ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III s... 399 e-150 >ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X2 [Solanum tuberosum] Length = 1153 Score = 409 bits (1052), Expect(2) = e-162 Identities = 212/260 (81%), Positives = 232/260 (89%), Gaps = 3/260 (1%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 ++ VIIGRMPIMLRS CC+LYGKDE+EL+R GECPLDPGGYFVIKGTEKVILIQEQLSKN Sbjct: 138 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 197 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413 RIIID DKKG VQASV SSTE TKSKT+I+MEKEK+YL LN F TKVPIM+V+KAMGMES Sbjct: 198 RIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMES 257 Query: 412 DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QKVKKLP-YST-TYEKEG 242 DQEVVQMIGRDPR+S LLLPSIE+C ++TQ+QALEFLE K+ K+P YST EK Sbjct: 258 DQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKMLKMPSYSTGPVEKGA 317 Query: 241 RVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 62 R LSILRD FLANVPV Q+NFR KCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG Sbjct: 318 RALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 377 Query: 61 QMLSLLFEDLFKTMNDEARK 2 Q+LSLLFEDLFKTMNDEAR+ Sbjct: 378 QLLSLLFEDLFKTMNDEARR 397 Score = 192 bits (487), Expect(2) = e-162 Identities = 92/136 (67%), Positives = 110/136 (80%) Frame = -2 Query: 1172 DSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIK 993 DS + N +++ IDKQ LA+P+KN V+K+QL+PEFLKVRGLVKQHLDSFNYFVRT+IK Sbjct: 4 DSTMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIK 63 Query: 992 KIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNI 813 KIV+AN I S +DP+IYLRY+DV IG PS+V D VTEKL P KCR+SD TYAAPIYV I Sbjct: 64 KIVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTI 123 Query: 812 EYITGSHGSKTTQTKR 765 EY TGSHG + TK+ Sbjct: 124 EYTTGSHGQTSVSTKK 139 >gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao] Length = 1158 Score = 405 bits (1040), Expect(2) = e-162 Identities = 201/261 (77%), Positives = 230/261 (88%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +++IGRMPIMLRSCCC+LYGKDE EL+R GECPLDPGGYFVIKG EKVILIQEQL Sbjct: 141 RLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQL 200 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIYL LNQF K+PIM+V+KAMG Sbjct: 201 SKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMG 260 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYS-TTYEKE 245 MESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QALE+LE KVK++ Y+ EKE Sbjct: 261 MESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKE 320 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAILNKDAMDDKDYVGNKRLELS Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKT E +K Sbjct: 381 GQLISLLFEDLFKTTISEVQK 401 Score = 195 bits (495), Expect(2) = e-162 Identities = 96/144 (66%), Positives = 117/144 (81%), Gaps = 3/144 (2%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 1020 M +K++D L N+ + + +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60 Query: 1019 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLT 840 NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V+EK++PH CR+SD+T Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120 Query: 839 YAAPIYVNIEYITGSHGSKTTQTK 768 YAAPI+VNIEYI GSHG KT K Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEK 144 >gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao] Length = 1034 Score = 405 bits (1040), Expect(2) = e-162 Identities = 201/261 (77%), Positives = 230/261 (88%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +++IGRMPIMLRSCCC+LYGKDE EL+R GECPLDPGGYFVIKG EKVILIQEQL Sbjct: 141 RLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQL 200 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIYL LNQF K+PIM+V+KAMG Sbjct: 201 SKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMG 260 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYS-TTYEKE 245 MESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QALE+LE KVK++ Y+ EKE Sbjct: 261 MESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKE 320 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAILNKDAMDDKDYVGNKRLELS Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKT E +K Sbjct: 381 GQLISLLFEDLFKTTISEVQK 401 Score = 195 bits (495), Expect(2) = e-162 Identities = 96/144 (66%), Positives = 117/144 (81%), Gaps = 3/144 (2%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 1020 M +K++D L N+ + + +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60 Query: 1019 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLT 840 NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V+EK++PH CR+SD+T Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120 Query: 839 YAAPIYVNIEYITGSHGSKTTQTK 768 YAAPI+VNIEYI GSHG KT K Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEK 144 >gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao] Length = 1034 Score = 405 bits (1040), Expect(2) = e-162 Identities = 201/261 (77%), Positives = 230/261 (88%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +++IGRMPIMLRSCCC+LYGKDE EL+R GECPLDPGGYFVIKG EKVILIQEQL Sbjct: 141 RLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQL 200 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIYL LNQF K+PIM+V+KAMG Sbjct: 201 SKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMG 260 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYS-TTYEKE 245 MESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QALE+LE KVK++ Y+ EKE Sbjct: 261 MESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKE 320 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAILNKDAMDDKDYVGNKRLELS Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKT E +K Sbjct: 381 GQLISLLFEDLFKTTISEVQK 401 Score = 195 bits (495), Expect(2) = e-162 Identities = 96/144 (66%), Positives = 117/144 (81%), Gaps = 3/144 (2%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 1020 M +K++D L N+ + + +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60 Query: 1019 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLT 840 NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V+EK++PH CR+SD+T Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120 Query: 839 YAAPIYVNIEYITGSHGSKTTQTK 768 YAAPI+VNIEYI GSHG KT K Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEK 144 >gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao] Length = 1011 Score = 405 bits (1040), Expect(2) = e-162 Identities = 201/261 (77%), Positives = 230/261 (88%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +++IGRMPIMLRSCCC+LYGKDE EL+R GECPLDPGGYFVIKG EKVILIQEQL Sbjct: 141 RLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQL 200 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIYL LNQF K+PIM+V+KAMG Sbjct: 201 SKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMG 260 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYS-TTYEKE 245 MESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QALE+LE KVK++ Y+ EKE Sbjct: 261 MESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKE 320 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAILNKDAMDDKDYVGNKRLELS Sbjct: 321 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 380 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKT E +K Sbjct: 381 GQLISLLFEDLFKTTISEVQK 401 Score = 195 bits (495), Expect(2) = e-162 Identities = 96/144 (66%), Positives = 117/144 (81%), Gaps = 3/144 (2%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 1020 M +K++D L N+ + + +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60 Query: 1019 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLT 840 NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V+EK++PH CR+SD+T Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120 Query: 839 YAAPIYVNIEYITGSHGSKTTQTK 768 YAAPI+VNIEYI GSHG KT K Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEK 144 >ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis vinifera] Length = 1142 Score = 416 bits (1069), Expect(2) = e-162 Identities = 205/261 (78%), Positives = 236/261 (90%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +V+IGRMPIMLRSCCC+LY KDE EL+R GECPLDPGGYFV+KGTEKVILIQEQL Sbjct: 123 RVEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQL 182 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIID DKKG + ASV SSTE+TKSKTVI MEKEKI+L LNQF +K+PIMIV+KAMG Sbjct: 183 SKNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMG 242 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLP-YSTTYEKE 245 MESDQEVVQM+GR+PRYS LLLPS+E+C ++TQ QALEFLE+KVKKLP Y+ + EKE Sbjct: 243 MESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKE 302 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR ++ILRDTF+ANVPVRQNNFRPKC+YVAVM+RRMM+AILNKDAMDDKDYVGNKRLELS Sbjct: 303 GRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELS 362 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKTM E +K Sbjct: 363 GQLISLLFEDLFKTMISEVKK 383 Score = 183 bits (465), Expect(2) = e-162 Identities = 89/123 (72%), Positives = 102/123 (82%) Frame = -2 Query: 1136 LDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSR 957 + I K A PVK AV+KF LLPEFLKVRGLVKQHLDSFNYFV+T IKKIV+AND I S Sbjct: 4 MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 63 Query: 956 IDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGSHGSKTT 777 +DPSIYLR+KDVRIG PS+ +DG++EKL+PH CR+SD+TYAAPI VNIEYITGSH KT Sbjct: 64 VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 123 Query: 776 QTK 768 K Sbjct: 124 VEK 126 >ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum lycopersicum] Length = 1183 Score = 408 bits (1049), Expect(2) = e-161 Identities = 212/260 (81%), Positives = 231/260 (88%), Gaps = 3/260 (1%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 ++ VIIGRMPIMLRS CC+LYGKDE+EL+R GECPLDPGGYFVIKGTEKVILIQEQLSKN Sbjct: 168 KKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKN 227 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413 RIIID DKKG VQASV SSTE TKSKT+I+MEKEK+YL LN F TKVPIM+V+KAMGMES Sbjct: 228 RIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMES 287 Query: 412 DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QKVKKLP-YST-TYEKEG 242 DQEVVQMIGRDPR+S LLLPSIE+C ++TQ QALEFLE K+ K+P YST EK Sbjct: 288 DQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESDKMLKMPSYSTGPIEKGA 347 Query: 241 RVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 62 R LSILRD FLANVPV Q+NFR KCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG Sbjct: 348 RALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 407 Query: 61 QMLSLLFEDLFKTMNDEARK 2 Q+LSLLFEDLFKTMNDEAR+ Sbjct: 408 QLLSLLFEDLFKTMNDEARR 427 Score = 188 bits (477), Expect(2) = e-161 Identities = 90/136 (66%), Positives = 109/136 (80%) Frame = -2 Query: 1172 DSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIK 993 DS + N +++ IDKQ LA+ +KN V+K+QL+PEFLKVRGLVKQHLDSFNYFVRT+IK Sbjct: 34 DSTMSNTTEDSNQGIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIK 93 Query: 992 KIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNI 813 KIV+AN I S +DP+IYLRY+DV IG PS+V D VTEKL P KCR+SD TYAAPIYV I Sbjct: 94 KIVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTI 153 Query: 812 EYITGSHGSKTTQTKR 765 +Y TGSHG + TK+ Sbjct: 154 DYTTGSHGQTSVSTKK 169 >gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao] Length = 1153 Score = 390 bits (1003), Expect(2) = e-158 Identities = 196/261 (75%), Positives = 225/261 (86%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +++IGRMPIMLRSCCC+LYGKDE EL+R GECPLDPGGYFVIKG EK EQL Sbjct: 141 RLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQL 195 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIYL LNQF K+PIM+V+KAMG Sbjct: 196 SKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMG 255 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYS-TTYEKE 245 MESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QALE+LE KVK++ Y+ EKE Sbjct: 256 MESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKE 315 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAILNKDAMDDKDYVGNKRLELS Sbjct: 316 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 375 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKT E +K Sbjct: 376 GQLISLLFEDLFKTTISEVQK 396 Score = 195 bits (495), Expect(2) = e-158 Identities = 96/144 (66%), Positives = 117/144 (81%), Gaps = 3/144 (2%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 1020 M +K++D L N+ + + +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60 Query: 1019 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLT 840 NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V+EK++PH CR+SD+T Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120 Query: 839 YAAPIYVNIEYITGSHGSKTTQTK 768 YAAPI+VNIEYI GSHG KT K Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEK 144 >gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao] Length = 1006 Score = 390 bits (1003), Expect(2) = e-158 Identities = 196/261 (75%), Positives = 225/261 (86%), Gaps = 1/261 (0%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +++IGRMPIMLRSCCC+LYGKDE EL+R GECPLDPGGYFVIKG EK EQL Sbjct: 141 RLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQL 195 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIYL LNQF K+PIM+V+KAMG Sbjct: 196 SKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMG 255 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYS-TTYEKE 245 MESDQEVVQM+GRDP Y+ +LLPSIE+C ++TQ QALE+LE KVK++ Y+ EKE Sbjct: 256 MESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKE 315 Query: 244 GRVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 65 GR LSILRD FLANVPVR NNFRPKC+YVAVM+RRM+EAILNKDAMDDKDYVGNKRLELS Sbjct: 316 GRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELS 375 Query: 64 GQMLSLLFEDLFKTMNDEARK 2 GQ++SLLFEDLFKT E +K Sbjct: 376 GQLISLLFEDLFKTTISEVQK 396 Score = 195 bits (495), Expect(2) = e-158 Identities = 96/144 (66%), Positives = 117/144 (81%), Gaps = 3/144 (2%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSF 1020 M +K++D L N+ + + +DKQ LAAP+K+AV+KFQLLPEFLKVRGLVKQHLDSF Sbjct: 1 MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60 Query: 1019 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLT 840 NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V+EK++PH CR+SD+T Sbjct: 61 NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120 Query: 839 YAAPIYVNIEYITGSHGSKTTQTK 768 YAAPI+VNIEYI GSHG KT K Sbjct: 121 YAAPIFVNIEYIQGSHGQKTRLEK 144 >ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] Length = 1034 Score = 408 bits (1048), Expect(2) = e-157 Identities = 203/258 (78%), Positives = 230/258 (89%), Gaps = 1/258 (0%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 + +V+IGRMPIMLRSCCC+LYGK+E EL+R GECPLDPGGYFV+KGTEKVILIQEQLSKN Sbjct: 140 KNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKN 199 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413 RIIID DKKG + ASV SSTEATKSKTVI MEKEK+YL LNQFA K+PIM+V+KAMGMES Sbjct: 200 RIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGMES 259 Query: 412 DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGRV 236 DQEVVQM+GRDPRYS LLLPSIE+C V+TQ QALE+LE VK+ Y S++ EKE R Sbjct: 260 DQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKENRA 319 Query: 235 LSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQM 56 L+ILRD F+ANVPVR+NNFRPKCIYVAVM+RRMMEA+LNKDAMDDKDYVGNKRLELSGQ+ Sbjct: 320 LAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQL 379 Query: 55 LSLLFEDLFKTMNDEARK 2 +SLLFEDLFKTM E +K Sbjct: 380 ISLLFEDLFKTMITEVQK 397 Score = 177 bits (449), Expect(2) = e-157 Identities = 88/141 (62%), Positives = 111/141 (78%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYF 1011 MVV + DS ++ ++ +D K A AAPVK+AV+KFQLLPEFLK RGLVKQHLDSFNYF Sbjct: 1 MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59 Query: 1010 VRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAA 831 + IKKIV+AND I S +DPS+YLR+ DV+IG PS+V+D ++E+++PH CR+SD TYAA Sbjct: 60 INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119 Query: 830 PIYVNIEYITGSHGSKTTQTK 768 PI VNIEYI+GSHG K K Sbjct: 120 PILVNIEYISGSHGRKEKMIK 140 >ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical protein POPTR_0015s005302g, partial [Populus trichocarpa] Length = 1035 Score = 406 bits (1043), Expect(2) = e-157 Identities = 202/259 (77%), Positives = 230/259 (88%), Gaps = 2/259 (0%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 + +V+IGRMPIMLRSCCC+LYGK+E EL+R GECPLDPGGYFV+KGTEKVILIQEQLSKN Sbjct: 140 KNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKN 199 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413 RIIID DKKG + ASV SSTEATKSKTVI MEKEK+YL LNQFA K+PIM+V+KAMGMES Sbjct: 200 RIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGMES 259 Query: 412 DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY--STTYEKEGR 239 DQEVVQM+GRDPRYS LLLPSIE+C V+TQ QALE+LE VK+ Y S+T ++E R Sbjct: 260 DQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKQENR 319 Query: 238 VLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQ 59 L+ILRD F+ANVPVR+NNFRPKCIYVAVM+RRMMEA+LNKDAMDDKDYVGNKRLELSGQ Sbjct: 320 ALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQ 379 Query: 58 MLSLLFEDLFKTMNDEARK 2 ++SLLFEDLFKTM E +K Sbjct: 380 LISLLFEDLFKTMITEVQK 398 Score = 177 bits (449), Expect(2) = e-157 Identities = 88/141 (62%), Positives = 111/141 (78%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYF 1011 MVV + DS ++ ++ +D K A AAPVK+AV+KFQLLPEFLK RGLVKQHLDSFNYF Sbjct: 1 MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59 Query: 1010 VRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAA 831 + IKKIV+AND I S +DPS+YLR+ DV+IG PS+V+D ++E+++PH CR+SD TYAA Sbjct: 60 INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119 Query: 830 PIYVNIEYITGSHGSKTTQTK 768 PI VNIEYI+GSHG K K Sbjct: 120 PILVNIEYISGSHGRKEKMIK 140 >ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina] gi|557534507|gb|ESR45625.1| hypothetical protein CICLE_v10000078mg [Citrus clementina] Length = 1149 Score = 387 bits (993), Expect(2) = e-155 Identities = 191/259 (73%), Positives = 223/259 (86%), Gaps = 1/259 (0%) Frame = -3 Query: 775 KRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSK 596 ++ +V+IGR+PIMLRSC C+LYGKDE EL+R GECPLDPGGYF+IKGTEKV+LIQEQLSK Sbjct: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194 Query: 595 NRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGME 416 NR+IID DKKG + ASV SSTE KSKTVI+MEK K+YL LNQF K+PIM+V+KAMGME Sbjct: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254 Query: 415 SDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGR 239 SDQEVVQM+GRDPRYS LLLPSIE+C ++TQ +ALE+LE KVK+ + S ++EGR Sbjct: 255 SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314 Query: 238 VLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQ 59 SILRD FLANVPV NNFRPKC YVAVM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ Sbjct: 315 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374 Query: 58 MLSLLFEDLFKTMNDEARK 2 ++SLLFEDLFKTM E +K Sbjct: 375 LVSLLFEDLFKTMISEVQK 393 Score = 189 bits (480), Expect(2) = e-155 Identities = 91/120 (75%), Positives = 104/120 (86%) Frame = -2 Query: 1127 DKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 948 DKQ LAAPVK+ V+KFQLLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP Sbjct: 17 DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76 Query: 947 SIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGSHGSKTTQTK 768 SI+LR+KDVRIG PS+ +DGV+EKL+PH CR+SD+TYAAPI VNIEY+ GSH KTT K Sbjct: 77 SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136 >ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform X2 [Citrus sinensis] Length = 1149 Score = 385 bits (989), Expect(2) = e-154 Identities = 190/259 (73%), Positives = 223/259 (86%), Gaps = 1/259 (0%) Frame = -3 Query: 775 KRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSK 596 ++ +V+IGR+PIMLRSC C+LYGKDE EL+R GECPLDPGGYF+IKGTEKV+LIQEQLSK Sbjct: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194 Query: 595 NRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGME 416 NR+IID DKKG + ASV SSTE KSKTVI+MEK K+YL LNQF K+PIM+V+KAMG+E Sbjct: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIE 254 Query: 415 SDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGR 239 SDQEVVQM+GRDPRYS LLLPSIE+C ++TQ +ALE+LE KVK+ + S ++EGR Sbjct: 255 SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314 Query: 238 VLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQ 59 SILRD FLANVPV NNFRPKC YVAVM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ Sbjct: 315 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374 Query: 58 MLSLLFEDLFKTMNDEARK 2 ++SLLFEDLFKTM E +K Sbjct: 375 LVSLLFEDLFKTMISEVQK 393 Score = 189 bits (480), Expect(2) = e-154 Identities = 91/120 (75%), Positives = 104/120 (86%) Frame = -2 Query: 1127 DKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 948 DKQ LAAPVK+ V+KFQLLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP Sbjct: 17 DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76 Query: 947 SIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGSHGSKTTQTK 768 SI+LR+KDVRIG PS+ +DGV+EKL+PH CR+SD+TYAAPI VNIEY+ GSH KTT K Sbjct: 77 SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136 >ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis] Length = 1139 Score = 382 bits (980), Expect(2) = e-152 Identities = 192/260 (73%), Positives = 222/260 (85%) Frame = -3 Query: 781 RPKRREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQL 602 R ++ +V+IGRMPIMLRS C+LYGKDE EL+R GECPLDPGGYFVIKGTEKVILIQEQL Sbjct: 139 RVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQL 198 Query: 601 SKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMG 422 SKNRIIID DKKG + ASV SSTEATKSKT+I+MEKEK+YL LNQF K+PIM+V+KAMG Sbjct: 199 SKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMG 258 Query: 421 MESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTTYEKEG 242 MESDQEVVQM+GRDPRYS LLLPSIE+C +++TQ +ALE+L+ KE Sbjct: 259 MESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLD------------GKEN 306 Query: 241 RVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 62 R L+ILRD FLANVPV +NNFRPKC+YVAVM+RRMMEA+LNKDAMDDKDYVGNKRLELSG Sbjct: 307 RALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSG 366 Query: 61 QMLSLLFEDLFKTMNDEARK 2 Q++SLLFEDLFKTM E ++ Sbjct: 367 QLISLLFEDLFKTMITEVQR 386 Score = 186 bits (472), Expect(2) = e-152 Identities = 95/143 (66%), Positives = 116/143 (81%), Gaps = 2/143 (1%) Frame = -2 Query: 1190 MVVKEDDSALFNDLQENGLD--IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFN 1017 M + + DS++ N+ ++N ++ IDKQ L AP+K+AV+KFQLLPEFLKVRGLVKQHLDSFN Sbjct: 1 MGLMQTDSSIGNN-EQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFN 59 Query: 1016 YFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTY 837 YFV IKKIV+AND I S +DP IYLR+KDVRIGTPS ++DGV+E+LSPH CR+SD TY Sbjct: 60 YFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTY 119 Query: 836 AAPIYVNIEYITGSHGSKTTQTK 768 AAPI VN+EYI GSH KT K Sbjct: 120 AAPILVNVEYIYGSHDQKTRVEK 142 >dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana] Length = 1194 Score = 397 bits (1021), Expect(2) = e-152 Identities = 198/254 (77%), Positives = 226/254 (88%) Frame = -3 Query: 763 VIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNRII 584 VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYF+IKGTEKV+LIQEQLSKNRII Sbjct: 161 VIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 220 Query: 583 IDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESDQE 404 ID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L++F K+PI+IVLKAMGMESDQE Sbjct: 221 IDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQE 280 Query: 403 VVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTTYEKEGRVLSIL 224 +VQM+GRDPR+S LLPSIE+CV E V+TQ QAL++LE KVKK+ Y T EK+GR LSIL Sbjct: 281 IVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDGRALSIL 340 Query: 223 RDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLL 44 RD FLA+VPV NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++SLL Sbjct: 341 RDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLL 400 Query: 43 FEDLFKTMNDEARK 2 FEDLFKTM EA K Sbjct: 401 FEDLFKTMLSEAIK 414 Score = 169 bits (428), Expect(2) = e-152 Identities = 78/129 (60%), Positives = 100/129 (77%) Frame = -2 Query: 1154 DLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 975 DL + IDK+ L+AP+K+ +KFQL+PEFLKVRGLVKQHLDSFNYF+ I KIV+AN Sbjct: 30 DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 89 Query: 974 DLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGS 795 ITS +DPSIYLR+K VR+G PS++ E ++PH CR++D+TYAAPI+VNIEY+ GS Sbjct: 90 SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 149 Query: 794 HGSKTTQTK 768 HG+K K Sbjct: 150 HGNKAKSAK 158 >ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana] gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana] Length = 1161 Score = 397 bits (1021), Expect(2) = e-152 Identities = 198/254 (77%), Positives = 226/254 (88%) Frame = -3 Query: 763 VIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNRII 584 VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYF+IKGTEKV+LIQEQLSKNRII Sbjct: 140 VIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 199 Query: 583 IDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESDQE 404 ID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L++F K+PI+IVLKAMGMESDQE Sbjct: 200 IDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQE 259 Query: 403 VVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTTYEKEGRVLSIL 224 +VQM+GRDPR+S LLPSIE+CV E V+TQ QAL++LE KVKK+ Y T EK+GR LSIL Sbjct: 260 IVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDGRALSIL 319 Query: 223 RDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLL 44 RD FLA+VPV NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++SLL Sbjct: 320 RDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLL 379 Query: 43 FEDLFKTMNDEARK 2 FEDLFKTM EA K Sbjct: 380 FEDLFKTMLSEAIK 393 Score = 169 bits (428), Expect(2) = e-152 Identities = 78/129 (60%), Positives = 100/129 (77%) Frame = -2 Query: 1154 DLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 975 DL + IDK+ L+AP+K+ +KFQL+PEFLKVRGLVKQHLDSFNYF+ I KIV+AN Sbjct: 9 DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 68 Query: 974 DLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGS 795 ITS +DPSIYLR+K VR+G PS++ E ++PH CR++D+TYAAPI+VNIEY+ GS Sbjct: 69 SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 128 Query: 794 HGSKTTQTK 768 HG+K K Sbjct: 129 HGNKAKSAK 137 >gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis] Length = 786 Score = 390 bits (1001), Expect(2) = e-152 Identities = 193/259 (74%), Positives = 230/259 (88%), Gaps = 2/259 (0%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 + +V+IGRMPIMLRSCCC+LYGKDE EL++ GECPLDPGGYF++KGTEKV+LIQEQLSKN Sbjct: 187 KTDVVIGRMPIMLRSCCCVLYGKDEAELAKLGECPLDPGGYFIVKGTEKVLLIQEQLSKN 246 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFAT-KVPIMIVLKAMGME 416 RIIID DKKG + ASV SS+EA KSKTVI+MEKEK+YL LNQF+T K+PIM+V+KAMGME Sbjct: 247 RIIIDTDKKGNINASVTSSSEAIKSKTVIQMEKEKLYLMLNQFSTKKIPIMVVIKAMGME 306 Query: 415 SDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGR 239 SDQEVVQM+GRDPRYS LL+PS+E+C KE ++TQ QAL +LE KVKK + S + EK+ R Sbjct: 307 SDQEVVQMLGRDPRYSALLMPSLEECGKEGIYTQEQALGYLESKVKKPMFPSASSEKDDR 366 Query: 238 VLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQ 59 V++IL+D FLANV V NNFRPKCIYVAVM+RR+M+AILNKDAMDDKDYVGNKRLELSGQ Sbjct: 367 VMAILKDVFLANVRVHGNNFRPKCIYVAVMIRRIMDAILNKDAMDDKDYVGNKRLELSGQ 426 Query: 58 MLSLLFEDLFKTMNDEARK 2 ++SLLFEDLFK+M E R+ Sbjct: 427 LISLLFEDLFKSMITEVRR 445 Score = 176 bits (447), Expect(2) = e-152 Identities = 91/141 (64%), Positives = 106/141 (75%), Gaps = 7/141 (4%) Frame = -2 Query: 1169 SALFNDLQENGLD-------IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYF 1011 +A ND E G D IDKQ LAAP+K AV+K+QLLPEFLKVRGLVKQHLDSFNYF Sbjct: 49 TAFLND--ERGRDGTILSPAIDKQFLAAPIKRAVDKYQLLPEFLKVRGLVKQHLDSFNYF 106 Query: 1010 VRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAA 831 V T+IKKIV++N I S +DPSIYLR+ DVRIG PS+ +DGV+EKL P CR+SDLTYAA Sbjct: 107 VNTEIKKIVRSNSRIVSSVDPSIYLRFTDVRIGEPSVTMDGVSEKLDPQTCRLSDLTYAA 166 Query: 830 PIYVNIEYITGSHGSKTTQTK 768 PI ++EYI GSH K K Sbjct: 167 PIKADVEYIHGSHNQKIQSGK 187 >ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata] Length = 1165 Score = 395 bits (1014), Expect(2) = e-152 Identities = 197/257 (76%), Positives = 225/257 (87%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 + + IIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYFVIKGTEKV+LIQEQLSKN Sbjct: 137 KNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKN 196 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413 RIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L+QF K+PI+IVLKAMGMES Sbjct: 197 RIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIVLKAMGMES 256 Query: 412 DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTTYEKEGRVL 233 DQE+VQM+GRDPR+S LLPSIE+CV E V+TQ QAL++LE KVKK Y EK+GR L Sbjct: 257 DQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYGPPPEKDGRAL 316 Query: 232 SILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQML 53 ILRD FLA+VPVR NNFR KC YV VM+RRM+EA+LNKD+MDDKDYVGNKRLELSGQ++ Sbjct: 317 YILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKRLELSGQLM 376 Query: 52 SLLFEDLFKTMNDEARK 2 SLLFEDLFKTM EA K Sbjct: 377 SLLFEDLFKTMLSEAIK 393 Score = 171 bits (433), Expect(2) = e-152 Identities = 80/129 (62%), Positives = 102/129 (79%) Frame = -2 Query: 1154 DLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 975 DL + IDK+ L+AP+K+ +KFQL+PEFLKVRGLVKQHLDSFNYF+ IKKIV AN Sbjct: 9 DLTNDDNFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHAN 68 Query: 974 DLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGS 795 I S DPSIYLR+K+VR+G PS++ ++E+++PH CR++D+TYAAPIYVNIEY+ GS Sbjct: 69 CRIASVTDPSIYLRFKNVRVGEPSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGS 128 Query: 794 HGSKTTQTK 768 HG K T K Sbjct: 129 HGKKATSVK 137 >ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum] gi|557099252|gb|ESQ39616.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum] Length = 1164 Score = 392 bits (1007), Expect(2) = e-150 Identities = 197/254 (77%), Positives = 223/254 (87%) Frame = -3 Query: 763 VIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNRII 584 VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYFVIKGTEKV+LIQEQLSKNRII Sbjct: 140 VIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRII 199 Query: 583 IDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESDQE 404 ID+DKKG + ASV SSTE TKSKTVI+MEK KIYL+L+QF K+PI+IVLKAMGMESDQE Sbjct: 200 IDSDKKGNINASVTSSTEMTKSKTVIQMEKGKIYLFLHQFVKKIPIIIVLKAMGMESDQE 259 Query: 403 VVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTTYEKEGRVLSIL 224 +VQM+GRDPR+S LLPSIE+CV E V+T+ QAL++LE KVKK Y EK+GR L IL Sbjct: 260 IVQMVGRDPRFSASLLPSIEECVSEGVNTRKQALDYLEAKVKKTSYGPPPEKDGRALYIL 319 Query: 223 RDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLL 44 RD FLA+VPVR NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++SLL Sbjct: 320 RDVFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLL 379 Query: 43 FEDLFKTMNDEARK 2 FEDLFKTM EA K Sbjct: 380 FEDLFKTMITEAVK 393 Score = 169 bits (427), Expect(2) = e-150 Identities = 79/129 (61%), Positives = 101/129 (78%) Frame = -2 Query: 1154 DLQENGLDIDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 975 DL + +D+Q L+AP+K+ +KFQL+PEFLKVRGLVKQHLDSFNYFV IKKIV+AN Sbjct: 9 DLINDDHFVDRQKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRAN 68 Query: 974 DLITSRIDPSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGS 795 LITS +DP IYLR+K+VR+G PS++ + E+++PH CR++D+TYAAPIYVNIEY GS Sbjct: 69 SLITSSLDPEIYLRFKEVRVGEPSILNVNMAEEINPHMCRLADMTYAAPIYVNIEYAHGS 128 Query: 794 HGSKTTQTK 768 HG K Sbjct: 129 HGKTQHSAK 137 >ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum lycopersicum] Length = 1149 Score = 399 bits (1024), Expect(2) = e-150 Identities = 203/260 (78%), Positives = 231/260 (88%), Gaps = 3/260 (1%) Frame = -3 Query: 772 RREVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593 +++V+IGRMPIMLRSC C+LY KDEE+L++ GECPLDPGGYFV+ G EKVILIQEQLSKN Sbjct: 140 QKDVVIGRMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFVVNGREKVILIQEQLSKN 199 Query: 592 RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413 RIIID D+KGCVQASV+ STE TKSKT+I+MEKEK+YL LN F TKVPIM+V+KAMGMES Sbjct: 200 RIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMES 259 Query: 412 DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QKVKKLP-YST-TYEKEG 242 DQEVVQMIGRDPRYS LLLPSIE+C ++TQ+QALEFLE K+ ++P YST EK Sbjct: 260 DQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLENDKMFRMPSYSTGPVEKGA 319 Query: 241 RVLSILRDTFLANVPVRQNNFRPKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 62 R LSILRD FLA+VPV Q+NFR KCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG Sbjct: 320 RALSILRDMFLAHVPVNQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 379 Query: 61 QMLSLLFEDLFKTMNDEARK 2 Q+LSLLFEDLFK+MNDEAR+ Sbjct: 380 QLLSLLFEDLFKSMNDEARR 399 Score = 161 bits (408), Expect(2) = e-150 Identities = 77/122 (63%), Positives = 99/122 (81%) Frame = -2 Query: 1130 IDKQALAAPVKNAVEKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRID 951 IDKQ LA+P+KN+V+K+QL+PEFLKVRGLVKQHL SFNY V+T I+KIV+AN I S D Sbjct: 20 IDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKTDIRKIVRANHEIRSTRD 79 Query: 950 PSIYLRYKDVRIGTPSLVIDGVTEKLSPHKCRISDLTYAAPIYVNIEYITGSHGSKTTQT 771 P+I+LRY+DVRIG PS+ DGV EKLSP KCR++DLTYAAPI+V ++Y +G + T Sbjct: 80 PNIFLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIFVTVDYTMIRNGQISMAT 139 Query: 770 KR 765 ++ Sbjct: 140 QK 141