BLASTX nr result

ID: Rehmannia22_contig00021769 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00021769
         (1351 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF64710.1| putative transposase [Ipomoea tricolor]                47   6e-10
gb|ESW21756.1| hypothetical protein PHAVU_005G096800g [Phaseolus...    42   2e-07
ref|NP_850486.2| Nucleic acid-binding, OB-fold-like protein [Ara...    43   4e-06

>dbj|BAF64710.1| putative transposase [Ipomoea tricolor]
          Length = 517

 Score = 47.0 bits (110), Expect(2) = 6e-10
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -2

Query: 1254 GNFWISAKIIANESGMDWWYIACTK--CSKKTTKIAGEFYCEKC 1129
            G+FW++AKI+  ES  DW+Y++C    C+KK T     + C+KC
Sbjct: 291  GDFWVAAKIVGIESSWDWFYVSCKSHGCNKKLTLRNTLYDCDKC 334



 Score = 45.1 bits (105), Expect(2) = 6e-10
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = -1

Query: 1111 RYKLQVRVADYTRNAAFLIWDRECIELIGKTAYELKE 1001
            RY+++VR  D   NA F++WD+EC EL+G +A +L++
Sbjct: 344  RYRVKVRAVDLDGNAPFILWDKECTELLGISATDLRQ 380


>gb|ESW21756.1| hypothetical protein PHAVU_005G096800g [Phaseolus vulgaris]
          Length = 457

 Score = 42.0 bits (97), Expect(3) = 2e-07
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = -1

Query: 1111 RYKLQVRVADYTRNAAFLIWDRECIELIGKTAYELKESSNEEVLS*YLDK 962
            RYKL++RV D T +  F+++DR+   LI K+  EL ES ++ V S  L K
Sbjct: 287  RYKLKLRVIDETNSTTFVLFDRDATTLINKSCAELFESHDKNVDSGVLPK 336



 Score = 32.3 bits (72), Expect(3) = 2e-07
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 1206 DWWYIACTKCSKKTTKIAGEFYCEKCD 1126
            DWWY  C  C K     +  F+CEKC+
Sbjct: 253  DWWYTTCL-CGKAVYPDSKMFFCEKCN 278



 Score = 28.1 bits (61), Expect(3) = 2e-07
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = -3

Query: 857 IPKEIQDLVDKKLLFMVKIKTGQHKFFSGVLPVTKLTTDNTIIEKYHGLWNGSQQSDMFS 678
           +PK+   L+DK +LF V     Q+  F     V K+  D++ I+++       +  D+F+
Sbjct: 334 LPKDFDLLIDKVVLFKVGCVKYQYLRFDQSFRVKKVCIDDSTIQRF--CEGRVENVDLFN 391

Query: 677 KMKSADFD 654
           K  +   D
Sbjct: 392 KFSTEAAD 399


>ref|NP_850486.2| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
            gi|330250868|gb|AEC05962.1| Nucleic acid-binding,
            OB-fold-like protein [Arabidopsis thaliana]
          Length = 532

 Score = 42.7 bits (99), Expect(2) = 4e-06
 Identities = 19/37 (51%), Positives = 30/37 (81%)
 Frame = -1

Query: 1111 RYKLQVRVADYTRNAAFLIWDRECIELIGKTAYELKE 1001
            R+++QV V D+T  A+FL++D++ I+LI K+AYEL E
Sbjct: 327  RFRVQVTVLDHTGEASFLLFDQDVIKLIHKSAYELLE 363



 Score = 36.2 bits (82), Expect(2) = 4e-06
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -2

Query: 1242 ISAKIIANESGMDWWYIACTKCSKKTTKI---------AGEFYCEKCD-FKDPIGTNFK 1096
            I A I + ++ + W+YI C  C KK +           AG++ CEKCD F     T F+
Sbjct: 271  IIASIFSIDTKVPWFYIGCNICFKKVSPYFNPETEEIEAGKYECEKCDTFVTTTSTRFR 329


Top