BLASTX nr result
ID: Rehmannia22_contig00021441
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00021441
(495 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEA39176.1| polyprotein [Dahlia mosaic virus] 165 9e-54
gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus] 165 3e-53
gb|ABW80581.1| polyprotein [Dahlia mosaic virus] 163 7e-53
gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus] 164 2e-52
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10] 160 1e-51
gb|ADZ44590.1| polyprotein [Dahlia mosaic virus] 157 4e-51
emb|CAH68829.1| polyprotein [Carnation etched ring virus] 161 1e-48
ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]... 172 5e-41
ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic prote... 168 8e-40
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote... 168 8e-40
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] g... 164 1e-38
gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus] 161 7e-38
gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland] 161 7e-38
ref|YP_001931961.1| replicase [Lamium leaf distortion virus] gi|... 159 3e-37
gb|AGR88238.1| reverse transcriptase [Dahlia mosaic virus] 112 2e-36
ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia fl... 151 8e-35
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus] 150 2e-34
gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus] 150 2e-34
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 149 3e-34
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu... 149 3e-34
>gb|AEA39176.1| polyprotein [Dahlia mosaic virus]
Length = 808
Score = 165 bits (418), Expect(2) = 9e-54
Identities = 81/121 (66%), Positives = 96/121 (79%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLGVLTYAESYIP+LAE+RKPLQ KL D++W W D++YI KIKK LI FPKL
Sbjct: 614 KHLQRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQSDTNYIKKIKKNLISFPKL 673
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ++ LII+TDAS FWGGVLKAK + +E+ C+YTSGSFK AE NYHSNEKE L+
Sbjct: 674 YLPKEKEFLIIETDASNDFWGGVLKAKTAD--KEEVCRYTSGSFKTAEKNYHSNEKELLA 731
Query: 132 V 130
V
Sbjct: 732 V 732
Score = 70.9 bits (172), Expect(2) = 9e-54
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KFS YLTPVKF+VRTDNKNFTYFLK KI GD KQGRLV
Sbjct: 727 KELLAVKNTISKFSIYLTPVKFLVRTDNKNFTYFLKTKISGDNKQGRLV 775
>gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]
Length = 814
Score = 165 bits (417), Expect(2) = 3e-53
Identities = 81/121 (66%), Positives = 95/121 (78%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLGVLTYAESYIP+LAE+RKPLQ KL D++W W D++YI KIKK L FPKL
Sbjct: 620 KHLQRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQSDTNYIKKIKKNLTSFPKL 679
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P E+ LII+TDAS FWGGVLKAK + +E+ C+YTSGSFK AE NYHSNEKE L+
Sbjct: 680 YLPKEEEFLIIETDASNDFWGGVLKAKTAD--KEEVCRYTSGSFKTAEKNYHSNEKELLA 737
Query: 132 V 130
V
Sbjct: 738 V 738
Score = 69.7 bits (169), Expect(2) = 3e-53
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KFS YLTPVKF+VRTDN+NFTYFLK KI GD KQGRLV
Sbjct: 733 KELLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRLV 781
>gb|ABW80581.1| polyprotein [Dahlia mosaic virus]
Length = 812
Score = 163 bits (413), Expect(2) = 7e-53
Identities = 80/121 (66%), Positives = 95/121 (78%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLGVLTYAESYIP+LAE+RKPLQ KL D++W W D++YI KIKK L FPKL
Sbjct: 618 KHLQRFLGVLTYAESYIPKLAELRKPLQVKLKKDYVWEWKQSDTNYIKKIKKNLTSFPKL 677
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ++ LII+TDAS FWGGVLKAK + +E+ C+YTSGSFK AE NYHSNEKE L+
Sbjct: 678 YLPKEKEFLIIETDASNDFWGGVLKAKTAD--KEEVCRYTSGSFKTAERNYHSNEKELLA 735
Query: 132 V 130
V
Sbjct: 736 V 736
Score = 69.7 bits (169), Expect(2) = 7e-53
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KFS YLTPVKF+VRTDN+NFTYFLK KI GD KQGRLV
Sbjct: 731 KELLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRLV 779
>gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]
Length = 825
Score = 164 bits (415), Expect(2) = 2e-52
Identities = 81/121 (66%), Positives = 92/121 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLGVLTYAESYIP+LAE+R+PLQ KL D +W W D++Y+ KIKK L FPKL
Sbjct: 627 KHLQRFLGVLTYAESYIPKLAELRRPLQVKLKKDFVWEWKQSDTNYVKKIKKNLTSFPKL 686
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y PN ED LII+T AS FWGGVLK K T E+ CKYTSGSFK AE NYHSNEKE L+
Sbjct: 687 YLPNKEDFLIIETGASNEFWGGVLKVKTAET--EEICKYTSGSFKTAEKNYHSNEKELLA 744
Query: 132 V 130
V
Sbjct: 745 V 745
Score = 67.4 bits (163), Expect(2) = 2e-52
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KFS YL PVKF+VRTDN+NFTYFLK KI GD KQGRLV
Sbjct: 740 KELLAVKNTISKFSIYLIPVKFLVRTDNRNFTYFLKTKISGDNKQGRLV 788
>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
Length = 810
Score = 160 bits (404), Expect(2) = 1e-51
Identities = 77/121 (63%), Positives = 93/121 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLG+LTYAESYIP+LAE+R+PLQ KL D++W W D+ YI KIKK L FPKL
Sbjct: 616 KHLQRFLGILTYAESYIPKLAELRRPLQVKLKKDYVWEWKQSDTSYIKKIKKNLTSFPKL 675
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ++ LII+TDAS +WGGVLKAK +E+ C+YTSGSFK AE NYHSNEKE L+
Sbjct: 676 YLPKEKEFLIIETDASNDYWGGVLKAKTAE--KEEVCRYTSGSFKTAEKNYHSNEKELLA 733
Query: 132 V 130
V
Sbjct: 734 V 734
Score = 68.9 bits (167), Expect(2) = 1e-51
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KFS YLTPVKF+VRTD+KNFTYFLK KI GD KQGRLV
Sbjct: 729 KELLAVKNAISKFSIYLTPVKFLVRTDSKNFTYFLKTKISGDNKQGRLV 777
>gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]
Length = 806
Score = 157 bits (397), Expect(2) = 4e-51
Identities = 77/121 (63%), Positives = 93/121 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLGVLTYAESYIP+LAE+R+PLQ KL D++W W D++YI KIKK L FPKL
Sbjct: 612 KHLQRFLGVLTYAESYIPKLAELRRPLQVKLKKDYVWEWKQSDTNYIKKIKKNLTSFPKL 671
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ++ II+TDAS FWGGVLKAK + +E C+YTSGSFK AE NYHSNEK+ L+
Sbjct: 672 YLPKEKEFPIIETDASNDFWGGVLKAKTAD--KEAVCRYTSGSFKTAEKNYHSNEKKLLA 729
Query: 132 V 130
V
Sbjct: 730 V 730
Score = 70.1 bits (170), Expect(2) = 4e-51
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K++L + KFS YLTPVKF+VRTDN+NFTYFLK KI GD KQGRL+
Sbjct: 725 KKLLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQGRLI 773
>emb|CAH68829.1| polyprotein [Carnation etched ring virus]
Length = 656
Score = 161 bits (408), Expect(2) = 1e-48
Identities = 79/125 (63%), Positives = 94/125 (75%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QR LG+LTYA YIP+LA IRKPLQ+KL D W W++ DS Y+ KIKK L FPKL
Sbjct: 459 KQLQRSLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKL 518
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
YHP P D+L+I+TDAS FWGG+LKA + N+ E C+Y SGSFKAAE NYHSNEKE L+
Sbjct: 519 YHPEPNDKLVIETDASEEFWGGILKA-IHNS-HEYICRYASGSFKAAERNYHSNEKELLA 576
Query: 132 VLRVL 118
V RV+
Sbjct: 577 VFRVI 581
Score = 57.8 bits (138), Expect(2) = 1e-48
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = -3
Query: 115 KFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
KFS YLTP +F++R+DNKNFT+F+ + + GD KQGRLV
Sbjct: 583 KFSIYLTPCRFLIRSDNKNFTHFVNINLKGDRKQGRLV 620
>ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]
gi|401620160|gb|AFP95350.1| reverse transcriptase
[Soybean Putnam virus]
Length = 699
Score = 172 bits (435), Expect = 5e-41
Identities = 82/126 (65%), Positives = 98/126 (77%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LAEIRKPLQ+KL D W W++ D +Y+ KIKK L FP L
Sbjct: 503 KQLQRFLGILTYASDYIPKLAEIRKPLQSKLKKDVPWTWTHDDINYMSKIKKNLKSFPTL 562
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
YHP D LII+TDASGSFWGG+LKA+ +N+ E C+YTSGSFKAAELNYHSNEKE L+
Sbjct: 563 YHPKLTDTLIIETDASGSFWGGILKARTENSDSELICRYTSGSFKAAELNYHSNEKEILA 622
Query: 132 VLRVLK 115
V+ +K
Sbjct: 623 VMNTIK 628
Score = 73.6 bits (179), Expect = 3e-11
Identities = 32/49 (65%), Positives = 41/49 (83%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + + KKF+ YLTPVKF++RTDNKNFT+FLK+ + GDYKQGRLV
Sbjct: 618 KEILAVMNTIKKFTGYLTPVKFLIRTDNKNFTHFLKINLKGDYKQGRLV 666
>ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
Reverse transcriptase] [Carnation etched ring virus]
gi|130593|sp|P05400.1|POL_CERV RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58863|emb|CAA28360.1|
unnamed protein product [Carnation etched ring virus]
gi|225356|prf||1301227E ORF 5
Length = 659
Score = 168 bits (425), Expect = 8e-40
Identities = 84/144 (58%), Positives = 101/144 (70%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LA IRKPLQ+KL D W W++ DS Y+ KIKK L FPKL
Sbjct: 462 KQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKL 521
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
YHP P D+L+I+TDAS FWGG+LKA + N+ E C+Y SGSFKAAE NYHSNEKE L+
Sbjct: 522 YHPEPNDKLVIETDASEEFWGGILKA-IHNS-HEYICRYASGSFKAAERNYHSNEKELLA 579
Query: 132 VLRVLKNSRLI*LQSNLLFALTTK 61
V+RV+K + S L K
Sbjct: 580 VIRVIKKFSIYLTPSRFLIRTDNK 603
Score = 62.4 bits (150), Expect = 6e-08
Identities = 28/49 (57%), Positives = 37/49 (75%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KKFS YLTP +F++RTDNKNFT+F+ + + GD KQGRLV
Sbjct: 575 KELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLV 623
>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
Reverse transcriptase] [Figwort mosaic virus]
gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
unnamed protein product [Figwort mosaic virus]
Length = 666
Score = 168 bits (425), Expect = 8e-40
Identities = 84/125 (67%), Positives = 99/125 (79%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLGVLTYAE+YIP+LAEIRKPLQ KL D WNW+ DSDY+ KIKK L FPKL
Sbjct: 471 KHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKL 530
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P PED LII+TDAS SFWGGVLKA+ + + E C+Y+SGSFK AE NYHSN+KE L+
Sbjct: 531 YLPKPEDHLIIETDASDSFWGGVLKARALDGV-ELICRYSSGSFKQAEKNYHSNDKELLA 589
Query: 132 VLRVL 118
V +V+
Sbjct: 590 VKQVI 594
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KFSAYLTPV+F VRTDNKNFTYFL++ + GD KQGRLV
Sbjct: 585 KELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLV 633
>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
gi|21427196|gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
Length = 674
Score = 164 bits (414), Expect = 1e-38
Identities = 82/125 (65%), Positives = 96/125 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLGVLTYA+SYIP+LAE RKPLQ KL D +W W+ D+DY+ KIKK LI FPKL
Sbjct: 471 KQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWTQSDTDYVKKIKKGLINFPKL 530
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ED LII+TDAS FWGGVLKA+ EE C+Y+SG+FK AELNYHSNEKE L+
Sbjct: 531 YLPKKEDSLIIETDASDHFWGGVLKAQTTEG-EELICRYSSGTFKPAELNYHSNEKELLA 589
Query: 132 VLRVL 118
V +V+
Sbjct: 590 VKQVI 594
>gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]
Length = 673
Score = 161 bits (408), Expect = 7e-38
Identities = 80/125 (64%), Positives = 95/125 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLGVLTYA+SYIP+LAE RKPLQ KL D +W W+ D+DY+ KIKK L+ FPKL
Sbjct: 473 KQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWNQSDTDYVKKIKKGLVNFPKL 532
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ED LII+TDAS FWGGVLKA+ E C+Y+SG+FK AELNYHSNEKE L+
Sbjct: 533 YLPKKEDSLIIETDASDHFWGGVLKAQTTEG-NELICRYSSGTFKPAELNYHSNEKELLA 591
Query: 132 VLRVL 118
V +V+
Sbjct: 592 VKQVI 596
>gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]
Length = 673
Score = 161 bits (408), Expect = 7e-38
Identities = 80/125 (64%), Positives = 95/125 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLGVLTYA+SYIP+LAE RKPLQ KL D +W W+ D+DY+ KIKK L+ FPKL
Sbjct: 473 KQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWNQSDTDYVKKIKKGLVNFPKL 532
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ED LII+TDAS FWGGVLKA+ E C+Y+SG+FK AELNYHSNEKE L+
Sbjct: 533 YLPKKEDSLIIETDASDHFWGGVLKAQTTEG-NELICRYSSGTFKPAELNYHSNEKELLA 591
Query: 132 VLRVL 118
V +V+
Sbjct: 592 VKQVI 596
>ref|YP_001931961.1| replicase [Lamium leaf distortion virus]
gi|172041757|gb|ACB69767.1| replicase [Lamium leaf
distortion virus]
Length = 696
Score = 159 bits (403), Expect = 3e-37
Identities = 76/125 (60%), Positives = 97/125 (77%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LA +R PLQ KL D WNW + D++Y+ +IKK L FPKL
Sbjct: 496 KQLQRFLGILTYASDYIPQLASMRAPLQEKLKEDVPWNWKHSDTEYVEEIKKSLTDFPKL 555
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
+HP +++LII+ DASG +WGG+LKA Q+ EE+ C+YTSGSFK AELNYHSNEKE L+
Sbjct: 556 HHPATDEKLIIECDASGKYWGGILKAIHQS--EERICRYTSGSFKKAELNYHSNEKEILA 613
Query: 132 VLRVL 118
V+RV+
Sbjct: 614 VIRVI 618
Score = 63.9 bits (154), Expect = 2e-08
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K +L + KF+ YLTP++F++RTDNKNFT+F+ + GDYKQGRLV
Sbjct: 609 KEILAVIRVIAKFTIYLTPLEFLIRTDNKNFTFFMNTNVKGDYKQGRLV 657
>gb|AGR88238.1| reverse transcriptase [Dahlia mosaic virus]
Length = 810
Score = 112 bits (281), Expect(2) = 2e-36
Identities = 59/125 (47%), Positives = 80/125 (64%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ R+LGVLTYAESYI +LA++ K LQ KL D++W W D+ +IKK L +FPKL
Sbjct: 616 KHFPRYLGVLTYAESYIQKLADLWKLLQVKLKTDYVWKWKQSDTRNNIQIKKILTRFPKL 675
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
Y P ++ LII+TD+S +W GVLKA +E+ C Y +GSFK E Y SN E L
Sbjct: 676 YLPKEKEFLIIETDSSNDYWRGVLKANTD--AKEEVCTYPTGSFKTGERIYDSNYNELLI 733
Query: 132 VLRVL 118
+ ++
Sbjct: 734 IKNII 738
Score = 65.9 bits (159), Expect(2) = 2e-36
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -3
Query: 115 KFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
KFS YLTPVKF+V TD++NFTYFLK KI+GD KQGRLV
Sbjct: 740 KFSIYLTPVKFLVSTDSRNFTYFLKTKILGDNKQGRLV 777
>ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia flower distortion virus]
gi|219815610|gb|ACL36982.1| putative enzymatic
polyprotein [Rudbeckia flower distortion virus]
Length = 701
Score = 151 bits (382), Expect = 8e-35
Identities = 72/125 (57%), Positives = 95/125 (76%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K+ QRFLG+LTYA+ YI +LAE RKPLQ KL D +W W++ D+ Y+ K K+ L +FPKL
Sbjct: 503 KSLQRFLGILTYADQYIRKLAEWRKPLQRKLKKDTVWEWNDSDTQYVEKFKRNLKEFPKL 562
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKAKVQNTLEEKNCKYTSGSFKAAELNYHSNEKEYLS 133
+HP P++ LII+TDAS W GVLK++ + L E+ C+YTSGSFK AE+NYHSNEKE L+
Sbjct: 563 HHPLPDEYLIIETDASHEHWAGVLKSRGTDNL-ERLCRYTSGSFKPAEINYHSNEKEVLA 621
Query: 132 VLRVL 118
V R +
Sbjct: 622 VKRTI 626
Score = 55.5 bits (132), Expect = 7e-06
Identities = 27/49 (55%), Positives = 32/49 (65%)
Frame = -3
Query: 148 KRVLISLESPKKFSAYLTPVKFIVRTDNKNFTYFLKLKIIGDYKQGRLV 2
K VL + KF YL +F+VRTDNK FTYFL+ I DYKQGRL+
Sbjct: 617 KEVLAVKRTITKFKGYLASSEFLVRTDNKYFTYFLRTSIKDDYKQGRLI 665
>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 150 bits (378), Expect = 2e-34
Identities = 75/128 (58%), Positives = 97/128 (75%), Gaps = 2/128 (1%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LA+IRKPLQAKL + W W+ D+ Y+ K+KK L FP L
Sbjct: 474 KQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPL 533
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKA-KV-QNTLEEKNCKYTSGSFKAAELNYHSNEKEY 139
+HP PE++LII+TDAS +WGG+LKA K+ ++T E C+Y SGSFKAAE NYHSN+KE
Sbjct: 534 HHPLPEEKLIIETDASDDYWGGMLKAIKINEDTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 138 LSVLRVLK 115
L+V+ +K
Sbjct: 594 LAVINTIK 601
>gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]
Length = 675
Score = 150 bits (378), Expect = 2e-34
Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LA+IRKPLQAKL + W W+ D+ Y+ K+KK L FP L
Sbjct: 474 KQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQAFPPL 533
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKA-KV-QNTLEEKNCKYTSGSFKAAELNYHSNEKEY 139
+HP PE++LII+TDAS +WGG+LKA K+ + T E C+Y SGSFKAAE NYHSN+KE
Sbjct: 534 HHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 138 LSVLRVLK 115
L+V+ +K
Sbjct: 594 LAVINTIK 601
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase gi|293185|gb|AAA62375.1| reverse
transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 149 bits (377), Expect = 3e-34
Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LA+IRKPLQAKL + W W+ D+ Y+ K+KK L FP L
Sbjct: 478 KQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPL 537
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKA-KV-QNTLEEKNCKYTSGSFKAAELNYHSNEKEY 139
+HP PE++LII+TDAS +WGG+LKA K+ + T E C+Y SGSFKAAE NYHSN+KE
Sbjct: 538 HHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKET 597
Query: 138 LSVLRVLK 115
L+V+ +K
Sbjct: 598 LAVINTIK 605
>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase
Length = 674
Score = 149 bits (377), Expect = 3e-34
Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Frame = -1
Query: 492 KNNQRFLGVLTYAESYIPRLAEIRKPLQAKL*NDHIWNWSNFDSDYIGKIKKKLIQFPKL 313
K QRFLG+LTYA YIP+LA+IRKPLQAKL + W W+ D+ Y+ K+KK L FP L
Sbjct: 473 KQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPL 532
Query: 312 YHPNPEDQLIIKTDASGSFWGGVLKA-KV-QNTLEEKNCKYTSGSFKAAELNYHSNEKEY 139
+HP PE++LII+TDAS +WGG+LKA K+ + T E C+Y SGSFKAAE NYHSN+KE
Sbjct: 533 HHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 592
Query: 138 LSVLRVLK 115
L+V+ +K
Sbjct: 593 LAVINTIK 600